LOC122323665


Basic Information

Item Value
gene id LOC122323665
gene name NA
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 23920231 ~ 23925631 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043217674.1
TTGGGTTCATGTTTTCAGATGCCGCAAGGACAGACTACAGAAGtgataaacaaaacagattacagtatatatctacatttagttttagtatgTGTTGCTATGAAATACTATTTGAGGTTTCCTGGCTAGATGTCTGAAAGAAGGTGTTTCATACAAAAACCGATCGACTTCCTCTCCTTGACAGCATTACTAGCGTATCACAACGGCAGGTCAGACTCGTCTGTCTGCAAGCAATGGAATTTGGTCATGTTCTCATGTTCTTCATAGTTCTGATCTCCAGCACAGTATCCGGATCTGAAGACCATGTGTTCGTACAGACCGGGGCTCGGTTAAACtagtcataaaaataaaatgccacCACACTTTACTAGATTCACATGGATTAAtgataaatctgaaaatgtagtCAGAAATCAATCAGGAGAAATCAAACCTCACAGTTCATATAAGGACAGAATGGATTTCAATGCTAAAACCTACTCTCTAACACTGAGAAACATGCAGAAGAAAGATAGTGGACTCTACAGAGCAATCACAAGAGACAAACAAGAACTGTGTCATGCTGAATACAACATATCAGTTATAGATCCAGTGGATTCTCCTGTTCTGAAAGGAAACTTCACCATGATAAGTGTTAACGTCTGTGTCGTGAACGTCTCATGCAGTGGACCTGATCAAACAATCAGACACAGTTACCACAGCAACGACTGCACTCaagaggaagtgacatcatctGGAGTCCAGACTCTAGCCCTGTATTGTAGAAAGAACAGAGTTGTCTGTAACTACAGCAATCCAGTCAGCTGGAAGAATCAAACTATAGAGATTAACCAACTTTGTACACCTTATGAAAAAGAACATCCAGAAGAAAACAACAGctcttttcctctcttcctTTGGCTCTCGGTCATCGCTGGTGTATTTGTGCTGGTTTTCACAGTAGTTTCTGTATTCTACTGCTGTTACAAGAAGCGTAAAAGGGTCCTCAACAGAATGATCAGACAGTCTATGCACAAGTTCAGGTAAGCTTCAAATACTTTGTATAGTCATAACATAAAAAGAATACTCCTAATTCAACAATGAATTAATAACTCATAACACATAATTATCTAGAATGCACTTCACCGGAAGTCTTTCAAACATGTTTAGTAAGAAGTAAGAATAGTAAGAATATTATTAGCCATAGAGTTTTACATGTACAAAATGATATGACTGTTTGATCGGATTGTTCTGAAGCCAATGAATCAAGTGCAAAGACCCTGGAGATGTTGGAGAAATCAGCGAATCTTCAAACTGTGTATGGATTTACTGGGAACACAAACAAACTCACAATGCCAGTCAAATGCCTAGTCGCCAGACACAGGAACAGGTGCAAACAGAAAAGCGGCCCAGCACCACCTACAGTACAGTAGGACAACACCAAAAGCCATTATTTACCTCTAAACCAGATCCTACAATTTATTCAATGGTGTGTAAATCTAAGCAGGACAGACAACCTATGCATAAATAGCAGAGGTTACATTTATGTTCAACTGTGTTTGTTGATAGATATCTTGCAATAATTTTTAAGATATGATTAACATActgtcacacgtggactcctttgtgttgtttttgtcatgtgccatgagctctgtgtgacctactttagttaattgtcttagcgtcttcacctgtgtctcatTCATTAAGTTTTTACGTTGTGTATtcaagtcctgtgatttcagttctgtttgtccgatctcgtctatGTTATTGTGGTTTAGTTCATTTGCCTGTCTGCCTACCTCTCAGAGGTACTAATTCTATATATGTGTATGATTAAACTCGTTAACCTGA

Function

GO:

id name namespace
GO:0042611 MHC protein complex cellular_component
GO:0042613 MHC class II protein complex cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043217674.1 True 1839 mRNA 0.39 6 23920231 23925631

Neighbor

gene id symbol gene type direction distance location
hes6 hes6,LOC107737402,LOC107572989,LOC107728379,LOC107569265,LOC107679391 coding upstream 133976 23783724 ~ 23786255 (+)
lpar5a LOC107737401,LOC107698486,LOC107572991,LOC107679392,LOC107728381,LOC107569267 coding upstream 145048 23772880 ~ 23775183 (+)
LOC122356725 LOC107698487,LOC107737400,LOC107679394,LOC107572992,LOC107728385,LOC107569271,LOC793909 coding upstream 149739 23765958 ~ 23770492 (+)
trnaw-cca_1 NA coding upstream 183109 23737051 ~ 23737122 (+)
pitrm1 pitrm1,LOC107698483,LOC107679400,LOC107724807 coding upstream 204994 23703501 ~ 23715237 (+)
LOC122323657 NA coding downstream 4000 23929631 ~ 23931889 (+)
LOC122328481 LOC107599284 coding downstream 69552 23995183 ~ 23997150 (+)
LOC122324443 NA coding downstream 103373 24029004 ~ 24032203 (+)
LOC122327432 LOC107549368 coding downstream 145578 24071209 ~ 24073204 (+)
LOC122324938 NA coding downstream 153525 24079156 ~ 24081504 (+)
G14979 NA non-coding upstream 35815 23883762 ~ 23884416 (+)
G14978 NA non-coding upstream 40627 23879178 ~ 23879604 (+)
G14896 per2,LOC107572994,LOC107698490 non-coding upstream 115602 23803784 ~ 23804629 (+)
G14863 LOC107728390,LOC107572994,LOC107737392,LOC107569272 non-coding upstream 124328 23791262 ~ 23795903 (+)
G14889 NA non-coding upstream 140111 23777103 ~ 23780120 (+)
G14988 NA non-coding downstream 1409 23927040 ~ 23927250 (+)
G14989 NA non-coding downstream 1663 23927294 ~ 23927613 (+)
LOC122328475 NA non-coding downstream 60127 23985758 ~ 23986203 (+)
LOC122328496 NA non-coding downstream 67844 23993475 ~ 23994511 (+)
LOC122328489 LOC107750089,LOC107757802 non-coding downstream 68879 23994510 ~ 23995121 (+)
G14831 LOC107679389,LOC107745621,LOC107567694,LOC108428304 other upstream 372257 23545106 ~ 23547974 (+)
LOC122324535 NA other upstream 914977 23003165 ~ 23005254 (+)
fcer1gl LOC107671799 other upstream 1224901 22691199 ~ 22695330 (+)
LOC122327931 NA other upstream 1245956 22633529 ~ 22674275 (+)
LOC122327302 LOC107705949,LOC107599389,LOC107675701,LOC107737183,LOC107661566,LOC107586444,LOC107679834,LOC107719545,LOC107717972 other upstream 1434576 22461916 ~ 22485655 (+)
LOC122323670 NA other downstream 10290 23935921 ~ 23939016 (+)
LOC122327416 LOC107728372,LOC107569261,LOC107681443 other downstream 120054 24045685 ~ 24048465 (+)
LOC122327425 LOC107728372,LOC107569261,LOC107681443 other downstream 133781 24059412 ~ 24062202 (+)
LOC122327442 LOC107549368,LOC107569260,LOC107737397,LOC107681447,LOC107681444 other downstream 158207 24083838 ~ 24096897 (+)
abhd17aa abhd17aa,LOC107599293,LOC107757810,LOC107698472,LOC107600230,LOC108433103,LOC105904035,LOC108280794 other downstream 316241 24241872 ~ 24249991 (+)

Expression


Co-expression Network