klhl24a (klhl24,klhl24a,LOC107749171,LOC107600063,LOC107659963,LOC107721788)


Basic Information

Item Value
gene id klhl24a
gene name klhl24,klhl24a,LOC107749171,LOC107600063,LOC107659963,LOC107721788
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 21483779 ~ 21501610 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043217763.1
TCAAAGCCTGTATGTGCATTCTTTGTGCCAGAATACGCAGAGAGCGACTATGAAAAGGACGAtaacaaagaaaacattacagtgACAGCACAAGCGCGCGCTTATGGAtctcttttgtaaaaaaaaatatttagtttgttcGCATGTACTTTTAAGGATCTTTAACCCTTATTATTAAATTCGATGTTAGGCAGAAATTTGGTCTCCTGTGGATAAGGTGTTGATGGTCACCAGTCATTTTCCAGCAACCATAGTGATTGTTTATCTGTGAAGGGATCCCACCAGATACAATCATGGTGCTCATTCTGGGTCGCCGTCTGAATCATGAGAACTCTGGCGGTGTGCCGGAATCGCAGACAATCAAGCGTAAAGTCTTCGAGATCGAGTCTAAGACCCTGAGCGACGTGTACAACTTCTCTTCCGGTTCCTCTCACTCCGAGGGCGTCCTTCAGGTCTTCAATGAGTTCAGAGAAAGCCGCCTCTTCACGGATGTGATCATCAGCGTCCAGGGTCGTGAATTCCCTTGTCACCGTGCCGTGCTGTCGGCCTGCAGCAGTTACTTTCGTGCCATGTTCTGCAACGACCACAGAGAGAGCCGCGAGATGCTTGTGGAGATCAACGGCATCCAGGCTGACGCTATGGACACGTTCCTGCAGTATGTTTACACCAGTCGGGCCTGCATCACCACTCACAACGTCCAGTTCCTCTTCGAGACCTCCAGCCTCTTCCAGATCACCACGCTGCGGGATGCTTGCGCAAAATTCCTGGAAGAGCAGCTGGACCCCTGCAACTGCCTCGGGATCCAACGTTTCGCAGATGCCCACTCTCTCAAACAGCTGGCCAGTCACTGCCGTGCTTTCGCCTTGTTAAATTTTCCAGAGGTGGCTCAGCATGAGGAGTTCCTAGACCTCCACAAGGATGAGCTGCAAGAATACTTAGCCAGCGATGAGCTGTCCATTGGCAGAGAGGAGGTGGTGTTCGAGTCAGTGATGCGTTGGGTCTACCATGGCGTGGAGTACCGCAGACCCATGCTAAAAGATCTGCTACAACATGTCCGACTGCCTCTCCTGCACCCAAACTATTTTGTACAGACGgtggAAGGTGATAAATTGATCCAGAATGCACCAGAATGTTATCAGCTGCTGCACGAGGCACGTCGCTATCACGTACTTGGCAATGAGATGATGTCTCCGCGAACCAGACCCCGCAGGTCTACTGGTTTCTCTGAGGTCATTGTCGTTGTGGGAGGCTGTGAGCGAATGGGGGGTTTCAATCTGCCGTACACAGAATGCTACGACCCCGTGACGGGAGAGTGGACATCTCTTGCTAAACACCCCGAGTACACTAAGTCTGAGTATGCAGTGTGCGCCCTCCGCAATGATATCATTGTGTCAGgtgGCCGCATTAACAGCAGTTATGTCTGGATGTATAACTCTCAGCTCAACGTCTGGATCAGAGTGGCCTCTCTTAATAAGGGTCGATGGAGACACAAGATGACCGTCCTCCTGGGGAAGGTGTATGCAGTTGGAGGTTATGATGGACAGTCTTGTCTCAGTAATGTGGAGGTGTACGACTCATTCTCCAACCGCTGGACTGAGGTGGCCCCCATGAAAGAAGCCGTGTCCTGCCCGGCGGTCACCAGCTGTGCGGGAAAGCTTTTCGTCATTGGAGGAGAACCCTTTGAAAACAACTGCTCCAATAAGGTCCAGTGTTATGACCCAGAGTCAGACAGCTGGCAGCTGAAGGCATCTATTCCCTTCACCAAACCCAATATCTCTGCCGTTTCTCTCAATCACCTCATCTATGTATGTGGTGGCCTCACCAAGTCCATCTACTGCTACGACCCTTCACAGGACCACTGGATGCACGTGGGCCACACCTTCAGCAGACAGGAGAGTTGCGGTATGTCCATTTGTAATGGGAAGATCTACATCCTGGGTGGACGGGGAGAAAACGGCGAAGCCTCAAACAACATTGTGTGCTACGACCCAGCCTCTGGCATCATCACATCCACGGCTGCTATGCCTCGTCCCATCTCCTACCATGGCTGTGTCACCATACACCGTTTCagtgaaaaacaacacaaattctGAGAGCATCAGCTAATGTGCATGTAGGCTGCCCCTAACATGGAGCTACAGACTCTTAAATGAATATCAACTTTGCATTACTTTGCAACCGCTGGTATGTTTTTTCTGTCACTTATGCAACATGTTTAACTGCTACAGTTGATTTCAGCATCATGCCAAAGCTGTTATTATCTGTAAGACAGCAGTTGATGGACTTTTTTTGTGGAACAAGGAAGTATGTAAAACATAGCCTTCCTCATAACTGAAATACATTCAGAGAATAAATCATATGCGATGGAGTAATCGCATAGATGCCTTGATGACCTGTATAGATAAAGACTGCACAAATGCACACTTCctgtgctttttctttcttttccaagatttgttttgttggtCCGCCCACGCCCcccaagacatttttttaatcttatttttaaatgtacatttgtttaaactttttcatgtctttgttattttagtagcaTTATTGTTGCATTCtgacaatatttaaaaagtctgCAAATAGAAACTTAGGTTCAGTCCTGATTATAAcatgctttttactttttttttttttttaaatatcatattatgCTTTTGAGCTTAAGTGGAACAAAAGCACTTAAATACTGCATCGGACATGCTGTATAaggttttcattgtttttttgtttttttttttggtgcattcAAAGCATCTGAAAACCTAAGGCTGGAAAGCACACACCTCAGTGATGGACAGCTCTGATTTTGGTCAATGAATCGTCACGTCAGGTTCTTATGGGTTCTTAATGAACCGTTCAGCTGTGAAACTATTTTTTCCTGTGTATCATATCTTTATTTAAGCTTCTTTTACTTAATCTTTAGTGTGACAACAAGGACGTGCCTTTCTgatcttttgtttttgatcGGAGCCCCAATCATGCACTTGTATGTACTAGTGTTGGTAATATGGCAATGTAAATGCATTCTACTCATTCAACGTTATCTGTGTTATTTGACATTGTGCGTTGTAAACAATCTCATAGCTGTAGATAGCATCTGAATTTTAGAGTTGGAATACcagagatttgtgtgtgtgtgtgttcaaatgAACCTGGAACTGTTTTCAAGATAACCGCAGTCTCTGCTCTAGTACTTCTCAGTACTGGATGCAGAAATTAGCTGtcagaataattttttgtgtaattCATCTGAACGAGTCAGGCAGGATGCTGGCAGCTAGTTTACCCAAAGCACTGCATCTCCTGCATTTCTGCCtgcaatgaaaatataaaatatataagtgtctgtatatacttatttatgtattttcatataGATAATTGTTTTGTCCTTCGATCATTTTGATTAACTTCTTACTTTTTGTAAGTGTTATTTTGACAACATACTGTATGTTCCATTAtgcccttttttaaaaaataatatcttaTAATATAATACCCAGGTTTATATTTATCTGGGTTAGATGTGTTTTGTAGGATTGCGTGGACACAGTTGTCCCGAGCTCTGAGTTGGCTTCCAGCTCATTCAGAAGTATAACCTGGTATTTTTGTTGTGGTAGAAACATCTTAAAAATGCCGCTTCAGACCATTTCATTTCAGTGGAATGAAACTGCAGCCGCAATTGAGCGTGAGTCCAAAGCATAAGAAATATTGGACATGTTTCAgacataacaataataatattccaTACTTTGTAAAACTGCAAAAGTgcctcaataaaaaaaagttcacttgC

Function

symbol description
klhl24a Acts upstream of or within heart development. Is expressed in atrium; cardiac ventricle; heart; and heart rudiment. Orthologous to human KLHL24 (kelch like family member 24).
klhl24 Involved in intermediate filament organization and protein autoubiquitination. Located in adherens junction; cytoplasm; and desmosome. Part of Cul3-RING ubiquitin ligase complex.

NR:

description
kelch-like protein 24

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043217763.1 True 3811 mRNA 0.44 8 21483779 21501610

Neighbor

gene id symbol gene type direction distance location
LOC122354646 LOC107660261,LOC107749204,LOC107600105,LOC107692861,LOC107721704,LOC101885431,LOC107557850 coding upstream 2913 21477659 ~ 21480866 (+)
mterf4 LOC107749141,LOC107659952,LOC107721702,LOC107600070 coding upstream 6255 21474611 ~ 21477524 (+)
pask LOC107749168,LOC107600066,LOC107659937,LOC107692875,LOC107721791 coding upstream 9215 21462798 ~ 21474564 (+)
kcnab1b kcnab1b,LOC107600068,LOC107721779,LOC107557878,LOC107692887,LOC107749128,LOC108428302,LOC108280191,LOC104919203 coding upstream 21086 21423826 ~ 21462693 (+)
zgc:152670 NA coding upstream 86239 21391118 ~ 21397540 (+)
yeats2 yeats2,LOC107692872,LOC107721785,LOC107749094,LOC107600062,LOC107557852 coding downstream 2590 21504200 ~ 21532284 (+)
alg3 alg3,LOC107557882,LOC107749127,LOC107730451,LOC107660011,LOC107692886 coding downstream 130420 21632030 ~ 21637918 (+)
prss56 prss8,LOC107557855,LOC107600103,LOC107749207,LOC107660469,LOC107579557,LOC107692867,LOC105418127,LOC107692866 coding downstream 151130 21652740 ~ 21673600 (+)
chrng chrng,LOC107600056,LOC107749123,LOC107660019,LOC107692884,LOC107557864 coding downstream 174834 21676444 ~ 21681888 (+)
LOC122328123 LOC107730432,LOC107749146,LOC107600057,LOC107660295,LOC100536708 coding downstream 180421 21682031 ~ 21687571 (+)
G14212 LOC107557873,LOC107721701 non-coding upstream 113280 21365808 ~ 21370499 (+)
G14234 NA non-coding upstream 137678 21342371 ~ 21346101 (+)
G13983 kif5b,LOC108232928,LOC106522897,LOC106906931,LOC103138015,LOC106962517,LOC103479480,LOC101155960 non-coding upstream 314892 21166088 ~ 21168887 (+)
G13995 LOC107749107,LOC107659422,LOC107563825 non-coding upstream 329997 21152103 ~ 21153782 (+)
G13994 NA non-coding upstream 332643 21150658 ~ 21151136 (+)
G14285 NA non-coding downstream 55234 21556844 ~ 21557398 (+)
G14315 NA non-coding downstream 215161 21716771 ~ 21717992 (+)
G14316 NA non-coding downstream 218308 21719918 ~ 21720575 (+)
LOC122359002 NA non-coding downstream 309319 21810929 ~ 21812903 (+)
G14476 NA non-coding downstream 392998 21894608 ~ 21895131 (+)
LOC122354659 LOC107749134,LOC107659944,LOC107600069,LOC107692888,LOC107557869,LOC107721709,LOC101885494 other upstream 1137 21481134 ~ 21482642 (+)
G14211 NA other upstream 122071 21307407 ~ 21361708 (+)
G13998 LOC107659744,LOC107749160,LOC107563810,LOC107563823 other upstream 318957 21163942 ~ 21164822 (+)
LOC122326305 LOC107749119,LOC107602627,LOC107566983,LOC107690079,LOC107721763,LOC107721764,LOC107678697 other upstream 975388 20493174 ~ 20508391 (+)
G13882 LOC107749119,LOC107602627,LOC107721764,LOC107659530,LOC107721763 other upstream 998561 20481664 ~ 20485218 (+)
ece2a ece2a,LOC107660439,LOC107600061,LOC107557862 other downstream 31635 21533245 ~ 21621097 (+)
ccl20a.3 LOC107749165,LOC107660500,LOC107557866 other downstream 213073 21714683 ~ 21716290 (+)
LOC122327294 aknad1,LOC107749213,LOC107660326,LOC107730428,LOC107671582 other downstream 341965 21843575 ~ 21853007 (+)
fndc7a fndc7a,LOC107660526,LOC107671595,LOC107730461,LOC107568736 other downstream 355602 21857212 ~ 21867399 (+)
G14471 NA other downstream 359281 21860891 ~ 21861442 (+)

Expression


Co-expression Network