rdh10b (rdh10b,LOC107584387,LOC107751355,LOC107686027,LOC107732566)


Basic Information

Item Value
gene id rdh10b
gene name rdh10b,LOC107584387,LOC107751355,LOC107686027,LOC107732566
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 14139477 ~ 14141857 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043216912.1
ACAAACACGCGTGGAAAGTTATGAAGGCAAGTTAGTTCGATCATATTTAAAGAGCTGGCGAGTCACGAAAATACACTGTAATGGGTAATACTCCTGTCGTGAGGGAATCCAGATTTTATGCAAGCATCGACAGGGTGTTTCTTTGAGCACGTTTGcggtttaatttctttctttgctgTTGGAGCTGAACGTCGCCGTAATTAGTTTAGTTCGGGGAGTGGAAACGCTGAGGCACGCGTACATTATGAATTTCGTAACAGAATTATTCGTGGTTACTTTTAAAATCTTATGGTCGTTCGTACTGGCCGGTGCTAAATGGCTTATTCCTCCGCGGGAAAAGAGCGTGGAGGGCCAAGTGTGTGTTATCACCGGTGCTGGAAGCGGTCTCGGGCGACTCTTTGCGCAGGAGTTTGCCCGGAGACGAGCAACCCTTGTGCTGTGGGATGTCAACCGAGAGAGCAACGAAGAGACCGCAGAGATGGTGCGTGAGATCTACCGAGAAATCAAGCCGTGCGCTGGCAGTGTTCAGGAGTTGCCTGTGTTCCAGCCGAAAGTTTACACGTATGTTTGCGACGTCAGTAAACGCGAGAGAGTGTACTCGACCGCAGAGAAGGTGCGCAAAGAAGTGGGGAACATCGACCTGTTGATCAACAACGCTGGAGTTGTGTCAGGGCGTCATCTTCTCGAGTGCCCTGATGAGCTTATTGAGAGGACCATGATGGTCAACTGCCATGCTCACTTCTGGACTGCAAAGGCTTTTCTTCCCAAGATGCTTGAGCTGAATCATGGACACATTGTAACTGTAGCTAGCTCACTGGGCTTGTTCACCACTGCTGGTGTAGAGGACTATTGTGCAAGCAAGTTTGGAGCCATAGGCTTTCATGAGTCTTTGAGCCATGAACTGAAAGCAGCTGATAAGGATGGAATAAAGATGACGCTTGTCTGTCCTTTTTTAGTTGACACTGGCATGTTCAACGGCTGCAAAATTAGGAAAGAAATGGCGCCATTGTTTCCACCGCTAAAACCAGAGTACTGTGTCAAACAGGCCATGAGAGCCATACTAACAGACCAACCAATGATCTGCACGCCAAGAGTCATGTACATGGTCACCTTCATGAAAACtgttttgcCGTTTGATGCCATCGTGTGCATGTATAGATTTATCGGGGCTGATAAATGCATGTACCCCTTTCTGGCTCAACGGAAGGAGTCCACCAACAACAATGAATCAAAGACTGGAATCTAACTGGTTCTGAATGAGCAATGCTGCTAACTGTTTAGTTCCTCTGGAACGCTGAAAGCcgtatgttgttgttgttttttggattttttttttttgacactttGCTGTCAGCTTTGAGTTTGCAATAAATGCCAATGTAGAACACTATGTAGCGATTGGCTTAAATTATGAAATGCTGTGTTACTGTAAGGTTGCTCAAGGTCTGTCATCTGTATATGTATTCACATTTTGTCAAGTATTGTTGCTTTTTCTTCTCAGCATTCCATGACTTTGTCACTTTAGAGGTTTTATCCTCCTAATAACACTATGAAATGCACTATGTAATGAAAGTATTTCTCTTGTTGCCTTTGTGGTCATGTGTTGGTGACTTGGGAAAACCCCAATGATTAAAGCAAAAAGATGAGCAGAAATTGCCACAGGTGCTTCTTGTTGAATAAACCGTCTTTAAACAA

Function

symbol description
rdh10b Predicted to enable oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor. Predicted to be involved in retinol metabolic process. Predicted to act upstream of or within retinoic acid biosynthetic process. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be active in lipid droplet. Is expressed in several structures, including axis; notochord; pleuroperitoneal region; tail bud; and yolk syncytial layer. Orthologous to human RDH10 (retinol dehydrogenase 10).

NR:

description
PREDICTED: retinol dehydrogenase 10-B isoform X2

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0052650 NADP-retinol dehydrogenase activity molecular_function

KEGG:

id description
K11151 RDH10; retinol dehydrogenase 10

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043216912.1 True 1695 mRNA 0.45 6 14139477 14141857

Neighbor

gene id symbol gene type direction distance location
kcnb2a kcnb2,LOC107584379,LOC107751354,LOC107686026,LOC107664054,LOC107550713,LOC108435719 coding upstream 3466 14117486 ~ 14136011 (+)
dnajb6a LOC107732567,LOC107584409,LOC107686029,LOC107751357 coding upstream 33972 14099350 ~ 14105505 (+)
rbm33b LOC107686025,LOC107751368,LOC107585941 coding upstream 64034 14051753 ~ 14075443 (+)
en2b eng2b,LOC107664096,LOC107751371,LOC107686076,LOC107586406,LOC107550717,LOC107732562 coding upstream 100303 14035516 ~ 14039174 (+)
htr5aa htr5aa,LOC107550720,LOC107732551,LOC107664052,LOC107686075,LOC107586412,LOC107751372,LOC103047601 coding upstream 123582 14009083 ~ 14015895 (+)
tmem70 NA coding downstream 10209 14152066 ~ 14153672 (+)
pi15b pi15b,pi15,LOC107746926,LOC107686080,LOC107732565,LOC107550701,LOC107664030,LOC108435710,LOC107586375 coding downstream 48612 14190469 ~ 14194710 (+)
crispld1b crispld1b,LOC107732556,LOC107746925,LOC107664039,LOC107686081,LOC107550700 coding downstream 53702 14195559 ~ 14203218 (+)
socs6b LOC107746913,LOC107584321,LOC107686035,LOC107664088,LOC107732589,LOC107550707 coding downstream 72637 14214494 ~ 14218551 (+)
LOC122355826 LOC107746923,LOC107732576,LOC107550699,LOC107686037,LOC107664020 coding downstream 91962 14233819 ~ 14241872 (+)
LOC122357607 NA non-coding upstream 40630 14091564 ~ 14098847 (+)
G11820 NA non-coding upstream 71382 14002545 ~ 14068095 (+)
G11836 NA non-coding upstream 87857 14048717 ~ 14051620 (+)
G11823 NA non-coding upstream 144104 13994791 ~ 13995373 (+)
G11812 NA non-coding upstream 222286 13904568 ~ 13917191 (+)
G11894 NA non-coding downstream 227831 14369688 ~ 14371834 (+)
G11895 rgs20,LOC107584260,LOC107746905 non-coding downstream 230061 14371918 ~ 14375750 (+)
G11898 LOC106524523,LOC107383785 non-coding downstream 247128 14388985 ~ 14437409 (+)
LOC122355240 NA non-coding downstream 353593 14495450 ~ 14497873 (+)
G11914 NA non-coding downstream 418003 14559860 ~ 14603545 (+)
rnf152 rnf152,LOC107729101,LOC107679332,LOC107567413,LOC107674343,LOC107714840,LOC107584540 other upstream 1265469 12867929 ~ 12874008 (+)
LOC122358236 NA other upstream 1513090 12623823 ~ 12626387 (+)
pld1a pld1a,LOC107688495,LOC107550602,LOC107680234,LOC107722545,LOC108442335 other upstream 2201887 11908073 ~ 11937590 (+)
mast3a LOC107722547,LOC107688474,LOC107680242,LOC107550619,LOC107709878,LOC107586070 other upstream 2631773 11482104 ~ 11507704 (+)
rps28 NA other upstream 2694906 11422090 ~ 11444571 (+)
G11854 jph1b,jph1,LOC107584332,LOC107550709,LOC107746914,LOC107732545,LOC107664083,LOC107686034,LOC107740042 other downstream 33507 14175364 ~ 14179615 (+)
plxdc2a LOC107686089,LOC107713976,LOC107751571 other downstream 604250 14746107 ~ 14753161 (+)
ackr4a LOC107664061,LOC107751559,LOC107556724,LOC107751558,LOC107751560,LOC107713978,LOC107586293 other downstream 634465 14776322 ~ 14782977 (+)
LOC122357435 LOC107733881,LOC107599885,LOC107657419 other downstream 1099940 15241797 ~ 15249249 (+)
dars2 dars2,LOC107720851,LOC107700987,LOC107558296,LOC107599907 other downstream 1718322 15860179 ~ 15875764 (+)

Expression


Co-expression Network