LOC122327519 (hecw1b,hecw1,LOC107600217,LOC107662981,LOC108280656,LOC107576258,LOC107656133)


Basic Information

Item Value
gene id LOC122327519
gene name hecw1b,hecw1,LOC107600217,LOC107662981,LOC108280656,LOC107576258,LOC107656133
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 25394156 ~ 25406903 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU22800
tttggcacGCTCAGACTGGGAGGCCCGTATTGACAGTCACGGCCGTGTGTTTTATGTGGATCACATTAACCGGACCACCACTTGGCAACGGCCAACGTCCGCTGCCACGCCGGATGGCCTTCGCAGGTCTGGTTCCGTCCAACAGATGGAGCAGCTCAACAGGAGATACCAGACCATCCAGAGGACGATGGCCACAGAGAGAAGAGACGAGGAGTCAGGCAGCCCACGCAACGAGAGAACAGCCAGCACCGAGACAGACTCGCCTCCACAGACAACCGaGTTGAGGAGAGACACTCCATGTTCTCCAGGTCACTGTCAGAAGATCACATTACTGCTGCAGAGTCCCGCGGTCAAATTCATCACTCACCCAGAGTTCTTCACCGTTCTCCACGCAAACTATgggGCATATCGTATGTTCACCAACAGCTCGTGTCTGAAACACATGGTCCTAAAGATCAGGCGTGATGCCCGAAACTTTGAGCGTTACCAGCACAACCGTGACCTGGTGACCTTCTTGAACAGGTTTGCTGATGCTCAGTTGGAGCTGCCTCGTGGCTGGGAGATCAAAACAGACCCGCAGGGGAAGTCTTTCTTTGTAGACCACAACAGTCGTGCCACAACCTTCATTGATCCCAGGATCCCCCTGCAAAACGGCAGATTGCCCAACCACCTGACGCACCGCCAGCACCTGCAGAGATTACGCAGCTACAGCGCAGGAGAGgCATCTGAGGTGTCACGCACCAGAGGGGTGTCCTTGTTAGCCAGGCCTGGAAACAGCCTGGTAGCAGCCATACGAAACCAAAGCCAGCAGGAGCCAGTGCCATTAG
>XM_043222945.1
atgtgtatgtACTGGGAGGCCCGTATTGACAGTCACGGCCGTGTGTTTTATGTGGATCACATTAACCGGACCACCACTTGGCAACGGCCAACGTCCGCTGCCACGCCGGATGGCCTTCGCAGGTCTGGTTCCGTCCAACAGATGGAGCAGCTCAACAGGAGATACCAGACCATCCAGAGGACGATGGCCACAGAGAGAAGAGACGAGGAGTCAGGCAGCCCACGCAACGAGAGAACAGCCAGCACCGAGACAGACTCGCCTCCACAGACAACCGaGTTGAGGAGAGACACTCCATGTTCTCCAGGTCACTGTCAGAAGATCACATTACTGCTGCAGAGTCCCGCGGTCAAATTCATCACTCACCCAGAGTTCTTCACCGTTCTCCACGCAAACTATgggGCATATCGTATGTTCACCAACAGCTCGTGTCTGAAACACATGGTCCTAAAGATCAGGCGTGATGCCCGAAACTTTGAGCGTTACCAGCACAACCGTGACCTGGTGACCTTCTTGAACAGGTTTGCTGATGCTCAGTTGGAGCTGCCTCGTGGCTGGGAGATCAAAACAGACCCGCAGGGGAAGTCTTTCTTTGTAGACCACAACAGTCGTGCCACAACCTTCATTGATCCCAGGATCCCCCTGCAAAACGGCAGATTGCCCAACCACCTGACGCACCGCCAGCACCTGCAGAGATTACGCAGCTACAGCGCAGGAGAGGCGTCAGAGGTGTCCCGCAGCAGAGGAGCGTCTCTGGTCAGCAGAGCGGTCAGGAGTCAGTATCAGCCTGATTCAGTGCCTCTAGCTTACAATGATAAGATCGTGTCTTTCCTGCGTCAGCCGAACATCCTGGAGCTGCTGCAGGAGCGTCAGCCGAGTCTGGCCAGGAATCACTCGCTCAGGGAGAAAATCCATTACATCAGAAGCGAAGGTCCTCAGAGCGTTGAAAAGCTGTCCTGCGACGCCGACCTGGTCATGCTGTTAAGTCTGTTTGATGAGGAGATCATGTCGTATATTCCATCTCACTCTTTCCACCCCGGCCTCAGTTTCTCTCCACGCTGCTCTCCTGGATCCTCACCTCAGAGTTCACCGGGCTTGCAGAGGGCCAGAGCGCCTGCTCCGTACCGCAGGGACTTTGAGGCAAAGCTTCGCAATTTTTACAGAAAGCTGGAGGCTAAAGGCTATGGCCAGGGGCCAGGGAAAATCAAGCTCATCATCAGAAGAGAACATCTACTGGAAGGCACTTTTAATCAAGTAATGGTCTACTCACGCAAAGAGCTCCAGAGAAACAAGCTCTACATCACCTTTGTCGGAGAAGAAGGTTTGGATTACAGTGGCCCATCGCGGGAGTTCTTCTTCCTGTTATCTCAGGAGCTGTTTAACCCCTACTACGGTCTGTTTGAGTACTCGGCCAATGACACGTACACAGTGCAGATCAGccccatgtctgcatttgtagAAAACCATTTGGAATGGTTCCGTTTCAGTGGCCGTATTTTGGGTCTGGCTCTGATCCACCAGTATCTGTTGGATGCCTTCTTCACTCGACCGTTCTACAAGGCCCTGCTCAGACTAGTGACAGATCTGAGTGATTTGGAATACCTGGATGAAGAGTTCCATCAGAGCCTGCAGTGGATGAAGGACAACGATATCACGGATATCCTGGATCTGACGTTTACAGTCAACGAGGAGGTCTTCGGACAGGTCATAGAGAGGGAACTGAAGTCGGGAGGCTCCAATACCCAAGTGACGGAAAAGAACAAGAAGGAATACATTGAGCGCATGGCGAGATGGAGGGTGGAGAGGGGGGTTATGCAGCAGACCGAAGCCCTTGTAAGAGGTTTCTATGAGGTTGTAGACTCCCGTCTGGTTTCAGTGTTCGATGCTCGTGAGCTGGAGTTGGTCATTGCAGGCACGGCTGAGATCGATTTGAATGACTGGAGATCCAACACAGAATACAGAGGAGGTTACCATGATGGGCACGCTGTGATTCGTAGTTTCTGGGATGCGGTGGAACGCTTCAATAATGAACAGAGGCTGCGCCTGCTGCAGTTCGTGACGGGAACGTCCAGTGTCCCTTACGAGGGTTTCGCTGCGCTCCGTGGGAGCAACGGCCTGCGGCGCTTCTGCATTGAAAAGTGGGGAAAGATTACCTCTCTGCCAAGATCCAAAGGCTGA

Function

symbol description
hecw1b Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in several processes, including cellular protein metabolic process; negative regulation of sodium ion transmembrane transporter activity; and regulation of dendrite morphogenesis. Predicted to be active in cytoplasm. Orthologous to human HECW1 (HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1).
hecw1 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in several processes, including cellular protein metabolic process; negative regulation of sodium ion transmembrane transporter activity; and regulation of dendrite morphogenesis. Located in cytosol.

NR:

description
E3 ubiquitin-protein ligase HECW1 isoform X3

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0004842 ubiquitin-protein transferase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU22800 False 827 TUCP 0.56 6 25394331 25397882
XM_043222945.1 True 2175 mRNA 0.53 19 25394156 25406903

Neighbor

gene id symbol gene type direction distance location
LOC122363040 abhd4,LOC107713680,LOC107663512,LOC107655861,LOC107729967 coding upstream 89433 25300200 ~ 25304723 (+)
crygn1 crygn1,LOC107600194,LOC107713687,LOC107655847,LOC107558278,LOC107696799,LOC107729968 coding upstream 174533 25216488 ~ 25219623 (+)
lrrc24 lrrc24,LOC107713676,LOC107655866,LOC107600207,LOC107757831,LOC107599237,LOC107663504 coding upstream 283380 25089791 ~ 25110776 (+)
eef1da eef1da,LOC107713671,LOC107757829,LOC107663523,LOC107599238,LOC107600209,LOC107655868 coding upstream 331646 25051270 ~ 25062510 (+)
trnal-uaa_14 NA coding upstream 343517 25050557 ~ 25050639 (+)
LOC122322894 zcchc2,LOC107757820,LOC107662991,LOC107599249,LOC107713659 coding downstream 8616 25415519 ~ 25419928 (+)
LOC122358952 LOC107586591,LOC107722548 coding downstream 164238 25571141 ~ 25574135 (+)
LOC122358930 crtc1a,LOC107709901,LOC107680255,LOC107722627,LOC107585074 coding downstream 173897 25580800 ~ 25591012 (+)
G15250 LOC107713636,LOC107655860 non-coding upstream 63869 25190020 ~ 25330287 (+)
G15225 NA non-coding upstream 183340 25105703 ~ 25210816 (+)
G15226 NA non-coding upstream 187226 25199691 ~ 25206930 (+)
G15233 LOC107600201 non-coding upstream 236921 25149255 ~ 25157235 (+)
G15240 NA non-coding upstream 249150 25123300 ~ 25145006 (+)
G15392 NA non-coding downstream 58547 25465450 ~ 25595289 (+)
LOC122362952 LOC107713688,LOC107600193,LOC107558294,LOC100331938,LOC107729982,LOC107655843,LOC107696796 other upstream 157547 25222144 ~ 25236609 (+)
G15224 abhd4,LOC107713680,LOC107663512,LOC107655861 other upstream 218868 25170736 ~ 25175288 (+)
zcchc2 zcchc2,LOC107713659,LOC107757820,LOC107599249 other upstream 639565 24687556 ~ 24754591 (+)
G15065 rorcb,LOC107600225,LOC107757806,LOC107698501,LOC107713654,LOC107662989 other upstream 894471 24493438 ~ 24499685 (+)
abhd17aa abhd17aa,LOC107599293,LOC107757810,LOC107698472,LOC107600230,LOC108433103,LOC105904035,LOC108280794 other upstream 1144165 24241872 ~ 24249991 (+)
LOC122362387 LOC107722547,LOC107680242,LOC107550619,LOC107688474,LOC107709878 other downstream 85357 25492260 ~ 25516180 (+)
G15410 crsp7,LOC107722610,LOC107688472,LOC107585090,LOC107550620 other downstream 192558 25599461 ~ 25599926 (+)

Expression


Co-expression Network