vav3b (vav3b,LOC107700567,LOC107732951,LOC107677852,LOC107553269)


Basic Information

Item Value
gene id vav3b
gene name vav3b,LOC107700567,LOC107732951,LOC107677852,LOC107553269
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 8890773 ~ 8929310 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043217443.1
AATTCGTAACTCCCTTGACGGGCGTTTATAGTTTGTAGACCGCGGATAAACCCAAATTAGTGCGCACAAGTCTCAGTTTTGGCAAATAAGAGCGCAAGCTCAAAAAGAAAgcgaaaaagaagaagaagaagaaaaaaaaaaaaacacggatGCCAAATGTAACGCAAGGTGTACGCTCCGCTTCAGCATTTTAGCTTCATTCAACTGTGTCAGATTAATTTTACAGTTGTTGGCTTTATCTGTGTACGCGCATTATGGAGTACTGGAGGCAGTGCAGCTTGTGGCTCATCAATTGTAAAGTTTTGCCCCGGAATCATCGGGTCACGGCGGATTCGGCGCAGGTTTTTGATTTGGCCCAAACTCTTCGGGATGGGGTGCTTCTGTGCCAGCTGCTGAACAATCTCAGACCCGACACCATTAACCTAAAAGAGATCAATCTCAGACCACAGATGTCACAGttcctTTGCCTGAAGAATATTCGTACATTCTTGTCTGCGTGTTGTGAATCATTTGGGATGAAGAAGAGCGAACTGTAAGCCTTCGATCTCTTCGACGTCCGAGATTTTGGAAAGGTCATTGACACCCTATCAAAGCTCTCTCATATGCCTTTTGCACAACAGAAAGGAATCAAGCCATTTCCCACAGAGGAAAGCACTGAAAATGAAGACATATATATCCATTTGGCTGATCTTATTGACGAGGAACTGGAGGAAGATGTTTATGACCCTGTGTATGGAGATGTGGAGGGAGGAGAGGTCTATGAGGATCTGATGAGGACAGAGGCTGCTGCGTCTAAAGCGAAACAGGCCGAGGTGGATATCAGAAGCTGCTGTCTTCTAGAGATCAAACAGACAGAAGCCAAATACACTGAGACCCTGGAGACCATTGAGAAGTACTTTATGATTCCACTGATAAAGTTCATCTCGGCAACAGAAATTGACAAGATTTTCATCAATATACCAGACCTGGTTAAAGTGCACAAAAGCCTGTTGGCTGAGATTCAAGActctgttcaaaataaaaacgcaGAAAACCTTCACCAGATCTTCATTATTTACAAAGACAGGCTTCTGCTTTATGGAAAATACTGCAGTCACGTAGAATCAGCCATTTCTCTGCTAGACTTCATCTGTAAGGAAAAAGAGGGCGTCCGACTGAAACTAGAGGAATGTTCAAAGAGAGCCAACAATGGGAAATTCACTTTGAGAGACTTGCTTGTGGTTCCCATGCAGCGCGTGCTGAAGTACCCGCTACTGCTTCAGgaATTGCTTAAATATACCAGTGATGACACAGAAAAGAGCAAACTACGATTAGCCCTTGATGCCATGAGAGACTTAGCCCAGTATGTAAATGAGGTGAAAAGAGACGTTGAGACTCTGAGGGAGATCGATCAGTATCAGAGATCCATTGAGAATTTGAACCAGTGCTTACTTTCTTATGGAAGACCGAAGGGTGACGGTGAAGTCCGTTTGGTGTCGAATGTGGACAAACGCAGGCAGGACAGacatatttttttgttcgaCGTCGCTGTGATTGTTTGCAAGAGGCGCGGGGACAACTATGAGATGAAGGACGTGATCGACCTCAACCATTTCAAGATCTCTAATAACCCCACTACTGATAAGGACTGCAGAAAGTGGTGCTACGGGTTCTACCTCACTCACCAGCAGGGGCAGAGTGGATTTGAGTTCCTGTTCAAGACAAAAGAGCTGAAGAAGAAATGGCTGGACCAGTTCGAGATGGCCATATCTAATATTCGGCCTGAGAATGCCACTTTTAACTCTCACCACTTCAGGATGCACACTTTCGAGAGGGCTACCAGCTGCAGCTCCTGTCATATGCTTCTCCGGGGAATTTTTAACCAAGGCTACCTTTGTCCTAAATGCGGAAACGGGGCTCATAAGGGTTGTCTTGGAAAACTAGGAGCCTGCGGAAGGGCAGGTGCTGCTGTCCAAAAACCAGAGagaaagacaacacCTAGGAAACAAGAAGACCAAGgtTTGCCAAAAATGCTTGTCATCAGAGGCTATTTTGGGGTTCGCAGTCCTCCGGGCAGACCGCCGCTCAATGCTCAGATTGGTGATGTCATAGAGGTCATCTATGCCGATCCTCACAGCTCCTGGTGGGAGGGCAAAATACTGACAACGCAAGAGACTGGCTTCTTTCCAAGTGATGCAGTCAAACCCTGCCCATGTGTACCAAGGACAGTCGACTATTCAGCTCAGCCCTGGTTTGCCGGGCCCATGGAGAGGCACCACGCAGAGTCTGAGCTtgtggagagagagaacagcACCTACCTGGTGCGATACAGGAGCAGGGAGAGCAGAGAGTATGCTATCAGCATCAAGTACAACAATGATGTAAAGCACATTAAAATCCTCACCAAGGAGGGCAGCTTCTACATTGCTGAAAGCAGGACGTTCAAGACTGTTTTAggACTGGTTGAGTATTATAAACAGCACTCTCTGAAAGAGGGTTTTCGTACTCTGGACACTACTTTGCAGGTGCCCTATAAAGAGCTTGGTAGTGGAGTCACACCTGCTGCTCCAGTGCTGTGTGGGCTTTCCGTTTTGAGTCCCACCAGCTACAGTTTTGTTCCTCCCTCCCCCTCACCCTTCTGGTCAGTTTTGACCCCGAGAGTGCTTGGCATTGCACTGGCACGATACGATTTCAGCTCCAGAGATACAAGGGAACTCTCTCTGCAGGTGGGCGACCTGGTGAAGATCTATATCAAGTGTGCCAGTGGATGGTGGAAAGGTGAAGTCAATGGCCAGGTGGGATGGTTCCCTTCAACTTATGTCGAGGAAGAGGAGTGATCAACGCAGGACGTTATCCTCTCTGTGATGCGACAGTGATTGGACAAGGAACGAAATGGCGACCGATGCGCCCTTATTTGAGCAAGGCACCACAAACACAGCAATTATCAGCCTCTTCTAATGGGATCCGGCAGTCTGCGGTTGAGACCTGCAGCGTGATGCATCCGAGGCCGTGTCGGCTTTGACTGTTTAATTAGTTATGAATGTCCCTCGCTGCTCCACATTCAGTCCAGacatctctttctctcactcttttcCTCCCTCTCACCCTGTCACCTCCTGAAATCTTCACACAGGGCCTGGGGCCCCCCTCTCTCTGcctgtttaaaatttaaactcCATTTCTGTGCCGTGCTGGACCTCCCATAAACTCAGGAGTGGCACGCAGGGAGAAAAGCCCTGAGCTGGCCGTTTTTTCCCTCCACCCGGCGACCTTTACGCGGTGCTTTCAGCTCACCTTGTGCTATAATTGATGATTTCATTCGCCCGTCTGACTCGGCAAAGTTTGGCTGGGGCCAGACGGAGAGCTGTGCTGTCACAAAGCCTTCCTCCTTGCCTCCTCCTCTTCAGCCCTGATAACACTTAGCGGCGCCGCTCTCTCAGGGCGCTCGGAGCGCTGCGCGGTGACAGGAGGCCTGCCGTTCAGTGCGATATCCATCTTAGCCGGCCTAACGCTCTGCTCTGTGATCAGTCATCGCTCTGTCTGTTTCTGAACCTCGGGTGATCCCAAGCAGAATGTTGGCACTGATTTTGGACTGAAGTCAATTTCTTCTCTTGTCATGCAACGGAACGAGTTGTTAATGCTGTGGTGTTTGGGGCACTAAGGCTCCTAGATACTgcgaaaaaaaatatttggccTGTTACAAAAAATCTGCtaggaaaaatacaaaatgcaataccgttcaaaagtttgacgCCAGTACGATTatattaagtaataaataagttttttaaTCAGGGACaccaataaatgctgttttattgaactttattttcatgtaagaatcctgaaaaaaatttattatagtttacacaaaattcttaatgttttcagtattgataataattagaaattttACAAATCCACGTAATAATTTATGAAGGATCGCACGATGCTGAAAACAAATaactttgtcatcacaggaatgaatcaCATTTgtcagagatatatatatatatatatatatatatatatat

Function

symbol description
vav3b Predicted to enable guanyl-nucleotide exchange factor activity and metal ion binding activity. Predicted to act upstream of or within intracellular signal transduction. Orthologous to human VAV3 (vav guanine nucleotide exchange factor 3).

NR:

description
PREDICTED: guanine nucleotide exchange factor VAV3-like

GO:

id name namespace
GO:0035023 regulation of Rho protein signal transduction biological_process
GO:0046872 metal ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043217443.1 True 4013 mRNA 0.46 29 8890773 8929310

Neighbor

gene id symbol gene type direction distance location
LOC122359011 arhgef4,LOC107700563,LOC107710620,LOC107553266,LOC107732940 coding upstream 12673 8848327 ~ 8878100 (+)
LOC122361595 LOC107710620 coding upstream 49039 8830820 ~ 8841734 (+)
amer3 LOC107710619,LOC107700565,LOC107677756,LOC107732953,LOC107553265,LOC107569737 coding upstream 228450 8651917 ~ 8662323 (+)
atr atr,LOC107677746,LOC107700496 coding upstream 239227 8630412 ~ 8651546 (+)
atp1b3a atp1b3a,LOC107700561,LOC107563307,LOC107710617,LOC107732952,LOC107677716,LOC107553263 coding upstream 291178 8590241 ~ 8599595 (+)
col11a1b col11a1b,LOC107680048,LOC107594685,LOC107710593,LOC107564536,LOC107700498,LOC107745694 coding downstream 158384 9087694 ~ 9154434 (+)
tecrl2b tecrl2b,LOC107564537,LOC107745691 coding downstream 244543 9173853 ~ 9180307 (+)
abcd3b abcd3b,abcd3,LOC107564533,LOC107730494,LOC107680052,LOC106590647 coding downstream 310322 9239632 ~ 9248291 (+)
si:dkey-10f21.4 tmem56,si:dkey-10f21.4,LOC107710631,LOC107730492,LOC107570488 coding downstream 326075 9255385 ~ 9277476 (+)
LOC122324815 hccsa.1,LOC107594665,LOC107710606,LOC107700523 coding downstream 348453 9277763 ~ 9281294 (+)
G10374 NA non-coding upstream 10320 8879942 ~ 8880453 (+)
G10371 NA non-coding upstream 91777 8798591 ~ 8798996 (+)
LOC122356731 NA non-coding upstream 125322 8762839 ~ 8765451 (+)
G10284 LOC107710615 non-coding upstream 301699 8587377 ~ 8589074 (+)
G10271 NA non-coding upstream 329260 8560098 ~ 8561513 (+)
G10431 NA non-coding downstream 194 8929504 ~ 8930073 (+)
G10433 NA non-coding downstream 10659 8939969 ~ 8941186 (+)
G10445 NA non-coding downstream 126413 9055723 ~ 9056245 (+)
G10446 amy2a,LOC107700520,LOC107594668,LOC105896008 non-coding downstream 127780 9057090 ~ 9057859 (+)
G10466 NA non-coding downstream 286195 9215505 ~ 9216664 (+)
G10212 NA other upstream 782996 8106865 ~ 8107777 (+)
G10108 NA other upstream 1308388 7504622 ~ 7582385 (+)
gng12a gng12a,LOC107700509,LOC107716954,LOC107551713 other upstream 1590672 7285670 ~ 7300101 (+)
lrrc53 LOC107700485,LOC107588905,LOC107716924 other upstream 1784981 7098303 ~ 7105792 (+)
G9925 LOC107563058,LOC107549254 other upstream 1903654 6986298 ~ 6987119 (+)
olfm3b olfm3b,LOC107700521,LOC107710604,LOC107745696,LOC107680049 other downstream 233301 9162611 ~ 9171915 (+)
arpc5a arpc5a,arpc5,LOC107722639,LOC107693740,LOC107564704,LOC107677751,LOC107718183 other downstream 817260 9746570 ~ 9751212 (+)
znf414 LOC107722538,LOC107564712,LOC107693731,LOC107691619,LOC107718126 other downstream 982318 9911628 ~ 9916861 (+)
selenof selenof,sep15,LOC107693704,LOC106598901 other downstream 1229222 10158532 ~ 10161809 (+)
lyrm4 lyrm4,LOC107718092,LOC107688446,LOC107722638,LOC107689406,LOC107688520 other downstream 1733419 10662729 ~ 10665110 (+)

Expression


Co-expression Network