gadd45aa (gadd45aa,LOC107716939,LOC107700510,LOC107743369,LOC107684937,LOC107551712)


Basic Information

Item Value
gene id gadd45aa
gene name gadd45aa,LOC107716939,LOC107700510,LOC107743369,LOC107684937,LOC107551712
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 7301516 ~ 7303686 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043216737.1
TCTCGGGGAAATTAAATCTAACGTAACTCCTCTCAACGTCAGATTTAGCCGGTGACACTCAGAGAAAGAAGAACTACGAGAACGCTGCTGGATTTACTCTGTTGTCAAAGGAAAGTCATTCAAGACAGTTCTGGATTTTAGGTGCAATATGACGTTTGAAGAACTTAATGGAGATTACTCGATTGAAAGGATGGAGTCTGTGATTAAAGCTCTGGAGGAGGTCCTGCGCTCCGCGTTACCTCAAGGCTGTATTACAGTTGGGGTCTACGAGGCTGCAAAGTCACTCAATGCTGACCCCGACAACGTGGTGCTGTGCATCTTGGCCACAGACGACGACGACGTTAAAGACGTCGCGCTTCAGATCCACTTCACTCTCATTCAGGCTTTCTGCTGCGAGAACGACATCAACATCCTGAGAGTCAACAACACGCGGAGCCTCGCGCACATCCTCGGGGGCGCCGGCATGCACGAGAGCGAGCAAATGGACCTGCACTGCATTCTGGTCACTGTTCCACACGCGTCCACGTGGAAGAACCCAGCTTTGGGGAAAGTGAACCGTTTCTGCAGAGAGAGTCGCTGTATGGATCAATGGGTACCCATTATTAACCTTCCAGAACGATGAGGACAGCAAATACAAGGGGAAAACatggatttaaaaaatctagtaaaaaataataaaagcttaaaaaggTGGTCACAAAAAGGACTGATAGTCCAGACTGGTGGAAGTAGGCCCTAACCTACAGAATGAACTGGAGGAGGAGCACCCTTTTGCAATCTGAGATGATTCAGCagtttttggctttgtttgtggGACTTTTTGAGGACGTCACAGGAAGCTGATTGTGAATGGAAGTGAGCACCTGACTATCTTGTGAGTTTATAGGTCGGGGTGTCATAAAGCACTTCAGGTAATTACAGGATGAAATATTTCTCAGGCAACACATTATCagaggtaatttttttttaaagaagctgCCCTATCTTTTGTATTTTGCCATTATTAAtgttggaaaataaattattttaaatgaacttgaTTCTAAACCACTGAGATGGAAA

Function

symbol description
gadd45aa Acts upstream of or within paraxial mesoderm development. Predicted to be active in cytoplasm and nucleus. Is expressed in several structures, including endoderm; eye; intestine; otic placode; and solid lens vesicle. Orthologous to human GADD45A (growth arrest and DNA damage inducible alpha).

NR:

description
PREDICTED: growth arrest and DNA damage-inducible protein GADD45 alpha

GO:

id name namespace
GO:0051726 regulation of cell cycle biological_process
GO:0006950 response to stress biological_process
GO:0048339 paraxial mesoderm development biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K04402 GADD45; growth arrest and DNA-damage-inducible protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043216737.1 True 1062 mRNA 0.45 4 7301516 7303686

Neighbor

gene id symbol gene type direction distance location
evi5a evi5,LOC107716937 coding downstream 98243 7189914 ~ 7203273 (-)
gfi1aa gfi1,gfi1aa,LOC107694374,LOC107743364,LOC107568083,LOC107716936 coding downstream 112313 7185526 ~ 7189203 (-)
glmna glmn,glmna coding downstream 124564 7170939 ~ 7176952 (-)
tceanc2 tceanc2 coding downstream 137294 7161242 ~ 7164222 (-)
mrpl37 mrpl37 coding downstream 144686 7151845 ~ 7156830 (-)
nsun4 nsun4,LOC107684939,LOC107700511,LOC107551708,LOC107577791 coding upstream 48540 7352226 ~ 7356167 (-)
pif1 pif1,LOC107551719,LOC107716931 coding upstream 53736 7357422 ~ 7367720 (-)
LOC122357527 artn,LOC107743380,LOC107684941,LOC107551717,LOC107700541,LOC107564390 coding upstream 90666 7394352 ~ 7407917 (-)
st3gal3b st3gal3b,LOC107551715,LOC107743372 coding upstream 111756 7415442 ~ 7459592 (-)
ptprfb ptprfb,LOC107710549,LOC107564386,LOC107700544 coding upstream 278396 7582082 ~ 7690575 (-)
G10029 rpl5,LOC107568084,LOC107694375,LOC107743362,LOC107716952 non-coding downstream 95114 7204484 ~ 7206402 (-)
G9997 NA non-coding downstream 149813 7149801 ~ 7151703 (-)
G9972 NA non-coding downstream 192224 7107227 ~ 7109292 (-)
G9971 NA non-coding downstream 194378 7106911 ~ 7107138 (-)
G9970 NA non-coding downstream 194671 7106618 ~ 7106845 (-)
G10165 NA non-coding upstream 222653 7526339 ~ 7532065 (-)
LOC122328801 NA non-coding upstream 485051 7788737 ~ 7791610 (-)
G10185 NA non-coding upstream 630715 7934401 ~ 7934625 (-)
G10194 NA non-coding upstream 766468 8070154 ~ 8070353 (-)
G10345 NA non-coding upstream 1326720 8630406 ~ 8630606 (-)
dipk1aa fam69a,fam69aa,LOC107716951,LOC107568082,LOC108436064,LOC107694372,LOC107743375,LOC108280758 other downstream 77777 7206542 ~ 7223739 (-)
lhx8a lhx8,lhx8a,LOC107693563,LOC108436043 other downstream 288302 7009583 ~ 7013214 (-)
G9926 LOC107563058,LOC107549254,LOC108267243 other downstream 313403 6986301 ~ 6988113 (-)
G9894 NA other downstream 472514 6828490 ~ 6829002 (-)
G9891 NA other downstream 559343 6741683 ~ 6742173 (-)
G10170 kdm4ab,LOC107564389,LOC107700543,LOC107551714,LOC107684932,LOC107743373 other upstream 188520 7492206 ~ 7493844 (-)
G10178 NA other upstream 480782 7784468 ~ 7785154 (-)
G10196 NA other upstream 767090 8070776 ~ 8071834 (-)
G10213 NA other upstream 803170 8106856 ~ 8107788 (-)
zfyve9a LOC107700554,LOC107563295,LOC107677579,LOC107553256,LOC107732202 other upstream 1099641 8403327 ~ 8427904 (-)

Expression


Co-expression Network