klhl20 (klhl20,LOC106569069)


Basic Information

Item Value
gene id klhl20
gene name klhl20,LOC106569069
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 15849084 ~ 15856755 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043217539.1
AggaaactaatataaaaaattaaaaataaaagttgacgGTGTCCCGTAAACCCAGCGGTTGTCTTGATATTATCTGGCTAAATCTCGACGACTTAAAATTCAATCTGGACCGATTTAATGGACAAATAAGGGGTACCAGTGCACGCCCGGATACCACAGGAATGGATATCACAAGTCGCTGCACCCTTGGTGACCCCAACAAGCTCCCAGAGGGAGTTCCTCAGCCTGCCAGGATGCCCTACATCTCAGACAAGCACCCTCGGCAGACCCTGGAGGTCATCAACCTGCTCCGCAAGCACCGAGAGCTGTGCGACGTGGTTTTGGTGGTGGGAGCCAAGAAGATTTATGCACACCGTGTGATCTTGTCCGCCTGCAGCCCCTATTTCAGAGCCATGTTCACGGGGGAACTGGCAGAGAGCCGACAGACAGAAGTTGTGATCCGTGATATTGATGAACGAGCCATGGAGCTGCTCATCGACTTCGCTTATACCTCGCAGGTGACTGTGGAGGAGGGAAATGTGCAGACTCTGCTGCCTGCTGCCTGCTTGTTGCAACTGGCCGAGATTCAGGAAGCTTGCTGTGAATTCCTGAAGCGGCAATTGGACCCCTCGAACTGCTTAGGCATCAGGGCCTTCGCCGACACTCACTCCTGCAGAGAGCTGCTGCGTATCGCTGATAAGTTCACCCAGCATAACTTTCAGGAGGTGATGGAGAGTGAAGAGTTCATGCTGCTGCCAGCCAACCAGCTGATAGACATCATCTCCAGTGATGAGCTCAATGTTCGAAGTGAGGAACAGGTGTTTAACGCTGTAATGGCCTGGGTTAAATACAGCATCCAGGAGCGCAGGCCTCAGCTGCCGCAGGTTCTGCAACATGTGCGTCTTCCCCTTTTGAGCCCCAAGTTTCTGGTTGGGACGGTGGGTTCAGATCCTCTGATCAAGAGCGATGAGGAGTGTAGAGACTTGGTTGATGAAGCCAAAAACTACCTCCTGCTACCCCAAGAGCGCCCCCTGATGCAAGGACCTCGAACCCGGCCCAGAAAGCCAATCCGATGTGGAGAAGTACTGTTTGCTGTGGGAGGTTGGTGCAGTGGTGACGCTATCTCAAGCGTTGAGCGCTACGACCCTCAGACCAATGAGTGGAGGATGGTGGCGTCCATGAGCAAACGCCGCTGTGGAGTTGGTGTCAGTGTTCTGGATGATCTGTTGTATGCGGTCGGCGGACACGACGGCTCGTCTTATCTCAACAGTGTGGAGAGGTATGATCCTAAGACTAACCAGTGGAGCAGTGACGTCGCCCCTACGAGCACCTGCAGGACCAGTGTGGGTGTTGCTGTATTAGGAGGGTATCTGTATGCTGTGGGAGGTCAGGATGGTGTTTCCTGTCTCAACATTGTAGAAAGGTATGATCCGAAAGAGAATAAGTGGACCCGTGTTGCCTCGATGAGTACCAGGAGGTTGGGTGTAGCTGTAGCTGTATTAGGAGGTTTTCTTTACGCAGTAGGAGGTTCAGATGGAACATCCCCACTAAACACAGTGGAGCGGTATAACCCTCAAGAGAACCGCTGGCACACAGTGGCACCCATGGGTACCCGTCGGAAACACCTGGGCTGTGCAGTATACCAGGATATGATCTACTCTGTGGGCGGCAGAGACGACACCACGGAACTGAGCAGCGCAGAGCGGTACAATCCCAGAACCAATCAGTGGTCACCTGTAGTTGCGATGACGTCCAGAAGAAGCGGGGTGGGTTTAGCAGTAGTAAACGGCCAGTTGATGGCAGTTGGAGGATTTGACGGTACCACATACTTAAAAACTATAGAAGTCTATGATCCTGATGCCAACACATGGAGGCTCTATGGAGGAATGAACTACAGGAGGTTGGGAGGTGGCGTCggtgtaataaaaatgactcaCTGTGAATCACATATATGGTAACACCTACAGTATCCATCTCTCAGATGCCTCACCATAGCTCGTGCCTCATAGAGACATTGTACATCATgcaagaggaaaaaacaaaacaaaactgagtaTTGTCTCCAGTTACTGAGATGGCAAACGTACCATCTCCTGAAGCTGCTCTGAGGAGACTCACCTGGCCATAGAGCATCACTCCATTTCGTTTTTACATTTGGTCGTACTTGAGAATAGCCAAAGGCAATGTTTTGAAGAGAGAAGCAGCAGCCGGAAAAAGCATCAAGCCAGAGCGTATGTTTTTCTGGAAGGAACCAGCCTTCCGCCGGTCTATTTGACTGCATTGAAGAATAACTACAGTAACCTGAAACGCACGTCGCTAGGGATTGGTGTGAATGACGCTCGTTCTTGGAAGCAGATGTTTCCCTGAATAATGTTCTAGTCTGAATTGGATGCACTGTGATATCTTTACTATTTCtttaagtttaggttttaaTGAGTTCTACACTGAGCATTAACTGTTCCTCTGCATTTTACCAGATGTAAGAAGATTtgttctctcttctttctgtttctttggTGTGCTGAAAATGCAGTCCCTCCTGAAACATTGCAATCTAATGAAGGctgtaaaagaagaaaaataagttatttttgaAGCAGTCAAAAACAGGTTTGATGTATTATcaatttgtttacttttatacAACCGAATGCATCATTGAACCAGTCCATGCACTTTAATCCACTAAGAGTTTTTctattaaagtttgttttttttttttttttttttaaagattgttgGATGTATTGTTTTATGCAAGTATAAGGAcccaaggtaaaaaaaaaaaaaaaaaaaagaaaaaaaaaaaaaaaaaaagatttcataaTCTGACATTTTTAGAACAAACAGGTTTGCAGTAGTAGCCTGCACGTATGCTCAAAAAACTTAATGTATAGCTTGTTACTGAATATGAGATGAATCTCTTTGAATTGTTACAActgcccttttttttcttttttaaatcaacacttGTTTTCCCACAGGACAGTTATGTGTTCTAATCTTGGTGTTGAAATACGGTTACATAAAGTATATCTTCCATgatcttatttaattttaaagatgTACAACTGTCTATACATTTCAGATCTTTGAAAGTGGAAATAAAATATCCAAagcaaaataa

Function

symbol description
klhl20 Predicted to be involved in protein ubiquitination. Orthologous to human KLHL20 (kelch like family member 20).

NR:

description
PREDICTED: kelch-like protein 20

GO: NA

KEGG:

id description
K10457 KLHL20, KLEIP; kelch-like protein 20

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043217539.1 True 3106 mRNA 0.46 12 15849084 15856755

Neighbor

gene id symbol gene type direction distance location
kif2c kif2c,LOC107599896,LOC107657458,LOC107720856,LOC107700992,LOC107558283 coding upstream 87330 15754575 ~ 15761754 (+)
kiss1ra LOC107657423,LOC107599909,LOC107722062,LOC107700977,LOC107559038 coding upstream 143513 15694208 ~ 15705571 (+)
zgc:113531 zgc:113531,LOC107739831,LOC107599893,LOC107657421,LOC107557127,LOC107730792,LOC107700978 coding upstream 263911 15580143 ~ 15585173 (+)
slc6a9 slc6a9,LOC107739827,LOC107657455,LOC107730788,LOC107700995,LOC107557089,LOC107599892 coding upstream 284754 15521048 ~ 15564330 (+)
klf17 klf17,LOC107739832,LOC107657420,LOC107599908,LOC107730790,LOC107700996,LOC107559026 coding upstream 330108 15516806 ~ 15518976 (+)
astn1 astn1 coding downstream 175228 16031983 ~ 16224471 (+)
cop1 rfwd2,LOC107726924,LOC107678936,LOC107722073,LOC107658354 coding downstream 418315 16275070 ~ 16285558 (+)
tnr tnr,LOC107658355,LOC107726886,LOC107558359 coding downstream 468395 16325150 ~ 16443361 (+)
mrps14 LOC107722064,LOC107563590,LOC107658361,LOC107678929,LOC107559053,LOC107726917 coding downstream 639186 16495941 ~ 16497221 (+)
LOC122355504 cacybp,LOC107722060,LOC107658360,LOC107678928,LOC107726916,LOC107559063,LOC107563589 coding downstream 640954 16497709 ~ 16499702 (+)
G12451 NA non-coding upstream 37691 15810893 ~ 15811393 (+)
G12432 NA non-coding upstream 44163 15723086 ~ 15804921 (+)
LOC122356092 NA non-coding upstream 106286 15731819 ~ 15742798 (+)
G12419 NA non-coding upstream 170638 15676203 ~ 15678446 (+)
LOC122357737 NA non-coding upstream 348770 15498524 ~ 15500314 (+)
G12491 NA non-coding downstream 21379 15878134 ~ 15878404 (+)
LOC122359940 LOC107743936,LOC101883431 non-coding downstream 176002 16032757 ~ 16034908 (+)
G12530 pappa2,LOC107568983,LOC107722077,LOC107558342,LOC107658303,LOC107678935,LOC107726923 non-coding downstream 407019 16263774 ~ 16264920 (+)
G12607 NA non-coding downstream 834171 16690926 ~ 16693619 (+)
G12669 NA non-coding downstream 927145 16783900 ~ 16784544 (+)
LOC122357435 LOC107733881,LOC107599885,LOC107657419 other upstream 599835 15241797 ~ 15249249 (+)
ackr4a LOC107664061,LOC107751559,LOC107556724,LOC107751558,LOC107751560,LOC107713978,LOC107586293 other upstream 1066107 14776322 ~ 14782977 (+)
plxdc2a LOC107686089,LOC107713976,LOC107751571 other upstream 1095923 14746107 ~ 14753161 (+)
G11854 jph1b,jph1,LOC107584332,LOC107550709,LOC107746914,LOC107732545,LOC107664083,LOC107686034,LOC107740042 other upstream 1669469 14175364 ~ 14179615 (+)
rnf152 rnf152,LOC107729101,LOC107679332,LOC107567413,LOC107674343,LOC107714840,LOC107584540 other upstream 2975076 12867929 ~ 12874008 (+)
dars2 dars2,LOC107720851,LOC107700987,LOC107558296,LOC107599907 other downstream 3424 15860179 ~ 15875764 (+)
G12531 LOC107722077,LOC107568983 other downstream 410288 16267043 ~ 16268797 (+)
LOC122323293 NA other downstream 593377 16450132 ~ 16456532 (+)
LOC122361622 NA other downstream 867859 16724614 ~ 16776351 (+)
golim4b golim4b,LOC107591324,LOC107684437,LOC107706331,LOC107559125,LOC107659375,LOC107738257 other downstream 1175384 17032139 ~ 17039903 (+)

Expression


Co-expression Network