LOC122322894 (zcchc2,LOC107757820,LOC107662991,LOC107599249,LOC107713659)


Basic Information

Item Value
gene id LOC122322894
gene name zcchc2,LOC107757820,LOC107662991,LOC107599249,LOC107713659
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 25415519 ~ 25419928 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043216497.1
GAGTAATCTGGCAAACTGACCACAGCCACACCGTCAGACTACAGACAGCAAATTTATACGAAATTCCGCCCCGAATCGGGAATTTCATCGCATTTTGATGCCGAAATATTGGCCGGAAAGTACCATCCATGGACTTCCATCTCTGATGTTCGCGTTTGAGAGCTGataatgatgaagatgaagctgCGAGCGGCGGGAGGCGAAAATCACCGATGCGACTTGAATTCCGTTAACGGATCCGATCGGGAGAGCGGCACCGGAGCGGCTCAGCTCGACAAGGAGGCGGTGTTCGAGTGGTTCGGCTTACAGCTGAACCCGTCCGGACGCGTGGAGCTGCTTTGCGGGCTGCTGCATATGTGTCAGCCGCTGGAGCTACGCTTCCTCGGCGCCTGTCTGGAGGATCTGGCCCGGAGAGATTTCACCGTCCTGCGGGATTATGAGATCCGGGCCAACTGCCCCGCTGATCTGGAGGGGCTGGTGGACGTAAGCGACCCCGTCGTGCTGTCCAAACTGCTCGTTTATTTGTCTCTGCTCGGATCCAAGAGCAGGGAATGCGCCGGGATTCTCTTCAGGACGTTGAGTCGAATGGACGCCGGGATGTGCGGCGCTCTACCGGAGCCGGAGACTGTGGATCAACTGCGACTGCTCTTCACGATGGGATCGTTACACCCGGCGTTCAGTTTCTATCAGCGGGAAGAGCTGCGAGCGCAGTTGGACAGGCTCCAAAGATGGagcCAGTTTTCCAGGCCGGGGTTCCTCTGTCCACACCGGGAGAATGACGTAGACTGGACACTTTGCAGCAACGCCAATCCACACCTCAGCGGCACGTCGCAGAGGGAAGTTGTGCACATTGAGAAGATCATTCTGAAGGAGGTTTCTATGGGAGGAGACGGCAGGCAGTACAGTTTTGAGGTAAGTTCAAAAACCCATCAGAGACGCTGAGTTTCAATGCTGACATTTCATCTAAAAGAAGCTTAGAGAGCTCCAGGATTGTGGGAAATGATTTACAGTGATATGTACCCAGTAGTATGTCAAGCCGATAAGAGAAAGTCTCAGAAAGTGAAGTTACCGATTTTCTACAGAATTCAAATGACTGCATTTTTGAATTGAAAgttaattagtaaataaatacagcaatattt

Function

symbol description
zcchc2 Predicted to enable nucleic acid binding activity and zinc ion binding activity. Orthologous to human ZCCHC2 (zinc finger CCHC-type containing 2).

NR:

description
PREDICTED: zinc finger CCHC domain-containing protein 2-like

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043216497.1 True 1142 mRNA 0.52 3 25415519 25419928

Neighbor

gene id symbol gene type direction distance location
LOC122363040 abhd4,LOC107713680,LOC107663512,LOC107655861,LOC107729967 coding upstream 110796 25300200 ~ 25304723 (+)
crygn1 crygn1,LOC107600194,LOC107713687,LOC107655847,LOC107558278,LOC107696799,LOC107729968 coding upstream 195896 25216488 ~ 25219623 (+)
lrrc24 lrrc24,LOC107713676,LOC107655866,LOC107600207,LOC107757831,LOC107599237,LOC107663504 coding upstream 304743 25089791 ~ 25110776 (+)
eef1da eef1da,LOC107713671,LOC107757829,LOC107663523,LOC107599238,LOC107600209,LOC107655868 coding upstream 353009 25051270 ~ 25062510 (+)
trnal-uaa_14 NA coding upstream 364880 25050557 ~ 25050639 (+)
LOC122358952 LOC107586591,LOC107722548 coding downstream 151213 25571141 ~ 25574135 (+)
LOC122358930 crtc1a,LOC107709901,LOC107680255,LOC107722627,LOC107585074 coding downstream 160872 25580800 ~ 25591012 (+)
G15250 LOC107713636,LOC107655860 non-coding upstream 85232 25190020 ~ 25330287 (+)
G15225 NA non-coding upstream 204703 25105703 ~ 25210816 (+)
G15226 NA non-coding upstream 208589 25199691 ~ 25206930 (+)
G15233 LOC107600201 non-coding upstream 258284 25149255 ~ 25157235 (+)
G15240 NA non-coding upstream 270513 25123300 ~ 25145006 (+)
G15392 NA non-coding downstream 45522 25465450 ~ 25595289 (+)
LOC122327519 hecw1b,hecw1,LOC107600217,LOC107662981,LOC108280656,LOC107576258,LOC107656133 other upstream 8616 25394156 ~ 25406903 (+)
LOC122362952 LOC107713688,LOC107600193,LOC107558294,LOC100331938,LOC107729982,LOC107655843,LOC107696796 other upstream 178910 25222144 ~ 25236609 (+)
G15224 abhd4,LOC107713680,LOC107663512,LOC107655861 other upstream 240231 25170736 ~ 25175288 (+)
zcchc2 zcchc2,LOC107713659,LOC107757820,LOC107599249 other upstream 660928 24687556 ~ 24754591 (+)
G15065 rorcb,LOC107600225,LOC107757806,LOC107698501,LOC107713654,LOC107662989 other upstream 915834 24493438 ~ 24499685 (+)
LOC122362387 LOC107722547,LOC107680242,LOC107550619,LOC107688474,LOC107709878 other downstream 72332 25492260 ~ 25516180 (+)
G15410 crsp7,LOC107722610,LOC107688472,LOC107585090,LOC107550620 other downstream 179533 25599461 ~ 25599926 (+)

Expression


Co-expression Network