retreg1 (fam134b,LOC107751562,LOC107664066,LOC107686060,LOC107713983,LOC107584095)


Basic Information

Item Value
gene id retreg1
gene name fam134b,LOC107751562,LOC107664066,LOC107686060,LOC107713983,LOC107584095
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 14823155 ~ 14834038 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043217565.1
ACCgaccaaacaacaacaaaataaacagcagcTGGCAGCGCGCGCGAGGAGCGGGCTTTGCTATGGCTAATCAGGGTGGATGCGATAGCCCGGACGCTTCAGAGGTGGAGCCGGTGGGAAAGAGCTCCGGCGAGGCTTCCTCGAGACCACTCAgctcaggtggaggaggagagatGGCGGTGAAAGAGGAAGAGCAGCCTTCGGGAGTCCGACACCCTGCAGACACTTATCCTCTGTACCGCGTATCAAAGCTCATTAACTGGAAAAAACCGTTATGGACTTCCGCTTTCTTCGCAACTACAAATATAGCGTTTTGgtTTGTGTCCCTTAGTCCCTGTCGAACGTTCAGCCTCATCTCCATGTGTGTGGCTCTCTTAGTGATGATACAACCGATGAGAGATCTGGTTCTTTCCAGATCAAGAGGAGCCACTCTATGGAGGAGTATGACCAGCAGCTGGGAGGTCATTGATTCTGTCCAGGAGGGCAAGTCTGGATCAGGATCTCCATTCACAGACTTCTGGACGAGCCTCAAGCTCTTCATTGAGGAGACTTCCTCTTTTAAGCAGCAGAATCCAGGCAAGTTCTGTCTGCTGGTCTGCAGTATGTGTACTTTTCTGGCAATACTTGGACGTTACATTCCAGGGGTTGTTATTTCATACATCTTAGTGCTAGGCATTTTTCTCTGGCCTTTGGTGTCGTCACATGAGTTTGGGATGTGGTTGGAACCAGTTCTGCAGAAACTGGACTTTGGAGTGGGCGAGTTTCTTCAGAAAATAAAGGAGAATCATGAGAAAAGAATACTCCAGTCACAAGCCAAGAGAGAGAGCATTGAAGCAGATCTGTCTGCACTTTTTCCCAAGATGGACTCCATCGTTTGCAAAGAGCTGTCTATATCTGACACAGAGGTCTCTGAAATAACATGGACAGACAATGGCACCTTTAACCTTTCAGAGGGACACACACCTCAGACAGAAAACTCTGAAGACTCAGACCGGCGAAGTGACGAGGAAGTCTTCACCGGCGGACTACCAGAGTTTCCTTCTTTAGACAATGGCTTAGGAACAAATGGAGATGACGATGAAGACCTGAGCATTGGGATGCCCACCCCTCCAGCCCACCCCAGCAGGGTCGGCTCCACACAGTCAGAGGAGGAACCCGTGGCCCAGGCCTTGGAGGTTGTGCAGAGGCTGGCTGGAGACGTAATCACAGCAGCAGTAACCGCAGCCATGCAGGAACGCCTGGAGGCAGCTGTAGCGCCTGCGCTGGTCCAGGCCCTGGCAGAGGAATCGGACAGTGAGGCGGAGGACTTTGAGTTGTTAGACCAATCAGAGCTGGAACAGCTGGAAGGCGAGCTGGGGCTGGATCGCTCGGGCCGTGCAGAAGCGTCTAAACCTAGCAAACCCTCTTCAGGCTTTCTGTCCAAACTACTGGGGCGccaatgattttattcagaggGGCTCTGCTTCCCTCTGTGATGGGATGTGGGTGGGAGGATAAATGTCGGGTTTACAGGAAAAGGTCCAGAGTAATGAAGGTATTCCATTGTTTTACTTTGCTGGTGTGATTCAGTCgttttaccataaaaaaaacaaagtcatcTGCTGAAGGAGGTTGCTTGTGTATTTCACGGGGAAGAAGACTGTGGCTGGTTTTGGCGTAGCTCCATCTCAGAAGGTCATCGGAGGAAATCCTGTCAACCTCCAACCCGCCAATGACCAGAGGGTTATGGACCAGAGTAAAGTCATTCGTTTAACTGTTAAAGGGCTGGTAGACGCAGGATAGTCCATATTTTGCtgccaaatattttttcttttttcaacttCACATAATTACTCCTAAAATAAAGCTTCATGGCCAAAGACTAAGGGCCTCCCACTAACTGACAATCAGGATAGCACttataaacaaacagaaaccaCACAACGagtatgtcattttatttgaaatattttgttttctaatttttttgtaattttttttttttttattaaggatTTTTGAGAAGCCGGTggataatgtaatgtaatcctTTGCATGGGTAGTCATGTTTTAGGCTTTTTACAATTTGCACCTTCTTTTAGAGTGAACCAACTAGGCACTAAAGTTGAACAGATTATGACTGAGATTCATATGAATATTCAtggttaacccaaaaatgaatgttttgtcattaatgtaattttatgaacaaaaatagtTACACGGAATATTCTCTCTTGTGTTACACAGAACTCAAACAGGTTTAGAAAAACATGGAATTGAGAAAATAGTTactatttttgggtgaacaaaataatgtacaaaaaGGCAAaccaaaaagtaaaatgcactTAATTCTCATAACTCGAAATATCTGCTTTCTGTGAGAAAGAGAGTAGTCTTTTATCAACTGACCCaatattcatatttgcttttttaagaCGCACATATAACCAAGACTGTTTCTGTTCACAGTGGTGCTTGGTGTGTATCTAATTTTAGTGTTTCTAACAAACTTCTGATGTATTATGAATTTTGTTTTGAGATGTATCAAACGCTTCCTATAACACATTAGCTGAACAGGATTTTCTGCCAGTGACTATAATGAGCACTATACAAAATGATTCTAATCAGTGTCAGTTtgagcactttttttaatttaaatatatttgttccTCTATATCTCTACTAGTAGATTGCTGCCACGCACATATGATCGCCTTATATGCCTGTGCAAGTTTGTCTGTCAGAGCGGAAGAGAATAAGCAAAATATAGTTGTATGAACAATCTCCAGAATGTAATTAAAACCTTCCAATTCAAAA

Function

NR:

description
reticulophagy receptor FAM134B isoform X1

GO: NA

KEGG:

id description
K23880 RETREG; reticulophagy regulator

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043217565.1 True 2802 mRNA 0.44 9 14823155 14834038

Neighbor

gene id symbol gene type direction distance location
and2 LOC107713965,LOC107751574,LOC107664022,LOC107585844,LOC107558199 coding downstream 4221 14815436 ~ 14818934 (-)
ralyl LOC107586268,LOC107686092,LOC107713968 coding downstream 10799 14796390 ~ 14812356 (-)
lrrcc1 lrrcc1,LOC107713973,LOC107686059,LOC107584102,LOC107751561,LOC107556739,LOC107664063 coding downstream 26968 14786980 ~ 14796187 (-)
e2f5 e2f5,LOC107686091,LOC107713982,LOC107584115,LOC107558188,LOC107664024,LOC107751573 coding downstream 36545 14779301 ~ 14786610 (-)
myripa LOC107686056,LOC107584120,LOC107713972 coding downstream 50896 14753340 ~ 14772259 (-)
nol7 LOC107584088,LOC107713966 coding upstream 16570 14850608 ~ 14852234 (-)
LOC122360536 NA coding upstream 30108 14864146 ~ 14882630 (-)
LOC122360578 NA coding upstream 39038 14873076 ~ 14874382 (-)
amph amph,LOC107584026,LOC107701027,LOC107556781 coding upstream 50717 14884755 ~ 14908765 (-)
fam49ba fam49ba,LOC107718035,LOC107556887,LOC107713994,LOC107701021,LOC107657432 coding upstream 184331 15018369 ~ 15033769 (-)
G12161 NA non-coding downstream 47664 14773753 ~ 14775491 (-)
G12085 NA non-coding downstream 118697 14703637 ~ 14704458 (-)
G12084 cacnb2b,LOC107751551,LOC107664070,LOC107713974 non-coding downstream 119662 14701308 ~ 14703493 (-)
G12083 NA non-coding downstream 122777 14699753 ~ 14700378 (-)
G12082 NA non-coding downstream 124136 14691177 ~ 14699019 (-)
G12176 LOC107664036,LOC107558964 non-coding upstream 18872 14852910 ~ 14853552 (-)
G12175 epdr1,LOC107664036,LOC107558964 non-coding upstream 19656 14853694 ~ 14855169 (-)
G12199 NA non-coding upstream 100731 14934769 ~ 14935025 (-)
G12308 NA non-coding upstream 389173 15223211 ~ 15223455 (-)
G12313 ccr9a,LOC107579348,LOC107733890,LOC107657446,LOC107730785,LOC107557055,LOC107700981 non-coding upstream 403921 15237959 ~ 15240826 (-)
adcyap1b adcyap1b,adcyap1,LOC107713980,LOC107686049,LOC107751550,LOC107664073 other downstream 212889 14578995 ~ 14610266 (-)
LOC122328470 ptbp1a,ptbp3,LOC107602545,LOC107674042,LOC107732511,LOC107584874,LOC107558691,LOC107658670,LOC107744247,LOC107729315,LOC107688524 other downstream 1258790 13553773 ~ 13564365 (-)
LOC122323969 cahz,LOC107550722,LOC107755757,LOC107664098,LOC107686019,LOC107585971,LOC107751363,LOC108432254 other downstream 1352892 13315229 ~ 13470263 (-)
xkr4 xkr4,zgc:123035,LOC107728991,LOC107679338,LOC107714844,LOC107674319,LOC106569249 other downstream 1985062 12789524 ~ 12838093 (-)
hltf hltf,LOC107688483,LOC107722619 other downstream 3208217 11592441 ~ 11614938 (-)
faim2a faim2a,LOC107718029,LOC107701017,LOC107556958,LOC107657438,LOC107709826 other upstream 286549 15120587 ~ 15127491 (-)
smarcd3a smarcd3a,smarcd3,LOC107657439,LOC107599876,LOC107709803,LOC107556978,LOC107718026,LOC103039772 other upstream 299933 15133971 ~ 15153989 (-)
ccdc24 ccdc24,LOC107657456,LOC107599905 other upstream 725625 15559663 ~ 15579706 (-)
pappa2 pappa2,LOC107722077,LOC107568983,LOC107678935,LOC107726923,LOC107658303,LOC107558342 other upstream 1390685 16224723 ~ 16268835 (-)
LOC122362257 LOC107658348,LOC107563587,LOC107678922,LOC107726920,LOC107722065,LOC107559085 other upstream 1649122 16483160 ~ 16512019 (-)

Expression


Co-expression Network