G15066 (rorcb,LOC107757806,LOC107662989)


Basic Information

Item Value
gene id G15066
gene name rorcb,LOC107757806,LOC107662989
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 24502752 ~ 24506398 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU22339
GACGCATTCTCGCAGTTTGAAACCTCTGCTCCGTTTTGTTCAGATCGGCCGTGGTTGACAGAGTCTCAGCAGGTTCAGAAGCTCCAGGAGAAGGTTTACGTGGCTCTTCAGCACAGCCTGCACATGAACGGAGCCACTGCTGAGAAACTGGATAAGATGGTGTCCAAACTACCGCAGATGAAATCCATCTGTAACCTGCATATTGACAAGCTGGAGTTCTTCCGCCTAGTTCACCCGGAGACAGCCTACAGCTTCCCACCTCTGTACAGGGAAGTGTTCGCAGCGACATCAACTTCCCTGACTCTACCAACAGTTAGAGAGAGGAGATAGCGAGGGGGAAAATGACAGAGAGTGTGTAGGGAAATCACGCAGTGAGCGTAAAGCGAGAGAGGGTCATTAcgtaaaaacagcatttcaattgaattttaaaaccTCCAGGAGAATCCTCAGTCTGTTGCAGCACTGTTAGCatacagacacgcacacacacaatacactaCAAACATGGGAGCCAACAAACTTTCAGATTTGACACTCATATAGAGTTTATTTCTGAGTTGTGCTCTCAGATCTCGGTTTATTTTAAGGAAACACTCGAAATGCTCTTTTTATGTACAGATGTATGCTTGCAAGGCCCTTCGTCCCAACTTGTAGCTGTCTAAGCATGCCACTGTTCCTTCTGCATCTGTACACAGAGATATTTAAAGGAGTTTATAAGaggttttataattttaataattttacaaggATCAAACTCTCAAAGCAAATACAACATACTAGATGACGTCAACTGCCCTTCGCCACTGAATCACTCTTTAAGCACtactattgcttttttttcctctatctCCCTTCGTTTTTTCATCCTCTGACGAATCATGAATGTATCCCAAAAGCACTTATTTTGATTTGAGACCTGAATGTACACAACGCACTTTTTTGGTCTTGCTTTATGCTTTATGAGACTTTGACAATCCactcatataaaaaaacagaaaaaaacaacttatgTGCCCAgattgtttgttaaaaatgaaggGACCAATGTTACCAATGCTACTTTAAAGGAACGTTTCACGTTAAATACAAGTCAAGCTCATTTcacgtttaaataaaaagcgtttaatttaatgaaagtagtcattatcaaaaataaaaccccaGTTTGTGAAAACGCACAAACAAATATTGACAGAAATGCACTTACAGTGGATGTCTATTGGGCAGCTTAACTGTATATATTAGCATCTGAGTTTAACTTGTATTTAACTTAgaattttctttaaactttaaaattttctttaaaatttaaagaaaactttaaagcTATTTAAACAAACCAGAAATCATAAGTGTGCTAAACTCTTTTCTAATGTGCAAtagaagtcatttttttttcattataagaGTGCAGTCATGGTCAAATATTTGTGAACGCTTTTTTGTTACAATAATGCAACAGCAACCACGAAATCctcattttaacagttatttacaTGATCACATACCACATGTTCAACAGAATTTGACTCGTTTAGTGCAGTATTAGATTAGTTAGTAAACAACATTTGCTTGCGACAGTGCTCAACAGGGCACATTGTTATATGCAAAGAGATATTCAACAAAAAACAGTCTTATATATTAAAGGGTTTGCAAACTTTGGCATGACTGTAAAGGATAGAGTGCGTTAGTGCCCGTCCACTTTTTCAGCAGTGCTGGTTTCCTGGAAgtgttttttctgttcatttttatttttacaataagtTTTGTAAAAGCGTTACAAGAAAAGAGCCAAACCAATGAGCTATGAGAAGAAATTGCAACATTACAAAGTTTGTTGaagcaaaaaatattgaaaattggACAATAACACAAAGGCTGAATGGCTAATGGTTTTAGTGAGGAGGGGAAAAAACTACAAATCCATGAAGCACTGCAACTGATAGCAGTTAGCAGTGATGGTGATTCCTTTTACTACTCATGTATCAATAAAACTATTCAGTTTTGGACTTAATTAGTACAAAGTATGATCTAAGtacgctttatttttttaagtatattgtATTTTGTAGTTCCCTCCGAGCTCTCTGATTGGTGGGATTGTCTGTACAGcttcatgggtaatgtagtttgtCATTACAAATTCCACTTTTAAACATGATTGTTTCAAAAATAAGGCCAAaaagctcaaaagaaaaaattctTCTGGAACCAGACTGTTGCACTCTTGACAAATACAAGATTTGATGCGTTTGTTCCACCCACACATGCTCTTGTTTGCTCAGGCACATTTTGACAGTGTTTGGTGCTGcaccttattttttttgttgtcattttaatgcaatgagAAACCTCAGTCCCACGTCCCCTTCCCTTGTAAATGCCACTTtagaatataaacaaaaaaatagttcaatgttcatttaatttttatggaCATTTCTAAAAGATTATTTTGAATaggaatgtaaataaattagtatattTAGTCAGGAAAGAGATGGAATGGTGGAGCAGGATGAAAGGCAGAGATGTTAAAGATGAGCCAGGACTTTCATTAGCCGGCTTTTGAGTACCTCCGGCGTGTGCACGGGAATACCGGACTTAAAACATGAACTGGCATGAATTTTGTTCTGGAGCTGCCCTCTGTGAGCGATTCTGAGGGAACGCTTACAGGAGACGGACAGTTATTCTCCAGAACCAAGCTGGATGGCTTTCAACAGCTTGTTCTCTgggacacacacagagctggGGGCGACCCTGATGACCCCAGTCTGATGCTATGAGACACTTCCTCCAATAGGATCGCCTGCCTGGTGGACTTCAAACGCTAAACCAGTGTTTTTCAGAAACGAACGAGAGAAACGGATTCTAAAGCTCAGTCCAGCAGGTTTCGGGTTCAGATATGC

Function

symbol description
rorcb Predicted to enable RNA polymerase II cis-regulatory region sequence-specific DNA binding activity and nuclear receptor activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in intestinal bulb; nervous system; and presumptive diencephalon. Human ortholog(s) of this gene implicated in immunodeficiency 42. Orthologous to human RORC (RAR related orphan receptor C).

NR:

description
RAR-related orphan receptor C b

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU22339 True 2909 lncRNA 0.57 2 24502752 24506398

Neighbor

gene id symbol gene type direction distance location
LOC122327453 NA coding upstream 385118 24116742 ~ 24117634 (+)
LOC122327448 NA coding upstream 387645 24112777 ~ 24115107 (+)
LOC122326195 NA coding upstream 391069 24109663 ~ 24111683 (+)
LOC122324938 NA coding upstream 421248 24079156 ~ 24081504 (+)
LOC122327432 LOC107549368 coding upstream 429548 24071209 ~ 24073204 (+)
LOC122325496 LOC107698467,LOC107713624,LOC107600258 coding downstream 42897 24549295 ~ 24551538 (+)
LOC122327477 LOC107653347,LOC107731078,LOC107585662,LOC107568542,LOC107675751 coding downstream 113589 24619987 ~ 24626282 (+)
viml viml,LOC107656138,LOC107600213,LOC107599242,LOC107757824 coding downstream 336380 24842778 ~ 24849115 (+)
pde1cb pde1cb,pde1c,LOC107713666,LOC108280739,LOC108433077,LOC107712805,LOC107663536,LOC107599240,LOC107757825 coding downstream 344365 24850763 ~ 24919804 (+)
neurod6b neurod6b,LOC107713643,LOC107656134,LOC107599290,LOC107663516,LOC107757826,LOC107600270 coding downstream 425184 24931582 ~ 24934535 (+)
G15067 LOC107698501,LOC107600225,LOC107713654,LOC107757806,LOC107662989,LOC108280913 non-coding upstream 1436 24500239 ~ 24501316 (+)
LOC122326923 NA non-coding upstream 67097 24427986 ~ 24435655 (+)
G15059 NA non-coding upstream 80740 24255205 ~ 24422012 (+)
G15058 NA non-coding upstream 250938 24251145 ~ 24251814 (+)
G15041 NA non-coding upstream 252068 24186624 ~ 24250684 (+)
G15069 NA non-coding downstream 1488 24507886 ~ 24513061 (+)
G15071 NA non-coding downstream 17026 24523424 ~ 24602792 (+)
G15165 NA non-coding downstream 282487 24788885 ~ 24840993 (+)
G15169 NA non-coding downstream 290415 24796813 ~ 24797564 (+)
G15189 LOC107757823 non-coding downstream 306901 24813299 ~ 24816430 (+)
G15065 rorcb,LOC107600225,LOC107757806,LOC107698501,LOC107713654,LOC107662989 other upstream 3067 24493438 ~ 24499685 (+)
abhd17aa abhd17aa,LOC107599293,LOC107757810,LOC107698472,LOC107600230,LOC108433103,LOC105904035,LOC108280794 other upstream 252761 24241872 ~ 24249991 (+)
LOC122327442 LOC107549368,LOC107569260,LOC107737397,LOC107681447,LOC107681444 other upstream 405855 24083838 ~ 24096897 (+)
LOC122327425 LOC107728372,LOC107569261,LOC107681443 other upstream 440550 24059412 ~ 24062202 (+)
LOC122327416 LOC107728372,LOC107569261,LOC107681443 other upstream 454287 24045685 ~ 24048465 (+)
zcchc2 zcchc2,LOC107713659,LOC107757820,LOC107599249 other downstream 181158 24687556 ~ 24754591 (+)
G15224 abhd4,LOC107713680,LOC107663512,LOC107655861 other downstream 664338 25170736 ~ 25175288 (+)
LOC122362952 LOC107713688,LOC107600193,LOC107558294,LOC100331938,LOC107729982,LOC107655843,LOC107696796 other downstream 715746 25222144 ~ 25236609 (+)
LOC122327519 hecw1b,hecw1,LOC107600217,LOC107662981,LOC108280656,LOC107576258,LOC107656133 other downstream 887758 25394156 ~ 25406903 (+)
LOC122362387 LOC107722547,LOC107680242,LOC107550619,LOC107688474,LOC107709878 other downstream 985862 25492260 ~ 25516180 (+)

Expression


Co-expression Network