sec62 (sec62,LOC107684396,LOC107738178,LOC107706392,LOC107659352)


Basic Information

Item Value
gene id sec62
gene name sec62,LOC107684396,LOC107738178,LOC107706392,LOC107659352
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 17260811 ~ 17268079 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043217977.1
TCGCGAGACTTCCCTCCCCACTCTATTCGTGACCACGTCAAGGGAACCCAGAAGTTAGAAATCATGGCGGAGCGCAGGAGACACAAGAAGCGAATTCAGGAGGTCAGTGAACCTACCAAGGAGGAGAAGGCGGTGGCCAAGTACCTGCGCTTTAACTGCCCTACCAAATCCACCAACATGATGGGACATCGGGTGGATTACTTCGTCGCCTCCAAAGCAGTCGACTGTCTGCTGGATTCAAAGTGGGCCAAAACAAAGAAGGGCGAAGAAGCTTTGTTCACAACCAGAGAGTCGGTGGTGGACTACTGTAACAGGCTCCTGAAGAAGCAGTTTTTCCACCGAGCcctgaaagtgatgaagaagAAGCCAGAGAAAGACgtaaagaaagagaaggaaaaagagaaagaaaaagaaaaggctaAAAGTGACAGTGgcaaagaagaagagaaaaaaagcaaaaaggacaaagacaaaaagaaggAGTCTGAGGCTACAGAcacaaagaaggaaaaaaatGATGACAGTCCAGGATCtccaaagaagaagaaggatgTGAAAAAGAAATTCAAGCTGGAACCTCACGAGGACCAGCTGTTCTTGGATGGAAACGAGGTTTATTTTTGGATTTACGATCCAGTCCACTTTAAAACCTTTGCCATGGGCTTGATTCTAGTCATTGCCGTCATCGCAGCCACTCTGTTCCCTCTGTGGCCCGCTGAGATGAGAGTTGGTGTGTATTACCTGAGCGTGGCAGCAGGATGCTTCGTCGCCAGCATACTGCTCCTGGCCGTCGCTCGTTGTATCCTGTTCCTGATCATCTGGCTAGTGACCGGCGGCCGTCATCACTTCTGGTTCCTACCCAACCTGACAGCCGACGTGGGCTTTATCGACTCCTTCCGCCCCCTCTACACGCATGAATACAAGGGTCCGCGCTCCAGCTCCAAGAAATCCAGCGGCGAGAAATCCGACAACAAGGATTCCAGCAAAGCGCAGAAATCGGATAGCGAGGACAAATCGGACAGCGAGAAGAAAGACGGCGATGACGAAGACGATGACGACGACAATAAAGAAATGGAGGCGAGCGAGGAAGCGGGCGCAGAACGTCAGTCGGACACGGACAGTGACAGACGCGAGGACGAAGGGTCGCAGCACAGCAACGGCAACGACTTTGAAATGATCACCAGAGAAGAGCTGGAGCAGCACACAGAGGAAGACGAGGAAGAAGACGAGGAAGAGCAAAGCGAGACAAAGCCCTTGACTGTGCAGACATAAACGTTTTCCTCACGCCGCGCACATACTCCCATGCTCCATGTGGACCTGCTGACGTACTTCTGTCATGTTCGGAAGATGTTTCCCATTTCTGTTCAGGCTGAGATCTTCCTCTGTGAAAACAGACAGGCTTAAAGGTTAAACGAGAGCAGAAAACGGCTACGATGACAATGGAAAATACCGCTAAGGAAATGCTTCCCCCTACTTTGGTTGCAAGAACCGCAAATCTCCCTGAcccctgttttttttcttctttcatcttTGCTTTATCTAATGTcaagtattttactgtatacaCATGTCAGTAGTGGATTGGTGAGTTTTCACATATGAAGGCTCGCTGTCCAACCAAGTCAGAGAAATTCAAAtctggaagttttttttttttttttttttttttgtcttttgtaccttttagaTGTGTTGGATAATTTGGACGGACCAATATATTTTGTCTTAGATACCTATTAAGTGTTACTTTCTACCGTAAATCTCAATGGCACTTGGCCTGTGACATTTCTGTTTGGAAATCTGGGAGATCTTGCTTGGTTTGAGACGAGAGCTGTATTTTTGTGGACTTGTGACATGGTCTGTCTCATACATTTCTGCAATCATGTTTTGTGACCCTGATGAGAAATAGTCCTGGCTACTGGAAGTTAATAAATCCAAACAACATACTTGATTGTAGTAGGCAGTTATTTAAAACCAAACTCCAGTTGAGTCTCATGAGGTCGGCTGCGTCCGGAAGGGGAAACTACATCCACATTTGTGCCAAATGATGCTGGGTATTGATGGTTTTGTCATAAACATTCAAATTCCGACCAACTTCCAGACAAATAGTTCAAACGTCATGCTGTAGCTCGCATCCGTGCATCATAGCCTCCCATCTGGTCTTCAAACGCTGAGGTCGGCAAATCAAACATCCCTGAGGGGCTGTGGTCCAAAATAGCCTGTTAGTTAGTTAGCGTTTTAATAGGGCAGAAGTCCAATACTGTCCTGCCGTAGGGTTGCATACTATTGGCTAgagtattattttacattagctGTTTCTTTGACTCATACTGAGGATGATATTTAAGAgatgaaatacaaatgtatcatttatatatggattctatattctatatgtCTCCACCAGAGACATTCATGCCAGCAGTTCAGGTTCAGCATGAACTGTACTCTTATTTTATAATGTCAGACACGCAGGTTttcattttactgcattttctaCAAATACTAAAaccacaaaatattttcaacgATGGAAAGGTTGTGTTTGGACAATGTGTTGGAGTTGAAAAGCAGAAAAGATCTGTTCATCTACAGTGCTTTGACTCTAGTGGTCATCACGTGCGCACAAGAGACTGCAAAGGTGGTTTTTCTATAGTAAACCCTCGTTAAAGCATCCCTCAAAATTCATGGTCATCTCAAGTTCACAAGGAGCAGGAAACCCTCGTGCCTGAGTGAACATCTCTCGTTCTTCTTCAAATGCTAAGAAACTTTAACCATGTCTGTAAGTAGATGATCTTGTTGGTCACACTTAGTGTTCCTGTAGAAATACTATGTATGTCCTCAATATTCTTTGTCATTGACTTTGAAGACCTGGATAGACTGGGCTTGACACCATGTGTGTAACTAAagacattttgtattttctttcacCTGTTTTCTGTCCCATTGTCTTTGAGAGATAAAGATGCTGATATGccagattgatttttttttttttttttaattggcagGAAATTTAATTCACACCATTGACTGTCTGTCATAAAATGTAGTGTTACATCATTTATAAAAAGCAAACTGAAATCCcattattctttttaatgtgGTCAGCATCTTCAACTAACTAATTGTCCGTATTTGGATCAATGTTGAGGACTGTCTTTTTGCAATATCTGGAGAATAATTTAAGTGTCTGTCAGAAACTATATCTGTATCCTttcattgcaataaaaatatagaacaCAA

Function

symbol description
sec62 Predicted to be involved in posttranslational protein targeting to membrane, translocation. Predicted to act upstream of or within protein transport. Predicted to be integral component of endoplasmic reticulum membrane. Predicted to be active in endoplasmic reticulum and membrane. Orthologous to human SEC62 (SEC62 homolog, preprotein translocation factor).

NR:

description
PREDICTED: translocation protein SEC62

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0008565 obsolete protein transporter activity molecular_function

KEGG:

id description
K12275 SEC62; translocation protein SEC62

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043217977.1 True 3246 mRNA 0.43 8 17260811 17268079

Neighbor

gene id symbol gene type direction distance location
samd7 samd7,LOC107591340,LOC107557490 coding upstream 1063 17253232 ~ 17259748 (+)
apoda.2 apoda.2,LOC107557457,LOC107706325,LOC107591449,LOC107684429,LOC107738179 coding upstream 11569 17247935 ~ 17249242 (+)
copa copa,LOC107591337,LOC107684398,LOC107706393,LOC107659416,LOC107557408 coding upstream 16378 17234058 ~ 17244433 (+)
pex19 pex19,LOC107591335,LOC107684402,LOC107659417,LOC107557446,LOC107738253 coding upstream 26948 17229880 ~ 17233863 (+)
slc1a8b slc1a8b,LOC107591333,LOC107706395,LOC107557414,LOC107738183,LOC107659353,LOC108444332,LOC105889468 coding upstream 41613 17211876 ~ 17219198 (+)
gpr160 LOC107738252,LOC107684395,LOC107591343,LOC107706324 coding downstream 8771 17276850 ~ 17280393 (+)
phc3 LOC107738171,LOC107591347,LOC107557539,LOC107706383 coding downstream 65617 17333696 ~ 17343059 (+)
myadmb si:dkeyp-66d1.7,LOC107706376,LOC107668989,LOC107591450,LOC107738251,LOC107659403,LOC107557715,LOC103040076 coding downstream 205459 17473538 ~ 17478940 (+)
ftr66 ftr66,LOC107668987,LOC107591451,LOC107706375,LOC107659402,LOC107557692 coding downstream 212625 17480704 ~ 17485854 (+)
ltb4r2b LOC107668991,LOC107738160,LOC107706371,LOC107659397 coding downstream 233264 17501343 ~ 17506122 (+)
G12985 NA non-coding upstream 54330 17204414 ~ 17206481 (+)
G12982 diras1b,LOC107659419,LOC107591332,LOC107557388,LOC107684404,LOC107738254,LOC108236225,LOC103373792 non-coding upstream 70204 17187117 ~ 17190607 (+)
G12972 NA non-coding upstream 97839 17161176 ~ 17162972 (+)
G12823 map1sb,LOC107738188,LOC107659421,LOC107591330,LOC107684407,LOC107706295 non-coding upstream 125923 17133077 ~ 17134888 (+)
G12818 NA non-coding upstream 137444 17123139 ~ 17123367 (+)
G12977 LOC107706390 non-coding downstream 4575 17272654 ~ 17273162 (+)
G12995 NA non-coding downstream 13181 17281260 ~ 17285830 (+)
G13007 insra,LOC107591352,LOC107558844,LOC107706379,LOC107738166,LOC107668948 non-coding downstream 117983 17386062 ~ 17387548 (+)
G13075 NA non-coding downstream 211645 17479724 ~ 17480102 (+)
G13076 NA non-coding downstream 212144 17480223 ~ 17480494 (+)
golim4b golim4b,LOC107591324,LOC107684437,LOC107706331,LOC107559125,LOC107659375,LOC107738257 other upstream 220908 17032139 ~ 17039903 (+)
LOC122361622 NA other upstream 484460 16724614 ~ 16776351 (+)
LOC122323293 NA other upstream 804279 16450132 ~ 16456532 (+)
G12531 LOC107722077,LOC107568983 other upstream 992014 16267043 ~ 16268797 (+)
dars2 dars2,LOC107720851,LOC107700987,LOC107558296,LOC107599907 other upstream 1385047 15860179 ~ 15875764 (+)
sppl2 sppl2,LOC107738168,LOC107706381,LOC107591351,LOC107659410,LOC107668984 other downstream 94166 17362245 ~ 17369102 (+)
G13114 tep1,LOC107591368,LOC107706362,LOC107659385,LOC107738210,LOC107591364,LOC107738151 other downstream 298762 17566841 ~ 17567916 (+)
G13111 LOC107738210,LOC107591364 other downstream 339173 17607252 ~ 17608092 (+)
LOC122325453 LOC107668965 other downstream 511260 17779339 ~ 17782364 (+)
G13137 NA other downstream 516100 17784179 ~ 17816764 (+)

Expression


Co-expression Network