zgc:113531 (zgc:113531,LOC107739831,LOC107599893,LOC107657421,LOC107557127,LOC107730792,LOC107700978)


Basic Information

Item Value
gene id zgc:113531
gene name zgc:113531,LOC107739831,LOC107599893,LOC107657421,LOC107557127,LOC107730792,LOC107700978
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 15580143 ~ 15585173 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043218409.1
CTTTCACTGTGCGCGACAACCTCCAATGCGCACACAGTCCATTCTGACCATGAAAGGGTTTTTAAACTTTACGTAGTTTATAGCAAGTTTTTGAAGATAGCATAGTCAATCGTTTTTATGCTGCATTTGCAATTCTTGGTTTGGGACTAAGAAGTTTTTGGTGATGGGCATGGCTGTACTCTGGGGTTCCCCTGTGAGTTTTCTTCATGTCTGGCTTACCCTGATGATCTGCGGCCAGTGTGCTGTGGCTTTTTCGGTCGCTGGACAACAGGTGACGACCTGTGAGGCGAACGGCAGTGTTTATTATGTGGGCGAATGGTACTTTTTAGACTCGGATCATTGTTCCCAGTGCGAATGTACACCAGAAGGGTCCGCTTGCGCGCTGACCGAGTGCTCATCCCTGCCTGCCGCCTGCATCCATGTCAGCCATTACCCGACAGACTGCTGCCCGAGATGCGAGAAGATCGGCTGCGAGTACGGGGGAGAAGTCTACGAACTGGGCCAACAATTTCAGCCGTCAGCATGTGAGCAGTGCACTTGTCACAGCGACGGCATCGCCCGCTGTCAGGTCGCAGACTGCGCCCCTCCACCGTGTGTTAACCCCGTCtaccaaaaaggaaaatgctgCCCTCAGTGCGAGGATGGGCCCAACTGTTACGTGAATGCCTCTAGAACCCAAGTGATCCCTGGAGGTGAGCCAGTGTGGGTCGACTCCTGTACCAAATGCCGATGTCATGACGGTCAGGATGCAGGTTACTGGGAAGGTAACCGCTTGGCAACGTGTTCCCATGTGCACAACTGCCAGCCTGACAAGGGGCTAAACTGAGAAGAGAGATCAAAAATAGGGTCATCTTTCATCCTTGTTTATACAACGAATGACAAAACTCAGCAGATATTTAAACCACGCTTGCAGAAGAAAATGTGGAGGCTATTTAGCCTACAAACCTTatccagttaaaaaaaagtgtattattctttatatttcttCTTATGCTAACTAACCAAGTACAATGACTTACTAAGGGATATTTCCTTATGAAACAGCTAATAGAGCTTAGTATTGAGACACCTTTTTGGACATGAGAACATATTGACATCTACAGTACATCTGCAAATGCAATGATtatccacaatttttttttattaatgtttttacacgATTTGAAATAGCAtgtatgttaatgttattttctgCTTCAAAAGCCTGAAAGCCAAAGTATCGAGAATTGCAAGACTTACATTACTGCCATGCAGGCATGGAAACAGCTAATGTAGCatgaaatacaaacaaacctgtcataaatgaatcatgtataaataaagcagGCTCATTTTTGCTTGATTTCCGTTCTAACACCTCATTTTAAAAGCTGAGGTAATattgcttcttcttttttttttcccgaggACTGTATTTGCAGCAATGACAGAAAGTACACAGATATAAACAAACCACAAGTGATCTATGTGTCTTGTCTTATTATCCAATATATGAAGTTAGAGGATG

Function

symbol description
zgc:113531 Predicted to be involved in negative regulation of BMP signaling pathway. Predicted to be located in extracellular region and synapse. Predicted to be part of AMPA glutamate receptor complex. Predicted to be active in extracellular space. Is expressed in neural tube and spinal cord.

NR:

description
PREDICTED: von Willebrand factor C domain-containing protein 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043218409.1 True 1507 mRNA 0.44 3 15580143 15585173

Neighbor

gene id symbol gene type direction distance location
slc6a9 slc6a9,LOC107739827,LOC107657455,LOC107730788,LOC107700995,LOC107557089,LOC107599892 coding upstream 15813 15521048 ~ 15564330 (+)
klf17 klf17,LOC107739832,LOC107657420,LOC107599908,LOC107730790,LOC107700996,LOC107559026 coding upstream 61167 15516806 ~ 15518976 (+)
rnf220a rnf220a,LOC107700999,LOC107657453,LOC107739829,LOC107557077,LOC106599374,LOC107599891,LOC107730793 coding upstream 107393 15360754 ~ 15472750 (+)
tmem53 tmem53,LOC107730786,LOC107733878,LOC107700979,LOC107599888,LOC107657452 coding upstream 310647 15267129 ~ 15269496 (+)
opn4.1 opn4.1,LOC107599887,LOC107733886,LOC107559015,LOC107730802,LOC107701002 coding upstream 313938 15261961 ~ 15266205 (+)
kiss1ra LOC107657423,LOC107599909,LOC107722062,LOC107700977,LOC107559038 coding downstream 109035 15694208 ~ 15705571 (+)
kif2c kif2c,LOC107599896,LOC107657458,LOC107720856,LOC107700992,LOC107558283 coding downstream 169402 15754575 ~ 15761754 (+)
klhl20 klhl20,LOC106569069 coding downstream 263911 15849084 ~ 15856755 (+)
astn1 astn1 coding downstream 446810 16031983 ~ 16224471 (+)
cop1 rfwd2,LOC107726924,LOC107678936,LOC107722073,LOC107658354 coding downstream 689897 16275070 ~ 16285558 (+)
LOC122357737 NA non-coding upstream 79829 15498524 ~ 15500314 (+)
G12321 prpf4ba,LOC107701001 non-coding upstream 327099 15252494 ~ 15253044 (+)
G12255 NA non-coding upstream 399889 15118457 ~ 15180254 (+)
G12273 NA non-coding upstream 429268 15148605 ~ 15150875 (+)
G12211 NA non-coding upstream 543137 15034929 ~ 15037006 (+)
G12419 NA non-coding downstream 91030 15676203 ~ 15678446 (+)
G12432 NA non-coding downstream 137913 15723086 ~ 15804921 (+)
LOC122356092 NA non-coding downstream 146646 15731819 ~ 15742798 (+)
G12451 NA non-coding downstream 225720 15810893 ~ 15811393 (+)
G12491 NA non-coding downstream 292961 15878134 ~ 15878404 (+)
LOC122357435 LOC107733881,LOC107599885,LOC107657419 other upstream 330894 15241797 ~ 15249249 (+)
ackr4a LOC107664061,LOC107751559,LOC107556724,LOC107751558,LOC107751560,LOC107713978,LOC107586293 other upstream 797166 14776322 ~ 14782977 (+)
plxdc2a LOC107686089,LOC107713976,LOC107751571 other upstream 826982 14746107 ~ 14753161 (+)
G11854 jph1b,jph1,LOC107584332,LOC107550709,LOC107746914,LOC107732545,LOC107664083,LOC107686034,LOC107740042 other upstream 1400528 14175364 ~ 14179615 (+)
rnf152 rnf152,LOC107729101,LOC107679332,LOC107567413,LOC107674343,LOC107714840,LOC107584540 other upstream 2706135 12867929 ~ 12874008 (+)
dars2 dars2,LOC107720851,LOC107700987,LOC107558296,LOC107599907 other downstream 275006 15860179 ~ 15875764 (+)
G12531 LOC107722077,LOC107568983 other downstream 681870 16267043 ~ 16268797 (+)
LOC122323293 NA other downstream 864959 16450132 ~ 16456532 (+)
LOC122361622 NA other downstream 1139441 16724614 ~ 16776351 (+)
golim4b golim4b,LOC107591324,LOC107684437,LOC107706331,LOC107559125,LOC107659375,LOC107738257 other downstream 1446966 17032139 ~ 17039903 (+)

Expression


Co-expression Network