LOC122323670


Basic Information

Item Value
gene id LOC122323670
gene name NA
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 23935921 ~ 23939016 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU22230
CTGACTTTCTTGTGCACTTTTGTTTGCAGTGAAACAGCTCATGATATTTAAGCATGAGCAAATAAAGGTGAAGTGCCATGTCTCTCTCTCATAGCCATGAgaaaccttttttattaaaattatgtcCCTGTTTAAATACAAGCCTTGTTTTTATCTGCATTTAAGATAAGCTTTTTGGGATCccattagttaaaataaaaaaattatttaacatgaactaatattTTC
>XM_043217689.1
GAACGATATAActtttacaaaacataaaataaaataactccAAAGTGAGCATGGTACACAGTCAAAACCACTAAATGACGACATTTCGTATCGTTTCTGATCGTATGTTTCTCGCCCAGCCAAacgttcatttatttaaatgatctcGGGCTTAGTCTCAGAGGTATCTTCACCCGAGAGAACACCACTGAAGCTGGAGAGCCGCAcatcatgcacataaatatacattatccGCAAATCAAGAATGACTTACTACAAAGTAAGAATTTGTTCCCttgtttttccttcattttatataataatggcCACAAATCTATACAGGCGAATTATTTTTGCAACCCAGGCTCATTTGAAATACTTGCATCGCATCTGCAGTACTGTTATCATGCACCCTGCACGTTTGCGGCAGTCTCAAAGTGACACGTCCAGTAAGTggcactgtttttattgttttcattgcaTCGATGTGCATGCATTGCCGTGTTTGCATTACTGTCATTACTTCAGATACGTATTTCAGGGCTTCATAATCCGAAGTGtgtcactaaaagttaatgctctacaTCAAACCTAACTCTAAACCTTCCCGATAGTGTTACCAGATGCAAAAGTGATATAGAAATGGTTTTGTCGGTGCAGCTATTTTAACTTCCTTATGCGGATTTGAGTTGTTTGATGAACCCTAGTCGTACAGGGTTCGTCCGAAGCTCTTCGACAGATTTCCTGTCAAGACATGGTATTTAATGCGAATGACCAACTTCCTCTTCCTGGCAGTACAAGTAATACGAGACCACAGCAGATCAGACTCCATCCATCTGCAATGAAATTTGGTCCCATTCTCATGTTCTTCGTGACAGATCTAATCTCCAGCACAGtATCCAGATCTGAAGACCATGTGTTCGTACAGACGGGGACTCTGTTACACTggacataaaaaataaaccactGCTAAAGTTTACAAGATTACTTTGGATGAATGATGAATCAGAAAATATAGTCAGATTTGTAAATGAATCTGGAGATATAACATGTTTTGTATACAAGGACAGAGTggatttcaataataaaacactctCTGTGACTCTGAAGAACATGCAGAAGACAGACAGTGGACTCTACACAGCAAAAACAAtaggaaaaacaacaacatttgttGCAGAACACAATGTATTAGTTATAGatcCAGTGGATTCTCCTGTTCTGAAAACAAAATTCCCCATGATAAGTGTTAACGTCTGTGTCGTGAACGTCTCATGCAGTGGACCTGATCAAACAATCAGACACAGTTACCACAGCAACGACTGCACTCaagaggaagtgacatcatctGGAGTCCAGACTCTAGCCCTGTATTGTAGAAAGAACAGAGTTGTCTGTAACTACAGCAATCCAGTCAGCTGGAAGAATCAAACTATAGAGATTAACCAACTTTGTACACCTTATGAAAAAGAACATCCAGAAGAAAACAACAGTCCTCTCTTCCTTTGGCTCTCGGTCATCGCTGGTGTATTTGTGCTGGTTTTCACAGCAGTTTCTTACAAGAAGCGTAAAAGGGTGCTGAACAGAAGGGTCATAAAGGCTGTGGAGAAGTTGGTCTAATAGATAGATCTTCTTCCTCTGGAACAGATCATACAATTTATTCAATAGTGTATTATTCAACAGTGATGGAAGACAACCTGtgcataaacagcaaattatgaaaaatggTGCGTTTGTcaatatatatcttaaaattattttaacttatttgtAGCATCCTATGCTAGTATGTAAGTTTAAGTCATTCATTAGTGATAATATGACTGATCATTGTTTTGTTGAACTTTCCTTAATATCCTtacactgtttttttgttttgtttaattaactgTATTCTGACTTTCTTGTGCACTTTTGTTTGCAGTGAAACAGCTCATGATATTTAAGCATGAGCAAATAAAGGTGAAGTGCCATGTCTCTCTCTCATAGCCATGAgaaaccttttttattaaaattatgtcCCTGTTTAAATACAAGCCTTGTTTTTATCTGCATTTAAG
>XR_006247041.1
GAACGATATAActtttacaaaacataaaataaaataactccAAAGTGAGCATGGTACACAGTCAAAACCACTAAATGACGACATTTCGTATCGTTTCTGATCGTATGTTTCTCGCCCAGCCAAacgttcatttatttaaatgatctcGGGCTTAGTCTCAGAGGTATCTTCACCCGAGAGAACACCACTGAAGCTGGAGAGCCGCAcatcatgcacataaatatacattatccGCAAATCAAGAATGACTTACTACAAAGTAAGAATTTGTTCCCttgtttttccttcattttatataataatggcCACAAATCTATACAGGCGAATTATTTTTGCAACCCAGGCTCATTTGAAATACTTGCATCGCATCTGCAGTACTGTTATCATGCACCCTGCACGTTTGCGGCAGTCTCAAAGTGACACGTCCAGTAAGTggcactgtttttattgttttcattgcaTCGATGTGCATGCATTGCCGTGTTTGCATTACTGTCATTACTTCAGATACGTATTTCAGGGCTTCATAATCCGAAGTGtgtcactaaaagttaatgctctacaTCAAACCTAACTCTAAACCTTCCCGATAGTGTTACCAGATGCAAAAGTGATATAGAAATGGTTTTGTCGGTGCAGCTATTTTAACTTCCTTATGCGGATTTGAGTTGTTTGATGAACCCTAGTCGTACAGGGTTCGTCCGAAGCTCTTCGACAGATTTCCTGTCAAGACATGGTATTTAATGCGAATGACCAACTTCCTCTTCCTGGCAGTACAAGTAATACGAGACCACAGCAGATCAGACTCCATCCATCTGCAATGAAATTTGGTCCCATTCTCATGTTCTTCGTGACAGATCTAATCTCCAGCACAGGTATTAAAGCTCTTcatttgatttctgttttaatatacagATTAGCCTACATGACGTCCATTGCAAAAGTAGCAGACtattcatatttgcatatttagagaatactgtaaatactgcgtgttagaaatattgtaaaattatcaCTACATCATGAAAGCTTAATAACAAacgtcaggaaaaaaaaatgcattttgccaGACtcactggttaaaaaaaaacaaaaaaaaaactgtaaaatatttgttaaaatggcacaattttttttttttcatttatttttttatcgtTATTCTTTTCAAGCAAGAATTGCCTTTCCAGATGGatagataaacaaataaacaaacaaacaaacagggaaaaggaaaatgaaaagatataatgaaatatgccatttgtttgaataatttaGTGAAAGTATCACGCAGAATAAATAtgtgctataaataaataaataggcctACATGTAAATGTCAAACATGGTTGCAGGGTTAAAAGGTTgttctcgtttttttttctcctcagtATCCAGATCTGAAGACCATGTGTTCGTACAGACGGGGACTCTGTTACACTggacataaaaaataaaccactGCTAAAGTTTACAAGATTACTTTGGATGAATGATGAATCAGAAAATATAGTCAGATTTGTAAATGAATCTGGAGATATAACATGTTTTGTATACAAGGACAGAGTggatttcaataataaaacactctCTGTGACTCTGAAGAACATGCAGAAGACAGACAGTGGACTCTACACAGCAAAAACAAtaggaaaaacaacaacatttgttGCAGAACACAATGTATTAGTTATAGatcCAGTGGATTCTCCTGTTCTGAAAACAAAATTCCCCATGATAAGTGTTAACGTCTGTGTCGTGAACGTCTCATGCAGTGGACCTGATCAAACAATCAGACACAGTTACCACAGCAACGACTGCACTCaagaggaagtgacatcatctGGAGTCCAGACTCTAGCCCTGTATTGTAGAAAGAACAGAGTTGTCTGTAACTACAGCAATCCAGTCAGCTGGAAGAATCAAACTATAGAGATTAACCAACTTTGTACACCTTATGAAAAAGAACATCCAGAAGAAAACAACAGTCCTCTCTTCCTTTGGCTCTCGGTCATCGCTGGTGTATTTGTGCTGGTTTTCACAGCAGTTTCTTACAAGAAGCGTAAAAGGGTGCTGAACAGAAGGGTCATAAAGGCTGTGGAGAAGTTGGTCTAATAGATAGATCTTCTTCCTCTGGAACAGATCATACAATTTATTCAATAGTGTATTATTCAACAGTGATGGAAGACAACCTGtgcataaacagcaaattatgaaaaatgTGAAACAGCTCATGATATTTAAGCATGAGCAAATAAAGGTGAAGTGCCATGTCTCTCTCTCATAGCCATGAgaaaccttttttattaaaattatgtcCCTGTTTAAATACAAGCCTTGTTTTTATC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU22230 False 228 lncRNA 0.31 1 23938789 23939016
XM_043217689.1 False 2039 mRNA 0.38 5 23935921 23938953
XR_006247041.1 True 2354 transcript 0.37 5 23935921 23938943

Neighbor

gene id symbol gene type direction distance location
LOC122323657 NA coding upstream 4032 23929631 ~ 23931889 (+)
LOC122323665 NA coding upstream 10290 23920231 ~ 23925631 (+)
hes6 hes6,LOC107737402,LOC107572989,LOC107728379,LOC107569265,LOC107679391 coding upstream 149666 23783724 ~ 23786255 (+)
lpar5a LOC107737401,LOC107698486,LOC107572991,LOC107679392,LOC107728381,LOC107569267 coding upstream 160738 23772880 ~ 23775183 (+)
LOC122356725 LOC107698487,LOC107737400,LOC107679394,LOC107572992,LOC107728385,LOC107569271,LOC793909 coding upstream 165429 23765958 ~ 23770492 (+)
LOC122328481 LOC107599284 coding downstream 56167 23995183 ~ 23997150 (+)
LOC122324443 NA coding downstream 89988 24029004 ~ 24032203 (+)
LOC122327432 LOC107549368 coding downstream 132193 24071209 ~ 24073204 (+)
LOC122324938 NA coding downstream 140140 24079156 ~ 24081504 (+)
LOC122326195 NA coding downstream 170647 24109663 ~ 24111683 (+)
G14989 NA non-coding upstream 8308 23927294 ~ 23927613 (+)
G14988 NA non-coding upstream 8671 23927040 ~ 23927250 (+)
G14979 NA non-coding upstream 51505 23883762 ~ 23884416 (+)
G14978 NA non-coding upstream 56317 23879178 ~ 23879604 (+)
G14896 per2,LOC107572994,LOC107698490 non-coding upstream 131292 23803784 ~ 23804629 (+)
LOC122328475 NA non-coding downstream 46742 23985758 ~ 23986203 (+)
LOC122328496 NA non-coding downstream 54459 23993475 ~ 23994511 (+)
LOC122328489 LOC107750089,LOC107757802 non-coding downstream 55494 23994510 ~ 23995121 (+)
G14996 NA non-coding downstream 70509 24009525 ~ 24023608 (+)
G15026 LOC107600260,LOC107713623,LOC107757800,LOC107676328 non-coding downstream 202224 24141240 ~ 24141921 (+)
G14831 LOC107679389,LOC107745621,LOC107567694,LOC108428304 other upstream 387947 23545106 ~ 23547974 (+)
LOC122324535 NA other upstream 930667 23003165 ~ 23005254 (+)
fcer1gl LOC107671799 other upstream 1240591 22691199 ~ 22695330 (+)
LOC122327931 NA other upstream 1261646 22633529 ~ 22674275 (+)
LOC122327302 LOC107705949,LOC107599389,LOC107675701,LOC107737183,LOC107661566,LOC107586444,LOC107679834,LOC107719545,LOC107717972 other upstream 1450266 22461916 ~ 22485655 (+)
LOC122327416 LOC107728372,LOC107569261,LOC107681443 other downstream 106669 24045685 ~ 24048465 (+)
LOC122327425 LOC107728372,LOC107569261,LOC107681443 other downstream 120396 24059412 ~ 24062202 (+)
LOC122327442 LOC107549368,LOC107569260,LOC107737397,LOC107681447,LOC107681444 other downstream 144822 24083838 ~ 24096897 (+)
abhd17aa abhd17aa,LOC107599293,LOC107757810,LOC107698472,LOC107600230,LOC108433103,LOC105904035,LOC108280794 other downstream 302856 24241872 ~ 24249991 (+)
G15065 rorcb,LOC107600225,LOC107757806,LOC107698501,LOC107713654,LOC107662989 other downstream 554422 24493438 ~ 24499685 (+)

Expression


Co-expression Network