cldn11a (cldn11a,LOC107586547,LOC107732506,LOC107550596)


Basic Information

Item Value
gene id cldn11a
gene name cldn11a,LOC107586547,LOC107732506,LOC107550596
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 12092365 ~ 12094581 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043218296.1
GTAAAGCGTGATTTGTCAGTTTTGTTCTATATACTTGTCCTTTAGTATTGCATTACAGGCTACAAACATTACAGGGGAAAAGGAAGAGagtgaaaaataaagataaGGTGTAACGTTGGGAAGTGTCTGTTCTCGCGTGATTGGCTGACAGTTCTTTTGTGTCTGTACTTCCACTATAAAAGCTCGGCTAACGTTTTCTCTCACATTGTATGAGCTTGGAATACCGCGCAACGTAAGGATCTACAAAATCAACATGCTTTTTACGCCATGGATTAACATACCTGGATATTGCTacctataatttttttttgccaagtaACCTGTCTGGTTTTAGTTCTTCTGATTATCAGCTACTttaaagaatactttttttctcCCCGACTGTTGGACTCGTTTTTGCGCACACTGTACACTATGGCAAACACTTGCTTGCAGTTCACGGGTTTTGTGATGAGCTTTCTCGGTTGGATCGGACTTATCATCGCCACTGCCACTAATGAATGGGTAGCCACTTGTAAATATAACATGAACACCTGTAAGAAGATGGATGAGCTGGAGGCCAAAGGTTTGTGGGCGAACTGTGTGATCTCTACTGCGCTGTATCACTGCAGCACACTCACGCAGATCCTCGAGCTGCCAGcGTATATCCAGACGTCTCGAGCTTTAATGGTCACGGCATCGATTCTCGGGTTGCCTGCTGTCGCGCTCGTGCTCATGTCCATGTCCTGTATTAACCTCGGAAGTGAACCAGAAAGCGCCAAGAACAAGCGATCGGTGCTCGGAGGAACCATAATACTGCTGACTGCTTTTTGCGGCGTCGTCTCCACCGTGTGGTTTCCCATCGGGGCCCACCACGAGAGGGGCTTGATGTCCTTCGGCTTCTCCCTGTATTCGGGCTGGGTGGGCACTGCACTTTGTTTGCTGGGAGGCTGTATGATCACCTGCTGTTCAGTGGACACCCCCGCTACATACACTGACAACAACCGATTCTACTACTCCAAACAGGGCCCGGCTCATTCCGGCCCCACCTCCACTAACCACGCCAAAAGTGCTCACGTCTGAGCTTCGGGATTGCTGCTCAGATCTGATTTCTACTCtgtttctgctctctctctttttccactGTTTCTTGTTTCAGCAATGTCTCTATCTGCAGTGGCGGCTCTTTGGATAGTCATCGTTCGGCTGCGCTCTGACCTTTTGACACGGCAGCGGGGTTAGTCACCCAAAGGTTACATAATGAAGGACAGTTACTGTTGAAGGACCTGCAATGAAGGATTCAGTGTTTAAAGGGTCTTCTACTGATTCTGCTCAGTACAATGTGCCATTTCAAGTCCTATTTTTGTAGCGAGAAAtgagtttttgcatttttatatgaatactAACAGTATTGccagtgttgtttttattctaaatctttcagtttatttcagtCTGTTTGTACAGCTATATTTTCAATTTGGTTCATTTCGGAATAGCCGCCCAAACAAAACTGCACCAAAATTGGACCAAAGCAGTGATTATTTAGCAATACTATTTATTGTAATACTTGtatgcagtttttattaaatttgttgTAATAAACAATGCTGTTCATGTGAAAA

Function

symbol description
cldn11a Predicted to enable structural molecule activity. Predicted to be involved in bicellular tight junction assembly and cell adhesion. Predicted to be located in cell junction and membrane. Predicted to be integral component of membrane. Predicted to be active in bicellular tight junction and plasma membrane. Is expressed in brain; cardiovascular system; gill; integument; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in hypomyelinating leukodystrophy. Orthologous to human CLDN11 (claudin 11).

NR:

description
PREDICTED: claudin-11-like

GO:

id name namespace
GO:0005886 plasma membrane cellular_component
GO:0005923 bicellular tight junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG:

id description
K06087 CLDN; claudin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043218296.1 True 1604 mRNA 0.44 3 12092365 12094581

Neighbor

gene id symbol gene type direction distance location
ghsra LOC107586567,LOC107722546,LOC107688542,LOC107732507,LOC107550603,LOC107680230 coding downstream 188407 11901080 ~ 11903958 (-)
nceh1a nceh1a,LOC107709885,LOC107722613,LOC107688490,LOC107584973,LOC107550609,LOC107680241 coding downstream 397887 11691551 ~ 11694478 (-)
pccb pccb,LOC107688488,LOC107722577,LOC107709888,LOC107680238,LOC106574468 coding downstream 407306 11679913 ~ 11685059 (-)
slc35g2a slc35g2a,LOC107709891,LOC107550608,LOC107680231,LOC107586575,LOC107688541,LOC107722521 coding downstream 460565 11628145 ~ 11631800 (-)
nck1a nck1a,LOC107688485,LOC107585026,LOC107722651,LOC107709892,LOC107550612,LOC107680266 coding downstream 468261 11615823 ~ 11624104 (-)
rabggtb rabggtb,LOC107584851,LOC107732517,LOC107576861 coding upstream 167335 12261916 ~ 12266122 (-)
acadm acadm,LOC107688505,LOC107584839,LOC107674066,LOC107602542 coding upstream 172504 12267085 ~ 12270472 (-)
best4 best4,LOC107729385,LOC107674419,LOC107714835,LOC107602543 coding upstream 187501 12282082 ~ 12286011 (-)
si:ch211-106k21.5 si:ch211-106k21.5,LOC107688547,LOC107729472,LOC107714834,LOC107674086,LOC107602518 coding upstream 192844 12287425 ~ 12292955 (-)
LOC122328397 LOC107688509,LOC107729466,LOC107714866,LOC107674362,LOC107602512 coding upstream 198767 12293348 ~ 12319104 (-)
G11429 NA non-coding downstream 55936 12035009 ~ 12036429 (-)
G11425 slc2a2,LOC107586013,LOC107722632,LOC107680265,LOC107550598 non-coding downstream 59285 11943133 ~ 12033080 (-)
G11426 NA non-coding downstream 60640 12028135 ~ 12031725 (-)
G11366 NA non-coding downstream 272566 11817020 ~ 11819799 (-)
G11350 NA non-coding downstream 309964 11780111 ~ 11782401 (-)
G11549 NA non-coding upstream 177162 12271743 ~ 12272390 (-)
G11551 LOC107657932,LOC107700454,LOC107585903,LOC105895027,LOC107549844,LOC107743876,LOC107710907,LOC107579213 non-coding upstream 185177 12279758 ~ 12281210 (-)
G11565 NA non-coding upstream 244695 12339276 ~ 12359064 (-)
G11572 NA non-coding upstream 257898 12352479 ~ 12353826 (-)
G11561 NA non-coding upstream 267070 12361651 ~ 12366865 (-)
hltf hltf,LOC107688483,LOC107722619 other downstream 477427 11592441 ~ 11614938 (-)
G11317 pde4ca,pde4c,LOC107722623,LOC107680260 other downstream 514849 11576391 ~ 11577516 (-)
crsp7 crsp7,LOC107722610,LOC107688472,LOC107550620,LOC107709903,LOC107585090,LOC107680253 other downstream 639162 11447089 ~ 11453203 (-)
cnn2 cnn2,LOC107585101,LOC107688471,LOC107709904,LOC107550622,LOC107680261 other downstream 647252 11440990 ~ 11445113 (-)
kcnn1a LOC107722564,LOC107585128,LOC107718068,LOC107680246,LOC107589798 other downstream 686665 11379243 ~ 11405700 (-)
xkr4 xkr4,zgc:123035,LOC107728991,LOC107679338,LOC107714844,LOC107674319,LOC106569249 other upstream 694943 12789524 ~ 12838093 (-)
LOC122323969 cahz,LOC107550722,LOC107755757,LOC107664098,LOC107686019,LOC107585971,LOC107751363,LOC108432254 other upstream 1220648 13315229 ~ 13470263 (-)
LOC122328470 ptbp1a,ptbp3,LOC107602545,LOC107674042,LOC107732511,LOC107584874,LOC107558691,LOC107658670,LOC107744247,LOC107729315,LOC107688524 other upstream 1459192 13553773 ~ 13564365 (-)
adcyap1b adcyap1b,adcyap1,LOC107713980,LOC107686049,LOC107751550,LOC107664073 other upstream 2484414 14578995 ~ 14610266 (-)
faim2a faim2a,LOC107718029,LOC107701017,LOC107556958,LOC107657438,LOC107709826 other upstream 3026006 15120587 ~ 15127491 (-)

Expression


Co-expression Network