LOC122327416 (LOC107728372,LOC107569261,LOC107681443)


Basic Information

Item Value
gene id LOC122327416
gene name LOC107728372,LOC107569261,LOC107681443
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 24045685 ~ 24048465 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU22263
CGTCGCTCTGGATTGGTCTGTTTCTGGACTCTTGGGAATGGTCTGATCAGTCCAATCTCAGTTTTAGACACTGGGACGCAGATCAACCATCACAGACTTCAGGATCTGGTGACTGTGTTGGCATGACAACAAACAATTCTGGGAAATGGACTCAAAAGAGCTGTGATCTACAGCAGCCTTTTATCTGCTATGGAGCTGACACCTTAATAAGAAAACAGATTGTACGTTTAAAGTTGTCCTGTAATGGGAAATGTACATTAAATGATCCCTCTCTACAGACTGCCTTTCTAAACATGATAAGTGAAAAACTGAAGAGCATGGGGCTAG
>XM_043222775.1
ATGAAGAGGATCCACAGTATGGATGGGAGTCTGTTTGTGCTGCTTGTGCTGTCAGGGCTTCTGAAGACCACTTCTGGTCTCTCTCGTCAGTACTACTATATAAATGCAAGAATGTCATGGCCAGAGGCTCAGAGTTACTGTAGAGCAAAGCACACTGATCTGGCTACTGTAGACAGCATGGATGATGCAAGCGGGCTGATAAATTTCGTGGATGCTGGATACAGTGGATCAGTGTGGATTGGACTGAAGAGGGGGACACAGAAACGCTGGGTTTGGTCTAATGGAGAAGATACACTTGCAGAGTACAAGGCCTGGGGTGCAGGAGAACCGAACATTCGAAACAATTGTAGCTTTCTTGCCTATGGAGTTTGGAATACTTTACAATGCTCATCTGTGATTTACTTTGCGTGCTACAATGAAAGCACTGGATACATTTCGGTAAAGATGTGGAAGAACTGGACAGATGCTCAGAGCTACTGCAGACAGCATTACACAGATCTGCCTACCATCCACAACGCTGTGGAACACAATCAGCTGAAGAGTGTTGTTTTGTCTACATCATGGGTCTGGATTGGTCTATTCCTGGACTACTGGGAATGGTCTGACAAATGGAGCAACTTCTTCAGATACTGGGCAGCAGGTCAACCACTTCAGAGATCAGGATCTGGTGACTGTGTTGGCATGACAACAGCCGATTCTGGGAAATGGATTCATGAAAGCTGTGATCTACACCATCCTTTTATCTGCCATGGATGGCCCAAGTCTCCTTACCGCACATACCAGTATATGAATGAAAGCATGATCTGGCAAGATGCACAGAGTTATTGCAGAGCGAGATTCACTGATCTGGCCACTGCTGACACCATGAATGATGTGAGAAGGCTAGTAAACATAGTGGATCCTGGATACAATGGATCAGTATGGATAGGTCTCCACACCGGGACTCAGTCTCGCTGGGTCTGGTCTATGGGGGAAGGCACAATCTCTAACTACACTATCTGGAACCCAGGAGAACCTAGTGGTGATGGGAAGTGTGTGAGGACTTTTAATGGAAGCTGGTATGATGAAAGCTGCAGCACTCATCTCCCATTTGTGTGTTTCAATGACAGCACTGGTTTTATTACAACTGAATCTGCCATGACATGGAGAGATGCTCAGAGTTACTGCAGACAACAACATACTGATTTAGCGAGCATCAGCAGCCCAGAGCAGCAGAATCTGCTCAGTAATGAATCGTCGCTCTGGATTGGTCTGTTTCTGGACTCTTGGGAATGGTCTGATCAGTCCAATCTCAGTTTTAGACACTGGGACGCAGATCAACCATCACAGACTTCAGGATCTGGTGACTGTGTTGGCATGACAACAAACAATTCTGGGAAATGGACTCAAAAGAGCTGTGATCTACAGCAGCCTTTTATCTGCTATGGAGCTGACACCTTAATAAGAAAACAGATTGTACGTTTAAAGTTGTCCTGTAATGGGAAATGTACATTAAATGATCCCTCTCTACAGACTGCCTTTCTAAACATGATAAGTGAAAAACTGAAGAGCATGGGGCTAGAAAGTGACAACATTAAATGGATACAGAGAGAAGACGAAGAGGTGTTTCATCTAGAGagcaaatatacagaaaaatcaAATAATCAGTGTAACAGGAAGTAATCATCAATGTACTTCTTTAAAG

Function

NR:

description
PREDICTED: macrophage mannose receptor 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU22263 False 327 lncRNA 0.48 3 24047800 24048342
XM_043222775.1 True 1684 mRNA 0.45 7 24045685 24048465

Neighbor

gene id symbol gene type direction distance location
LOC122324443 NA coding upstream 13482 24029004 ~ 24032203 (+)
LOC122328481 LOC107599284 coding upstream 48535 23995183 ~ 23997150 (+)
LOC122323657 NA coding upstream 113796 23929631 ~ 23931889 (+)
LOC122323665 NA coding upstream 120054 23920231 ~ 23925631 (+)
hes6 hes6,LOC107737402,LOC107572989,LOC107728379,LOC107569265,LOC107679391 coding upstream 259430 23783724 ~ 23786255 (+)
LOC122327432 LOC107549368 coding downstream 22744 24071209 ~ 24073204 (+)
LOC122324938 NA coding downstream 30691 24079156 ~ 24081504 (+)
LOC122326195 NA coding downstream 61198 24109663 ~ 24111683 (+)
LOC122327448 NA coding downstream 64312 24112777 ~ 24115107 (+)
LOC122327453 NA coding downstream 68277 24116742 ~ 24117634 (+)
G14996 NA non-coding upstream 22077 24009525 ~ 24023608 (+)
LOC122328489 LOC107750089,LOC107757802 non-coding upstream 50564 23994510 ~ 23995121 (+)
LOC122328496 NA non-coding upstream 51174 23993475 ~ 23994511 (+)
LOC122328475 NA non-coding upstream 59482 23985758 ~ 23986203 (+)
G14989 NA non-coding upstream 118072 23927294 ~ 23927613 (+)
G15026 LOC107600260,LOC107713623,LOC107757800,LOC107676328 non-coding downstream 92775 24141240 ~ 24141921 (+)
G15029 NA non-coding downstream 97669 24146134 ~ 24147389 (+)
G15039 LOC108433105 non-coding downstream 126820 24175285 ~ 24211058 (+)
G15041 NA non-coding downstream 138159 24186624 ~ 24250684 (+)
LOC122325249 NA non-coding downstream 172521 24220986 ~ 24231256 (+)
LOC122323670 NA other upstream 106669 23935921 ~ 23939016 (+)
G14831 LOC107679389,LOC107745621,LOC107567694,LOC108428304 other upstream 497711 23545106 ~ 23547974 (+)
LOC122324535 NA other upstream 1040431 23003165 ~ 23005254 (+)
fcer1gl LOC107671799 other upstream 1350355 22691199 ~ 22695330 (+)
LOC122327931 NA other upstream 1371410 22633529 ~ 22674275 (+)
LOC122327425 LOC107728372,LOC107569261,LOC107681443 other downstream 10947 24059412 ~ 24062202 (+)
LOC122327442 LOC107549368,LOC107569260,LOC107737397,LOC107681447,LOC107681444 other downstream 35373 24083838 ~ 24096897 (+)
abhd17aa abhd17aa,LOC107599293,LOC107757810,LOC107698472,LOC107600230,LOC108433103,LOC105904035,LOC108280794 other downstream 193407 24241872 ~ 24249991 (+)
G15065 rorcb,LOC107600225,LOC107757806,LOC107698501,LOC107713654,LOC107662989 other downstream 444973 24493438 ~ 24499685 (+)
zcchc2 zcchc2,LOC107713659,LOC107757820,LOC107599249 other downstream 639091 24687556 ~ 24754591 (+)

Expression


Co-expression Network