selenoj (selj,LOC107569742,LOC107700519,LOC103360296,LOC104956575)


Basic Information

Item Value
gene id selenoj
gene name selj,LOC107569742,LOC107700519,LOC103360296,LOC104956575
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 8886668 ~ 8889940 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043216792.1
GCTTAATTCCATCCAATCAGCAGCACAGAAAACGCGGTTCCATGACACAAGCGCTTTCACGTTGTGTACCTTGTCAACTTCAGACTCCGCTTGAAGAATATAAGGTTTCAAGATGGCTCTGGCCCTGGCTGACAGGGCTGTCGGAGCAATCATTGGATCGGCTGTCGCCGATGCTGCAGCGCAACCGCTCCACTGGGTCTATGACCTGCAGAAGCTGAGTGTGTTGCTCTCTCAAAGTCCTGAGCCTGAGTTCCGCTCTGAGTCCGCAAACCCATTCTACAGGAGGAACACCGGACAGCAGAGCTGCTACGGAGATCAAGCATTCGTCCTCCTGGAGTCCCTGTCTGAGTGCGAAGGTCTGAATGTGAAAGATTTGATGCAGCGCACCTACAAATTCTTCGGGCCTGGATCTGAATACGACACGCCAGTCAATGATCCCTACAGAGAAAAGGGAGCTCCAAGGCCCCAGCTACCTATCGAAGGACCCTGGAGACAGGCAAGCCTTAAGAGCTTTGTTAAAAATGTGGATGCAGGCAAGCCAGAGACAGGTTGTGAAACTGACAGTCAAATAGATGGAGTGGCAAAGCTGGCTCCCGTTGTAGCATGCTATGCCGGAAAACCGGAGATGCTGGAGAGAATTGAGGAAGCCGTCCGTGTCACGCAAAACAATGACATATGTGTGGCAGTAACTCTCGCTGCTGCTAGgtTCTTGGAGCATTTCATCCTGAATGGTCCCGATCCCAAGGCCTTGGATGCAGTGCTGAAACAGCTCAGCGACCCAGACAGAAAAAACCCTCAGGAGTTGGACGGCGCTATAATAGGACACATTCATCAAGTGAAGGACAATTTAAGCAAGAAACCGAAAGATCTCATCCCCACTGTGTTTCCAAATACTTGAGGTTTGCCGGGTGCATTCCAGGCAGCGCTGCATGGGGTTCTGACAGCCAGCGGCTATGAACAGGCTATTCGGGACACTATGAGCTGTGGTGGATGCACCTGTAGCAGGAGCTCCTTCATCGGTGCCTGCATCGGCGCTCAGGTTGGACTCGAAGGAATCCCTAGTTCCTGGAAAAGCAAGACTTTGCGTTACAACGCTTTGTTGGATCTCGCAAAGAAAGTTGTTACTCTCCGATAGCTTTGAACTTTTGAGTACGCAAAGTAAATACATAATCACTCAAGTTCTATAGATCCTCTTTCATGGCTGTTGTGATTTTGATGAGACAATTGATGAACGTTTTagcttgaaatattttaaagctaaaacTTGATAGCCTTGTTTTATTCAATTGCAACATGACATACAGAAAGTgacatgcatttttgcattaaatctatgttaaatgaa

Function

NR:

description
PREDICTED: crystallin J1C-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043216792.1 True 1345 mRNA 0.48 10 8886668 8889940

Neighbor

gene id symbol gene type direction distance location
sh3glb1b sh3glb1b,LOC107700566,LOC107710622,LOC107578300,LOC107677816,LOC107732941,LOC107553268 coding downstream 391 8879439 ~ 8886277 (-)
LOC122326319 ctdsplb,LOC107722544,LOC107688434,LOC107589830,LOC107585460,LOC107689397,LOC108435491,LOC108280637 coding downstream 79202 8795293 ~ 8807466 (-)
zgc:110269 zgc:110269,LOC107710602,LOC107732936,LOC107553249,LOC107569743,LOC107677938 coding downstream 256369 8626930 ~ 8630299 (-)
agfg1b agfg1b,LOC107710618,LOC107700562,LOC107732949,LOC107553264,LOC107569746 coding downstream 260396 8618514 ~ 8626272 (-)
fbxo36b fbxo36b,LOC107732939,LOC107677930,LOC107756629,LOC107710601,LOC107700517,LOC107553248 coding downstream 269679 8615122 ~ 8616989 (-)
LOC122356610 LOC107553251,LOC107594670,LOC107710624,LOC107732954,LOC107700569,LOC559501,LOC108413460,LOC107677956 coding upstream 54468 8944408 ~ 9001261 (-)
amy2a amy2a,LOC107700520,LOC103353956 coding upstream 165783 9055723 ~ 9059102 (-)
arhgap29b arhgap29,LOC107745695,LOC107564532,LOC107680050 coding upstream 322519 9212459 ~ 9238949 (-)
f3b f3,LOC107730491,LOC107564531,LOC107680051 coding upstream 358660 9248600 ~ 9250969 (-)
cnn3b cnn3b,cnn3,LOC107680046,LOC107730489,LOC107570492 coding upstream 373254 9263194 ~ 9271097 (-)
G10400 NA non-coding downstream 87682 8798582 ~ 8798986 (-)
G10389 NA non-coding downstream 131523 8754849 ~ 8755145 (-)
G10345 NA non-coding downstream 256062 8630406 ~ 8630606 (-)
G10194 NA non-coding downstream 816315 8070154 ~ 8070353 (-)
G10185 NA non-coding downstream 952043 7934401 ~ 7934625 (-)
G10432 NA non-coding upstream 39550 8929490 ~ 8930083 (-)
G10438 NA non-coding upstream 53159 8943099 ~ 8943593 (-)
G10518 ptbp2,ptbp2b,LOC107570490,LOC107594658 non-coding upstream 437862 9327802 ~ 9331243 (-)
G10569 NA non-coding upstream 560620 9450560 ~ 9450926 (-)
G10562 NA non-coding upstream 567223 9457163 ~ 9461084 (-)
zfyve9a LOC107700554,LOC107563295,LOC107677579,LOC107553256,LOC107732202 other downstream 458764 8403327 ~ 8427904 (-)
G10213 NA other downstream 778880 8106856 ~ 8107788 (-)
G10196 NA other downstream 814834 8070776 ~ 8071834 (-)
G10178 NA other downstream 1101514 7784468 ~ 7785154 (-)
G10170 kdm4ab,LOC107564389,LOC107700543,LOC107551714,LOC107684932,LOC107743373 other downstream 1392824 7492206 ~ 7493844 (-)
abca4b abca4,abca4b,LOC107564534,LOC107680047,LOC107745690 other upstream 292116 9182056 ~ 9210041 (-)
plppr5a plppr5,plppr5a,LOC107722655,LOC107693754,LOC107677753,LOC107589876,LOC108441579,LOC107718169 other upstream 601623 9491563 ~ 9519781 (-)
si:ch211-267e7.3 si:ch211-267e7.3,LOC107722581,LOC107594654,LOC107718186,LOC107589917,LOC107677774,LOC107693699 other upstream 716383 9606323 ~ 9618473 (-)
hfm1 hfm1,LOC107722645,LOC107586144 other upstream 1190242 10080182 ~ 10095857 (-)
pkn2a pkn2,LOC107693716,LOC107585639,LOC107722607,LOC107718113,LOC107691687 other upstream 1230033 10119973 ~ 10139585 (-)

Expression


Co-expression Network