si:dkey-94e7.2 (si:dkey-94e7.2,LOC107686084,LOC107586344,LOC107732574,LOC107746919,LOC108440665,LOC108268141)


Basic Information

Item Value
gene id si:dkey-94e7.2
gene name si:dkey-94e7.2,LOC107686084,LOC107586344,LOC107732574,LOC107746919,LOC108440665,LOC108268141
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 14348581 ~ 14351572 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043218310.1
TGTACTGCTCATTTACATGGCTGACTTGTCACCTatcaattgttttaaatagttaCACATATTTTAGGTTAATTATATATGTGGGATATTTAGGTCAAAAACCTGCAGTGAATTTACAAAATCCACAAGGAATGAATTCACGCTGAGTTAACAGTAGACCAGTGCCTTAAACCGATTAGCTGTGGATTAGTCTGTTCGATTTCTAATCCACACCAATGCACTAAGGCTGACTCTAAACAATGCACTTTTCAGTGTAGTATCTGCAAACAACTCCAGAGGGAAGTCATGTGTTGTCTTTAGAGCATCTTTGCTTTGAGCAAGATGTCCAACATATACACTCTGAGAGAGATGTTTGGTGGCCAGTGGTCATCTAGCACACGACTCGATGGCAAAACAGTTATTATAACTGGAGCAAATACTGGCATTGGAAAAGAAACCACCAGAGACCTGGCAAAACGCGGGGCCAGGATAATAATGGCTTGCAGAGACCTTGAGAAAGCAGAAGGAGCACAGAAAGAGATCGTGGAGGACTCAGGGAACCAAAACATAGTGATCAGGAAACTAAATTTATCTGACACCAGGTCAATCAGAGAATTTGCTGAGGTAATCAACAACGAGGAAAGAGCTCTTCACATACTCATTAACAACGCTGGGATAATGATGTGTCCCTACTCTAAAACAGCAGATGGTTTTGAGATGCAGTTTGGTGTCAACCACTTagGTCACTTCCTGTTAACCTTCCTGCTGATTGATCTGCTGAAGAGATCTGCCCCCTCAAGAATCATCATCCTTTCCTCCATGGCTCATAGTTGGGGCACAATAGCTCTTGATGATATCAATAGCGAGAGGAATTACCACAGCAGGAGGGCATATGGTCAGAGTAAATTGGCCAATATCCTTTTTACTCGTTCCTTGGCCAAAAAACTCACAGACAAAGGTGTTACAGCATACGCAGTCCATCCAGGAATTGTGCGAACAGAACTTAAAAGACATATGAATCTCGGACTTCTAATCATGTGGAAGGTTGTCAGACCTTTCACAAAGACCCCAGTGCAGGGAGCACAAACTACAATCTACTGCGCAGTGGAACCAGAGTTAGACAAAGAGAGTGGAGGTTACTACAGCAACTGCAGACCTTCACAATGCACCAGAGCTGCAAGGGATGATGAAATGGCTGAGAAACTTTGGGATCTCAGCTGCAAAATGTTGGGGATAGTCTGGGACTGAACACTAAATAGTCTGTTTTCCataaacaattaattatatccattgttatttactattattattgttatttacaaTTACTTCCAACATGAACACCCAAGTAAATTCCAAGGCACAAACTCttatcaacaaacatttctttcttagtataggttgtttttatttcaagtcaaacaacatttccagtcattcttttttccattcacaGACCACCATTTGCATTATCAAATCCATTTTCATTATCAAATGGTCTAGACTCtgatataattacattatacgTCAAGCATGTAACAATTATACACTGGAATTAAAGTTGATTTTAGCTTTTAACCTTCCACGGGTAATCTTTCCTTAAACCCCACATAGTTTTTTTGAGAACTAATTTGTCCAGATTCAAGAGCTTCTTAGATCAAGCCCTGTCTATACACATTCATTTTTTGATTCTGTCAATGTTTGTTCAATCTCTtttcaatgttttgtttatgaTTTGTCAGATTtagtttgtaaaatataatctgtgttaaattttaattatgtaaatcaGATGAGGAGAATgtgtacatgtacatatattacaaaatatattgagCTGATGCAAATAAGTATATAACACCTTAATTTATACAATTAATCAAGTGATCCTTTGTAAAGGTgatgcaatttttatttgatatgagcacaataaaaaataatcacatttaatgtgAT
>XM_043218319.1
AGATGTCCAACATATACACTCTGAGAGAGATGTTTGGTGGCCAGTGGTCATCTAGCACACGACTCGATGGCAAAACAGTTATTATAACTGGAGCAAATACTGGCATTGGAAAAGAAACCACCAGAGACCTGGCAAAACGCGTTGTTCCACAGGGGCCAGGATAATAATGGCTTGCAGAGACCTTGAGAAAGCAGAAGGAGCACAGAAAGAGATCGTGGAGGACTCAGGGAACCAAAACATAGTGATCAGGAAACTAAATTTATCTGACACCAGGTCAATCAGAGAATTTGCTGAGGTAATCAACAACGAGGAAAGAGCTCTTCACATACTCATTAACAACGCTGGGATAATGATGTGTCCCTACTCTAAAACAGCAGATGGTTTTGAGATGCAGTTTGGTGTCAACCACTTagGTCACTTCCTGTTAACCTTCCTGCTGATTGATCTGCTGAAGAGATCTGCCCCCTCAAGAATCATCATCCTTTCCTCCATGGCTCATAGTTGGGGCACAATAGCTCTTGATGATATCAATAGCGAGAGGAATTACCACAGCAGGAGGGCATATGGTCAGAGTAAATTGGCCAATATCCTTTTTACTCGTTCCTTGGCCAAAAAACTCACAGACAAAGGTGTTACAGCATACGCAGTCCATCCAGGAATTGTGCGAACAGAACTTAAAAGACATATGAATCTCGGACTTCTAATCATGTGGAAGGTTGTCAGACCTTTCACAAAGACCCCAGTGCAGGGAGCACAAACTACAATCTACTGCGCAGTGGAACCAGAGTTAGACAAAGAGAGTGGAGGTTACTACAGCAACTGCAGACCTTCACAATGCACCAGAGCTGCAAGGGATGATGAAATGGCTGAGAAACTTTGGGATCTCAGCTGCAAAATGTTGGGGATAGTCTGGGACTGAACACTAAATAGTCTGTTTTCCataaacaattaattatatccattgttatttactattattattgttatttacaaTTACTTCCAACATGAACACCCAAGTAAATTCCAAGGCACAAACTCttatcaacaaacatttctttcttagtataggttgtttttatttcaagtcaaacaacatttccagtcattcttttttccattcacaGACCACCATTTGCATTATCAAATCCATTTTCATTATCAAATGGTCTAGACTCtgatataattacattatacgTCAAGCATGTAACAATTATACACTGGAATTAAAGTTGATTTTAGCTTTTAACCTTCCACGGGTAATCTTTCCTTAAACCCCACATAGTTTTTTTGAGAACTAATTTGTCCAGATTCAAGAGCTTCTTAGATCAAGCCCTGTCTATACACATTCATTTTTTGATTCTGTCAATGTTTGTTCAATCTCTtttcaatgttttgtttatgaTTTGTCAGATTtagtttgtaaaatataatctgtgttaaattttaattatgtaaatcaGATGAGGAGAATgtgtacatgtacatatattacaaaatatattgagCTGATGCAAATAAGTATATAACACCTTAATTTATACAATTAATCAAGTGATCCTTTGTAAAGGTgatgcaatttttatttgatatgagcacaataaaaaataatcacatttaatgtgAT

Function

NR:

description
PREDICTED: retinol dehydrogenase 12-like isoform X3

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043218310.1 True 1932 mRNA 0.37 7 14348581 14351572
XM_043218319.1 False 1624 mRNA 0.38 7 14348900 14351572

Neighbor

gene id symbol gene type direction distance location
ankrd33bb ankrd33bb,LOC107550706,LOC107732577,LOC107686083,LOC107664029 coding upstream 74961 14262564 ~ 14273620 (+)
march6 march6,LOC107746911,LOC107686038,LOC107732575,LOC107664076 coding upstream 86167 14245255 ~ 14262414 (+)
atpsckmt fam173b,LOC107664046,LOC107746922,LOC107550697,LOC107686036,LOC107732578 coding upstream 103637 14242673 ~ 14244944 (+)
LOC122355826 LOC107746923,LOC107732576,LOC107550699,LOC107686037,LOC107664020 coding upstream 106709 14233819 ~ 14241872 (+)
socs6b LOC107746913,LOC107584321,LOC107686035,LOC107664088,LOC107732589,LOC107550707 coding upstream 130030 14214494 ~ 14218551 (+)
tcea1 tcea1,LOC107746907,LOC107664035,LOC107558928,LOC107732572,LOC107686041,LOC107584254 coding downstream 12349 14363921 ~ 14368090 (+)
atp6v1h atp6v1h,LOC107664082,LOC107686042 coding downstream 28499 14380071 ~ 14410644 (+)
oprk1 oprk1,LOC107586336,LOC107746918,LOC107664042,LOC107732559,LOC107558938 coding downstream 70664 14422236 ~ 14426212 (+)
chmp5a chmp5,LOC107732555,LOC107664100,LOC107558945,LOC107586329,LOC107686086,LOC107746917,LOC108440659 coding downstream 77359 14428931 ~ 14432593 (+)
bag1 bag1,LOC107746903,LOC107556611,LOC107732557,LOC107664079 coding downstream 81556 14433128 ~ 14436377 (+)
G11832 rpl7,LOC107664057,LOC107584398,LOC107686030,LOC107550715 non-coding upstream 162795 14136114 ~ 14185786 (+)
G11856 jph1b,LOC107686034,LOC107746914,LOC107550709,LOC107584332,LOC107732545,LOC107664083 non-coding upstream 181626 14108155 ~ 14166955 (+)
G11855 NA non-coding upstream 184204 14131759 ~ 14164377 (+)
LOC122357607 NA non-coding upstream 249734 14091564 ~ 14098847 (+)
G11836 NA non-coding upstream 296961 14048717 ~ 14051620 (+)
G11894 NA non-coding downstream 18116 14369688 ~ 14371834 (+)
G11895 rgs20,LOC107584260,LOC107746905 non-coding downstream 20346 14371918 ~ 14375750 (+)
G11898 LOC106524523,LOC107383785 non-coding downstream 37413 14388985 ~ 14437409 (+)
LOC122355240 NA non-coding downstream 143878 14495450 ~ 14497873 (+)
G11914 NA non-coding downstream 208288 14559860 ~ 14603545 (+)
G11854 jph1b,jph1,LOC107584332,LOC107550709,LOC107746914,LOC107732545,LOC107664083,LOC107686034,LOC107740042 other upstream 168966 14175364 ~ 14179615 (+)
rnf152 rnf152,LOC107729101,LOC107679332,LOC107567413,LOC107674343,LOC107714840,LOC107584540 other upstream 1474573 12867929 ~ 12874008 (+)
LOC122358236 NA other upstream 1722194 12623823 ~ 12626387 (+)
pld1a pld1a,LOC107688495,LOC107550602,LOC107680234,LOC107722545,LOC108442335 other upstream 2410991 11908073 ~ 11937590 (+)
mast3a LOC107722547,LOC107688474,LOC107680242,LOC107550619,LOC107709878,LOC107586070 other upstream 2840877 11482104 ~ 11507704 (+)
plxdc2a LOC107686089,LOC107713976,LOC107751571 other downstream 394535 14746107 ~ 14753161 (+)
ackr4a LOC107664061,LOC107751559,LOC107556724,LOC107751558,LOC107751560,LOC107713978,LOC107586293 other downstream 424750 14776322 ~ 14782977 (+)
LOC122357435 LOC107733881,LOC107599885,LOC107657419 other downstream 890225 15241797 ~ 15249249 (+)
dars2 dars2,LOC107720851,LOC107700987,LOC107558296,LOC107599907 other downstream 1508607 15860179 ~ 15875764 (+)
G12531 LOC107722077,LOC107568983 other downstream 1915471 16267043 ~ 16268797 (+)

Expression


Co-expression Network