LOC122324221


Basic Information

Item Value
gene id LOC122324221
gene name NA
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 19629741 ~ 19631130 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043218497.1
TTCACAGAGGGTGGTGAGCTTTGTGGGCTGAAAGACCTCCTTCAACATAGACCCTTCAGCCCAGCAGAAAGTTTCATGATTAGAAGTGCGCAACAGAACAAGATGAAGTTCACTCTATATGCTGGCTCTCTTTTGTTTATAGGATGGATGAGTGTGGTCTTAGCAgCTGATGGGCCTCCACCAGACTGCTGTATTACTGTGTATAACACCAGAATATCACCTGAAAACATTTTGAGCTTTACTTTACAAGAAAAAGCAATGTGTCCTGTCAGAGCTGTAAGATTCCTGACCAGATTTAACAAAGTTATTTGTTCAGATCCTGAAAGCATATGGGCTAAGAGAGTAATAACGTTATTGGGGAGGAGAACAACAACTACATCTGCTATGTGCTCTACAATTACAACAAACACGAGCCCAACTACAGTTACAACAGACATAACATCGGGAACAGACACCGAGATCAGCACAAGTACAAACGTAACACCAGCAGTGATGACACTCAAAACACCTAAAATGGATACCAGCACAAGTATAATAGTGCCAACAACAGCAACATCAATCGAAACATCTAGATCAGATACAGAGATCAGCAAAACAACCATCCAACCAACTTCAGTGTCCACAGACGACCCAGAATCTACTGCAATAACATGTGCGACAGGTGAAACAACTGCAACATCAACAGAGGAGAGACGGGAAACAGCTGGAAAAGGGGAAGTTACACCTCTGAACACATTTACAACGACGGACAACACAGTGATCATCACAACGCAAGATAACAGACGTTACAGGACAAAACTGTCAAAGTTAAGAAAAAAACCTAGGAAAAGCAAGAAAGGACTTCGAAAATATCAGATGAGAAGTGACCgtctaaaaaataatactagGTAAAACTGgagaatttaataaatataggcATTTTTGCAGTAGGTTTAAATTTATTGACGATGGATTGTAAATCGAAGCACTACAGATAtttagtcctagactaaaactgatttttattattggtCTTTTAATTGTAGACTAGTTCAGTTATGTGGTGTGTTTGTACAgagtgtaatttaaaataatttggttttattattgtttattaaaaagtaattcaataaatattcaatataaataaaatgaaacgtcctattacagtaat

Function

GO:

id name namespace
GO:0015629 actin cytoskeleton cellular_component

KEGG:

id description
ko04015 Rap1 signaling pathway
ko04510 Focal adhesion

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043218497.1 True 1153 mRNA 0.38 3 19629741 19631130

Neighbor

gene id symbol gene type direction distance location
LOC122357116 NA coding upstream 4403 19622041 ~ 19625338 (+)
LOC122326186 NA coding upstream 9849 19618385 ~ 19619892 (+)
ccl20l LOC107708274,LOC107668934,LOC107583148,LOC107706309 coding upstream 27797 19600097 ~ 19601944 (+)
zgc:136870 LOC107668990,LOC107580513,LOC107738198 coding upstream 279723 19348346 ~ 19350018 (+)
LOC122361922 LOC107712402,LOC107573958,LOC107702059,LOC107681930,LOC107729611,LOC106569547,LOC107572764 coding upstream 806292 18809418 ~ 18823449 (+)
epha4b epha4b,LOC107694655,LOC107668971,LOC108428906,LOC108268054,LOC103372263 coding downstream 13480 19644610 ~ 19745895 (+)
acvr1l acvr1l,LOC107678695,LOC107749086,LOC107602619,LOC107721710,LOC107690001 coding downstream 663455 20294585 ~ 20303774 (+)
odf3l2a zgc:110183,LOC107749223,LOC107602632,LOC107721708,LOC107588920,LOC107690329,LOC107678684 coding downstream 802339 20433469 ~ 20435422 (+)
vcpip1 vcpip1,LOC107567007,LOC107721719,LOC107659314,LOC107690121,LOC107749097,LOC107602633 coding downstream 888779 20519909 ~ 20529006 (+)
LOC122358486 LOC107602635,LOC107566996,LOC107721759 coding downstream 906407 20537537 ~ 20539554 (+)
G13768 NA non-coding upstream 13686 19613459 ~ 19616055 (+)
G13769 NA non-coding upstream 16836 19612269 ~ 19612905 (+)
G13748 NA non-coding upstream 88763 19538570 ~ 19540978 (+)
G13690 NA non-coding upstream 466399 19163105 ~ 19163342 (+)
G13682 NA non-coding upstream 496605 19132729 ~ 19133136 (+)
G13829 znf622,LOC107678698,LOC107602620,LOC107588872 non-coding downstream 680916 20312046 ~ 20314981 (+)
G13821 NA non-coding downstream 686051 20317181 ~ 20321388 (+)
G13857 NA non-coding downstream 832608 20463738 ~ 20463959 (+)
G13874 NA non-coding downstream 834397 20465527 ~ 20465846 (+)
G13851 LOC107721736 non-coding downstream 846833 20477963 ~ 20499950 (+)
rem2 LOC107583115,LOC107567555,LOC107668956,LOC107738122,LOC107706340 other upstream 1467599 18138644 ~ 18162142 (+)
nedd8l nedd8l,LOC107591390,LOC104949953,LOC104931181,LOC107559219 other upstream 1758325 17870258 ~ 17871416 (+)
G13137 NA other upstream 1812977 17784179 ~ 17816764 (+)
LOC122325453 LOC107668965 other upstream 1847377 17779339 ~ 17782364 (+)
G13111 LOC107738210,LOC107591364 other upstream 2021649 17607252 ~ 17608092 (+)
crlf1a crlf1a,LOC107602622,LOC107678692,LOC107588877,LOC107690059 other downstream 785073 20416203 ~ 20429348 (+)
gbp2 LOC107678697,LOC107602627,LOC107690079,LOC107721763 other downstream 836138 20467268 ~ 20473524 (+)
G13882 LOC107749119,LOC107602627,LOC107721764,LOC107659530,LOC107721763 other downstream 850534 20481664 ~ 20485218 (+)
LOC122326305 LOC107749119,LOC107602627,LOC107566983,LOC107690079,LOC107721763,LOC107721764,LOC107678697 other downstream 862044 20493174 ~ 20508391 (+)
G13998 LOC107659744,LOC107749160,LOC107563810,LOC107563823 other downstream 1532812 21163942 ~ 21164822 (+)

Expression


Co-expression Network