sh3glb1b (sh3glb1b,LOC107700566,LOC107710622,LOC107578300,LOC107677816,LOC107732941,LOC107553268)


Basic Information

Item Value
gene id sh3glb1b
gene name sh3glb1b,LOC107700566,LOC107710622,LOC107578300,LOC107677816,LOC107732941,LOC107553268
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 8879439 ~ 8886277 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043216764.1
GAGCTTGTCCTTCCTCACACTCCCTCACTCCTAAAAGCGGCTGCTCTTCGCTAGTAGCTACACCTCAATACCTCTCTACCAGACAGCCTTAACACAGCTTTACacgtttatttttagtttcttgGTTATCTTCCCGGTCGCGTTTTTACATGGACTACACGCTGCTTACGACAAAGCGAGCTGAATTCAAAAGTGTTTTGGCCGGGCGAAGAGAGGCTACAGCAGGCTAATCTGCGTTTGCTAACAGGCTTCAGATCAGACCGATCGTTCGAAACATCAGTGTTTTATAAACGGCACAGACATGGAGTTCAACGTAAGACGGCTAGCAGCGGACGCGGGCACTTTCCTCAGTCGTGCTGTCCAgTTCACAGAGGAGAAGTTTGGGCAGGCAGAGAAGACCGAGCTGGACGCCCATCTAGAGATCCTTTTGAGTAGGGCAGAATCCACCAAGCACTGGACAGAGAAGATCATGAAGCAGACAGAAGTTTTGCTGCAGCCGAACCCTAATGTCCGGATGGAGGAGTTCCTTTACGAGATGCTGGACAAAAAAGTCCCAATGCGTGCCAACAACCACGAGTTACTGGGGGAGTGCATGATCGACTCTGGCCACGAGTTTGGACCTGGAACAGCATACGGTAGTGCTCTCATTAAATGTGGGGAGACTGAGAAGCTGTTAGGCAGTGCAGAAAAAGAGTTCATTCAGAGCTCCGCCATTAATTTCCTCACTCCCTTTAGGAACTTCATCGAGGGAGATTTTAAAACCATATCGaaagaaCGCAAACTGCTTCAGAATAAGCGTCTAGATCTGGATGCTGCCAAAAACCGAATGAAGAAGGCCAGGGTGGCTGACGCTCGATCTGCAGAGCTGAACTCAAGCCCTCCGCTGGGAGAGGAGTATGTGGCTCACTTTTCTTACATGCTCGGCTTCTTGCATGTCAGGTGGCTAAAGCTGTGGGCTGAGGAGGTAAAGCAGGCAGAGACGGAACTGAGGATAGCACAGAGTGAGTTTGACCGGCAGGCTGAGATCACCAGACTTCTGCTGGAGGGCATCAGCAGCACTCATGCTCATCACTTGCGCTGTCTGAATGACTTTGTGGACGCCCAAGCCTCATATTACGCCCAGTGCTACCAGTACATGGTCAATCTTCAGAAACAGCTGGGAAGCTTTCCATCTACGTTCTCTAACAACAATCAGCCGTCCGGCGGCTCCTCCGCCAGCATCTCTGTTCCCACGGCACAGCCGGCCGCCTCACTGCCCGCCCCGCCGCCCAGCCAGACGTCACCCGCGCTCAACGAGCTCCGCAGCACCTCAGGCACCCGCAAGGCCCGTGTGCTCTACGACTACGACGCCGCCAGCAGCAGCGAGCTCTCTCTACTCGCCGACGAGGTGATCACGGTGAGCAGCGTGCCAGGCATggactctgattggctgatgggGCAAAGGGGGAATCAGAAAGGCAAAGTGCCAATTACCTACTTGGAGCTGCTCAATTAAGGTCAGCGAGaagtacaacaaaaacaaattcacattGTAGATGTGATTTGACAAGAGTAACACTCCAGATGTGATCCGAGAGTTTAATGTAGCGCAAAGCAATATAAAAGTCTTCTACACTGCCATGTCCTGTTGTGTGAACGTCTCCTCTGCCATGCGAGGGTGTCATAGTAGCCTTACAGTAAAGAAAAGCAGGCTGAGATTGCCAACTATTCATCAGTTACGTGCCaacggatttttttttttttactgctaaaCTAATTGATTGTGCTATACTGTGCTATGATGctctaataaatattatatgaaccTGG
>XM_043216773.1
TTGTCCTTCCTCACACTCCCTCACTCCTAAAAGCGGCTGCTCTTCGCTAGTAGCTACACCTCAATACCTCTCTACCAGACAGCCTTAACACAGCTTTACacgtttatttttagtttcttgGTTATCTTCCCGGTCGCGTTTTTACATGGACTACACGCTGCTTACGACAAAGCGAGCTGAATTCAAAAGTGTTTTGGCCGGGCGAAGAGAGGCTACAGCAGGCTAATCTGCGTTTGCTAACAGGCTTCAGATCAGACCGATCGTTCGAAACATCAGTGTTTTATAAACGGCACAGACATGGAGTTCAACGTAAGACGGCTAGCAGCGGACGCGGGCACTTTCCTCAGTCGTGCTGTCCAgTTCACAGAGGAGAAGTTTGGGCAGGCAGAGAAGACCGAGCTGGACGCCCATCTAGAGATCCTTTTGAGTAGGGCAGAATCCACCAAGCACTGGACAGAGAAGATCATGAAGCAGACAGAAGTTTTGCTGCAGCCGAACCCTAATGTCCGGATGGAGGAGTTCCTTTACGAGATGCTGGACAAAAAAGTCCCAATGCGTGCCAACAACCACGAGTTACTGGGGGAGTGCATGATCGACTCTGGCCACGAGTTTGGACCTGGAACAGCATACGGTAGTGCTCTCATTAAATGTGGGGAGACTGAGAAGCTGTTAGGCAGTGCAGAAAAAGAGTTCATTCAGAGCTCCGCCATTAATTTCCTCACTCCCTTTAGGAACTTCATCGAGGGAGATTTTAAAACCATATCGaaagaaCGCAAACTGCTTCAGAATAAGCGTCTAGATCTGGATGCTGCCAAAAACCGAATGAAGAAGGCCAGGGTGGCTGACGCTCGATCTGCAGCAGAGACGGAACTGAGGATAGCACAGAGTGAGTTTGACCGGCAGGCTGAGATCACCAGACTTCTGCTGGAGGGCATCAGCAGCACTCATGCTCATCACTTGCGCTGTCTGAATGACTTTGTGGACGCCCAAGCCTCATATTACGCCCAGTGCTACCAGTACATGGTCAATCTTCAGAAACAGCTGGGAAGCTTTCCATCTACGTTCTCTAACAACAATCAGCCGTCCGGCGGCTCCTCCGCCAGCATCTCTGTTCCCACGGCACAGCCGGCCGCCTCACTGCCCGCCCCGCCGCCCAGCCAGACGTCACCCGCGCTCAACGAGCTCCGCAGCACCTCAGGCACCCGCAAGGCCCGTGTGCTCTACGACTACGACGCCGCCAGCAGCAGCGAGCTCTCTCTACTCGCCGACGAGGTGATCACGGTGAGCAGCGTGCCAGGCATggactctgattggctgatgggGCAAAGGGGGAATCAGAAAGGCAAAGTGCCAATTACCTACTTGGAGCTGCTCAATTAAGGTCAGCGAGaagtacaacaaaaacaaattcacattGTAGATGTGATTTGACAAGAGTAACACTCCAGATGTGATCCGAGAGTTTAATGTAGCGCAAAGCAATATAAAAGTCTTCTACACTGCCATGTCCTGTTGTGTGAACGTCTCCTCTGCCATGCGAGGGTGTCATAGTAGCCTTACAGTAAAGAAAAGCAGGCTGAGATTGCCAACTATTCATCAGTTACGTGCCaacggatttttttttttttactgctaaaCTAATTGATTGTGCTATACTGTGCTATGATGctctaataaatattatatgaaccTGG
>XM_043216781.1
TGAGCTTGTCCTTCCTCACACTCCCTCACTCCTAAAAGCGGCTGCTCTTCGCTAGTAGCTACACCTCAATACCTCTCTACCAGACAGCCTTAACACAGCTTTACacgtttatttttagtttcttgGTTATCTTCCCGGTCGCGTTTTTACATGGACTACACGCTGCTTACGACAAAGCGAGCTGAATTCAAAAGTGTTTTGGCCGGGCGAAGAGAGGCTACAGCAGGCTAATCTGCGTTTGCTAACAGGCTTCAGATCAGACCGATCGTTCGAAACATCAGTGTTTTATAAACGGCACAGACATGGAGTTCAACGTAAGACGGCTAGCAGCGGACGCGGGCACTTTCCTCAGTCGTGCTGTCCAgATGTCCGGATGGAGGAGTTCCTTTACGAGATGCTGGACAAAAAAGTCCCAATGCGTGCCAACAACCACGAGTTACTGGGGGAGTGCATGATCGACTCTGGCCACGAGTTTGGACCTGGAACAGCATACGGTAGTGCTCTCATTAAATGTGGGGAGACTGAGAAGCTGTTAGGCAGTGCAGAAAAAGAGTTCATTCAGAGCTCCGCCATTAATTTCCTCACTCCCTTTAGGAACTTCATCGAGGGAGATTTTAAAACCATATCGaaagaaCGCAAACTGCTTCAGAATAAGCGTCTAGATCTGGATGCTGCCAAAAACCGAATGAAGAAGGCCAGGGTGGCTGACGCTCGATCTGCAGAGCTGAACTCAAGCCCTCCGCTGGGAGAGGAGTATGTGGCTCACTTTTCTTACATGCTCGGCTTCTTGCATGTCAGGTGGCTAAAGCTGTGGGCTGAGGAGGTAAAGCAGGCAGAGACGGAACTGAGGATAGCACAGAGTGAGTTTGACCGGCAGGCTGAGATCACCAGACTTCTGCTGGAGGGCATCAGCAGCACTCATGCTCATCACTTGCGCTGTCTGAATGACTTTGTGGACGCCCAAGCCTCATATTACGCCCAGTGCTACCAGTACATGGTCAATCTTCAGAAACAGCTGGGAAGCTTTCCATCTACGTTCTCTAACAACAATCAGCCGTCCGGCGGCTCCTCCGCCAGCATCTCTGTTCCCACGGCACAGCCGGCCGCCTCACTGCCCGCCCCGCCGCCCAGCCAGACGTCACCCGCGCTCAACGAGCTCCGCAGCACCTCAGGCACCCGCAAGGCCCGTGTGCTCTACGACTACGACGCCGCCAGCAGCAGCGAGCTCTCTCTACTCGCCGACGAGGTGATCACGGTGAGCAGCGTGCCAGGCATggactctgattggctgatgggGCAAAGGGGGAATCAGAAAGGCAAAGTGCCAATTACCTACTTGGAGCTGCTCAATTAAGGTCAGCGAGaagtacaacaaaaacaaattcacattGTAGATGTGATTTGACAAGAGTAACACTCCAGATGTGATCCGAGAGTTTAATGTAGCGCAAAGCAATATAAAAGTCTTCTACACTGCCATGTCCTGTTGTGTGAACGTCTCCTCTGCCATGCGAGGGTGTCATAGTAGCCTTACAGTAAAGAAAAGCAGGCTGAGATTGCCAACTATTCATCAGTTACGTGCCaacggatttttttttttttactgctaaaCTAATTGATTGTGCTATACTGTGCTATGATGctctaataaatattatatgaaccTGG

Function

symbol description
sh3glb1b Predicted to act upstream of or within apoptotic process. Predicted to be located in Golgi membrane and mitochondrial outer membrane. Orthologous to human SH3GLB1 (SH3 domain containing GRB2 like, endophilin B1).

NR:

description
PREDICTED: endophilin-B1-like isoform X1

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K11248 SH3GLB1; endophilin-B1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043216764.1 True 1809 mRNA 0.50 11 8879439 8886276
XM_043216773.1 False 1694 mRNA 0.50 9 8879439 8886272
XM_043216781.1 False 1668 mRNA 0.50 10 8879439 8886277

Neighbor

gene id symbol gene type direction distance location
LOC122326319 ctdsplb,LOC107722544,LOC107688434,LOC107589830,LOC107585460,LOC107689397,LOC108435491,LOC108280637 coding downstream 71973 8795293 ~ 8807466 (-)
zgc:110269 zgc:110269,LOC107710602,LOC107732936,LOC107553249,LOC107569743,LOC107677938 coding downstream 249140 8626930 ~ 8630299 (-)
agfg1b agfg1b,LOC107710618,LOC107700562,LOC107732949,LOC107553264,LOC107569746 coding downstream 253167 8618514 ~ 8626272 (-)
fbxo36b fbxo36b,LOC107732939,LOC107677930,LOC107756629,LOC107710601,LOC107700517,LOC107553248 coding downstream 262450 8615122 ~ 8616989 (-)
LOC122355259 LOC107710588,LOC107700494,LOC107677894,LOC107553242,LOC107569741,LOC107569740,LOC107756607,LOC107563288 coding downstream 264612 8613547 ~ 8614827 (-)
selenoj selj,LOC107569742,LOC107700519,LOC103360296,LOC104956575 coding upstream 391 8886668 ~ 8889940 (-)
LOC122356610 LOC107553251,LOC107594670,LOC107710624,LOC107732954,LOC107700569,LOC559501,LOC108413460,LOC107677956 coding upstream 58131 8944408 ~ 9001261 (-)
amy2a amy2a,LOC107700520,LOC103353956 coding upstream 169446 9055723 ~ 9059102 (-)
arhgap29b arhgap29,LOC107745695,LOC107564532,LOC107680050 coding upstream 326182 9212459 ~ 9238949 (-)
f3b f3,LOC107730491,LOC107564531,LOC107680051 coding upstream 362323 9248600 ~ 9250969 (-)
G10400 NA non-coding downstream 80453 8798582 ~ 8798986 (-)
G10389 NA non-coding downstream 124294 8754849 ~ 8755145 (-)
G10345 NA non-coding downstream 248833 8630406 ~ 8630606 (-)
G10194 NA non-coding downstream 809086 8070154 ~ 8070353 (-)
G10185 NA non-coding downstream 944814 7934401 ~ 7934625 (-)
G10432 NA non-coding upstream 43213 8929490 ~ 8930083 (-)
G10438 NA non-coding upstream 56822 8943099 ~ 8943593 (-)
G10518 ptbp2,ptbp2b,LOC107570490,LOC107594658 non-coding upstream 441525 9327802 ~ 9331243 (-)
G10569 NA non-coding upstream 564283 9450560 ~ 9450926 (-)
G10562 NA non-coding upstream 570886 9457163 ~ 9461084 (-)
zfyve9a LOC107700554,LOC107563295,LOC107677579,LOC107553256,LOC107732202 other downstream 451535 8403327 ~ 8427904 (-)
G10213 NA other downstream 771651 8106856 ~ 8107788 (-)
G10196 NA other downstream 807605 8070776 ~ 8071834 (-)
G10178 NA other downstream 1094285 7784468 ~ 7785154 (-)
G10170 kdm4ab,LOC107564389,LOC107700543,LOC107551714,LOC107684932,LOC107743373 other downstream 1385595 7492206 ~ 7493844 (-)
abca4b abca4,abca4b,LOC107564534,LOC107680047,LOC107745690 other upstream 295779 9182056 ~ 9210041 (-)
plppr5a plppr5,plppr5a,LOC107722655,LOC107693754,LOC107677753,LOC107589876,LOC108441579,LOC107718169 other upstream 605286 9491563 ~ 9519781 (-)
si:ch211-267e7.3 si:ch211-267e7.3,LOC107722581,LOC107594654,LOC107718186,LOC107589917,LOC107677774,LOC107693699 other upstream 720046 9606323 ~ 9618473 (-)
hfm1 hfm1,LOC107722645,LOC107586144 other upstream 1193905 10080182 ~ 10095857 (-)
pkn2a pkn2,LOC107693716,LOC107585639,LOC107722607,LOC107718113,LOC107691687 other upstream 1233696 10119973 ~ 10139585 (-)

Expression


Co-expression Network