LOC122324242 (ephb1,LOC107549839,LOC107671589,LOC108430182,LOC106599529,LOC103359190)


Basic Information

Item Value
gene id LOC122324242
gene name ephb1,LOC107549839,LOC107671589,LOC108430182,LOC106599529,LOC103359190
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 22134354 ~ 22326172 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043218532.1
TCCAAGCTCTCGTCTCTGCGCTCCGCGTCCGTGGCAGCATCCACTCACTCTTTTACTACTGCCTGCGATGTGACTCCACgccgctcgctcgctcgctggAATATCACCCTGCGTGACAAGTGACGGATTTTACGCGCACGCCACGCCGTCCGGTTTTCCAAATTCAAGGGGGACACCGCGGCAGCGGCCAATGCCTTTTATCATGACTGTGGGATTAATAACGGCTTTGTGTGCTGTAACTGCCGTTTTTGCGATGGAAGaAACGTTAATGGACACCCGGACCGCCACAGCAGAGCTCGGGTGGACGGCGTACCCTTCGTCAgggTGGGAAGAAGTAAGTGGCTATGACGAGAATCTCAACACCATCCGAACGTACCAGGTGTGTAACGTCTTCGAGCCGAACCAGAACAATTGGCTTCTCACCACCTTCATCGCACGACGTGGTGCTCAGCGCATCTATGTGGAGATGCGTTTCACCGTCCGAGACTGCAGCAGCATCCCGCGGGTGCCTGGATCCTGTAAGGAGACCTTTAACCTGTACTACTACGAGACGGACTCCGTCATCGCCACCAAAGGTACGGCGTTCTGGATGGAGGCTCCGTATTTGAAGGTGGACACCATCGCAGCGGACGAGAGCTTCTCACAGGTGGATTTTGGCGGTAGATTGATGAAAGTGAACACAGAGGTGCGGAGCTTCGGTCCGTTGTCGAAAAACGGCTTTTATTTGGCATTTCAGGACTACGGCGCATGCATGTCCCTGCTGTCTGTCCGTGTGTTTTATAAGAAATGCCCTAGCGTGGTGCAGAACTTTGCGATATTTCCAGAGACCATGACTGGCGCAGAGAGTACCTCGCTGGTGATCGCTCGTGGGATGTGCATCCCAAATTCTGAGGAAGTGGACGTACCTATTAAGTTGTATTGTAATGGAGATGGAGACTGGATGGTTCCGATTGGGAGCTGCACCTGCAAGGCAGGATTCGAGCCAGATAACGGGAACGTTTGTCGAGctTGCCCTCCGGGGACGTTCAAGTCCAGTCAAGGAACGGGTTTGTGTCTTCAGTGTCCGTCCAACAGCAGGTCCACGTCTGAAGCGGCCACTATCTGCGTCTGCAGGAACGGCTACTACCGAGCAGACGGAGAACAGCCAGACATGCCCTGCACCaGTGTTCCCTCCGGACCAAGAAATGTCATCTCTATTGTGAACGAGACCTCCGTGACTCTGGAGTGGCACTCCCCACGTGAGACGGGCGGCCGCGACGATGTCGTGTATAACATTATTTGTAAGAAATGCCAGACTGACCGTCGTTCTTGCTCTCATTGCGACGATAACGTGGAGTTCCAGCCCAGACAGCTGGGTCTGACCGATTCCAGAGTCTTCATCAGTAACCTGCTGGCACACACTCTCTACACCTTTGAGATCCAGGCGGTCAACGGCGTCACCAACAAGAGCCCGTATCCTGCCCAGCACGTCTCCATAGACATCACAACCAACCAGGCTGCTCCGTCCATTGTTCCCATAATGCATCAGGTCAGTTCGACGATGAAAAGCATCACGTTGTCATGGCCACAGCCTGAACAGCCCAATGGAATTATTCTCGATTATGAGCTGCGCTTCTATGAGAAGGAGCTGTCTGAGGAGAACTCCACGCAGGTGAGGAGTCAGACGAACACGGCTCGTGTGGATGGATTACGGCCGGGCACCATGTACGTGATGCAGGTTCGCGCCAGGACGGTTGCCGGTTTCGGCAAATACAGCAGCAAAATGTGCTTCCAAACCCTCACAGATGaCGACTATAAATCAGAGCTGAGGGAGCAGTTGCCACTGATTGCGGGCTCAGCCGCGGCTGGAGTGGTCTTCATTGTATCTCTGGTGGCCATATCTATAGTCTGTAGCAGGAAACGGGCTTACAATAAGGAGGCGGTGTACAGCGACAAACTCCAGCACTACAGCACCGGAAGAGAACTCACTTTGAGACCGGATTTGTCCAACTGTCACACACCCATGGGCTGCCCGACCCTGCCAGGCTCTCCGGGGATGAAGATCTACATCGACCCCTTCACCTATGAAGATCCTAATGAAGCCGTCAGAGAATTCGCCAAGGAAATAGACGTCTCCACTGTCAAGATTGAAGAGGTTATCGGAGCAGGTGAGTTCGGGGAGGTGTATAAAGGTCGACTGAAACTGCCTGGAAAACGAGAGATCTACGTTGCCATCAAAACACTGAAAGCAGGCTATTCTGAGAAGCAGAGACGCGACTTCCTGTCCGAGGCATCGATCATGGGGCAGTTTGACCACCCCAACATCATCCGCCTGGAGGGTGTCGTCACCAAGAGCCGGCCGGTCATGATCATCACAGAATTCATGGAGAACGGCGCGCTTGACTCCTTCCTTAGGCAAAATGATGGGCAGTTCACAGTAATCCAGTTGGTGGGGATGCTGAGGGGAATTGCTGCTGGCATGAAGTACCTGTCGGAGATGAATTACGTCCACCGAGACCTGGCCGCCCGCAACATCCTGGTCAACAGCAACCTTGTGTGCAAGGTGTCGGACTTCGGCCTGTCCCGTTATCTCCAGGAAGACACTTCTGACCCCACCTACACCAGCTCACTGGGTGGAAAGATCCCTGTGAGATGGACCTCACCGGAAGCAATCGCATACAGGAAGTTCACTTCTGCTAGTGACGTCTGGAGTTACGGTATTGTCATGTGGGAGGTCATGTCTTTTGGCGAGAGGCCCTACTGGGACATGAGCAACCAAGATgtgatCAATGCTATAGAGCAGGATTACAGGCTGCCGCCCCCCATGGACTGTCCCACTGCTCTGCACCAGCTGATGCTCGACTGCTGGCAGAAAGATCGGAACGCTCGGCCGCGCTTCACGGATATCGTCAATACTCTCGACAAACTCATCCGCAACCCCACCAGCCTTAAAGCAGTCGCCAGTATACCCACTATTCCGTCCCAGCCGTTGTTGGACCGGTCTATTCCAGACTTCACCACCTTTAGTTCTGTAGAGGACTGGCTGGCCGCCGTCAAGATGTCTCAGTACAGAGACAACTTCCTCAACTCTGGCTTCACGTCCCTACAGCTGGTCACCCAGATGACTTCAGAGGACCTGTTGAGGATAGGTGTAACCCTAGCCGGCCATCAGAAGAAAATCCTCAACAGCATTCAGTCCATGCACCTGCAGATGTCCCAGTGCCAAACGGGCACAGCGCTGGCATGACTGCAGGGGGCGCCGGACGACGGGCCGGGCAGCTTGCGGAAGAATTACCAGCGGGTGAGCCCAATCCCATCGGAGCGCGCCAGAATAGAGACTATCATCCTGATCTGAGAATGTGCTTCAGGAGAGGAACCATTACCCCATATCCAACAGACCAGATCGGAACAGGACGTCGGTTAACCCGTTTGTCTCCTGGGGTTACATTTACAGGGAAAACCAAAGAAGCGGACTCTTTTTGTCCTCTTCTCATCATTAATTTTCTTTACGATGTTTATCCAGAAATCACAGTGACTGCTCAGATTTCGAGACGTCTTCGAGACGCACGATTTTCTACAAGGTTGTTTCGttcatctttttttccatttattttttttcagtataaacCTTCTACCGTCACTGCTTCCCACTTACACTACCTGTCGATCTCGGTATGGCTGACGTTGCCAAAGGACATCCTGTATGCCTGCGTCCCATCCCTAGGCCATACGAGCTAAATGAtgtatatctttaaataaatacgaGTATATCTTCAGAGTAAACCTTCATATTGAAGGTGAAGTGTAACGGACCTGTATGTAAATACCCTCTTCTTCCGCTTGCATTTTTGGCAATGTTGCGCATTGGACAAGAACCGCCGATTCTGCAGGACACAAACTCGCTTACGTCAACGCGACGCCATGAGAACAATCTGGGATGAACTCTGACTCTGTCGATGTTGTGTAAATATCAGTTAGTTGTGTATAAACTAGCGTTAAAAAGATATACTTTAGATGAAAAAAGCTACGCATTCAGGCCACTAAACAGTGTTTATTGTAGGTGTTTCCACGCTGATGAGCACTTACGTGTACAGCTTTTCTTTCTTCCACCTCTTCTTCTACTTCTTCTAGTTGTTCTTGTTAGTTTCGTGTCAGAGTGTTTGAATGCGTCGACTAGCCTTGGGAAGGTGCATTATCACCACCTAAACTAGCTAGTACACTTAAATGTAGTTCCACTGTTAATAAGCTGTACTAATGTTGGTCTTACAGGGTCTTTAAAACCGCTAATCTGTTTCCAAGCACGTGTTTACATGATAAGCCAACGGAAAGGTCACAGGCAGGAAACGAAGAGACTCGCGAAACCGCTGCCCTTCACCACTTTTATCAGGCCGAGTCACTCTCCCGGCTCCAGATGCTTCTCGATGACATTGCTAAATGCGGTACATGTTCTTTCGTGTCATCAGCTCtccatttatttgtgtgtgtgtctggattGAACATCTGTGTGACCCTTTATGAACAGATGCCTAACGCCACCCCATTGAGCACATTCTACTTAAGCAGTCAGTTAAGCACtgggtaacacacacacacaaacacacactgttgATGGCTTTGGGCTGTTCGTTTTTGGTTGCCATGGAGAAATAGAATATgctaattgataataataaataataataataataataataatacattttaaatgatttattattattaacgtaATGGacagcttatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatagtcaatgTAGTTAAGAATTGGGAGCATGCCTAATCTgtgttttgcaaatattttgtcTTCTATGATAAAATCACTTGCAGCATTGATCATTCGTAAGTTGCTTTGAATATTAAAGggttgtaaatgaataaatataaaagtaattggTAAAATGTTCCTGCTTTTGGGGTCATAATGGCTAAAAGCAGCTCCACAGGATCTCAAAGGGTTTAGCATTAAAGGACCTCAATGTAGGATTTGAAACATAATGGTTTGCAGAGGTTAGCAGCTGCACCATTCATTCACctgatgtgaatgtgtgtgtaatgaataaGATGCTACATTGCCTGTAAGTTAATGAGACTCATGGTTTATGGTTATTCTCTatgagcaacacacacacacacgcacaatcCATCACGCAGCTATACCCTAGGTGTTGCACCTAATTGGCTACAATGAATTTCACCATGGCAACCAAAGAGCGTATTGGCTCTTTGTTAAGGGTGACACACTTTTACAGCTTCTGCCAAGAGGCATATTTTTTATgcgtgcgcacacacaaacCTCAACTGTACAACATTGAAGAAACAGTGAATCTGTTCCTCCATACGACGGTAGTAGCGATAATGTCTGGCTCTATAAAAGCTTCAGCGTGAGATGAAGACGTCTTCCCCTCTGTCTCTGCGTAAAGGAAGCTCAATTAATGATCACAAGGTATCGTCGCCATGGCCCGCGTCCAGCTCGTTCGCGGCGGGGCGTAACTAAGCTGTCCGGCGTCCTACCGTATGGCCCAGCTGAAAAATGGCTGACGTGCGCTCAAAGCCGTAGATCCGCTGGGGAGGGCGGAGCATGCTGGGATACCTGCGGGTACAGCACACAGACTGAGGAGAGTGATGAATGAGCTCGAGCGAGTcagagaatgaaagagaaaacaagagcAAGGAACGGCAGAGAGTGCAGGATTGAGAAAGAAATGAGGAGAAATGAGGaacgaagaaaaaaagaaatggacagACATTAGAGATTAGAGTATTAAGTCAGCATGAAATTACAAATTGACCCTATTTTCTTTGTAACGACATGATTCTTTCAACTTCTCTCCAACCACATGAGctattctcttttcttttcacagtCCAATCATGGTGGTTAAAATTAAGTCACATCATCATATTCGGTCTCATTTGTAATTACTGCATATTGAGGTGCAAAGGGTTGAAAATGgaatttcatgttgactttcaGGTATGTGTTGTTGAGAGATGGCTTATAGTATAAGAGCGGTTGACCAATATGCGTTTTAGAAATGGAAAATGCCAATATCTAGAACAGGgtagagtgttttttttgttttgttttttactaatTCTGTGTAATATTAATCATGACTTAAACGCTTATTAAACatagaaaacaattatattgGCATCTCCATTTTATACACAAAagctcaaaagtttggggtctctaagatttgtatatttctttaaaataaatgaataccgctattcagcaagggtgcatttaaatgaccaaaagtgacagttatctataaattataaattatttatattataattatttcctttcctttgcagTTTATATAACTGTAAAGGAAAGGAAATAATTTCTAAAGAACTATAGGCaactactgaaaattcagctttgctatcacacaaataaatgcatgtaaaatatattacattaaattataataactcTTCACAAAGTAATtatcttttactgtatttttgatcatgtAAATGCAGGCTTGGGGCCAAATTTACTAAACGGCAAATTAGCATTAAAGCTTAATTCCATAAAAGCGCTGAGGGGAAAATTCTGCTAGTGATTTGCTAACAATGCgcacattaaaatatacagaCCCAGGCATACCATTTCTAAAATGACCAGCACAATCTACTAAGAGCAGTGCAAATTATCATCCACTTTAAGACATGCCCTTTTTTGGCtctaaataatgtaaatacCAGTAAAGCTGGTAGTAAACATGGCCCTTGTTGAACAAATTTTACCGACCTCAAACATTTGTCCAGTGAAAAGCTTTAGATTTTTGGAATGCAATTTCTCTTAACCAGTCATGTGTACATGCAAAATGGACAATTAATCATCCTGATCAACAtatccatcatccatctatcaCAGGGTGTCTCAGATCTTGCTGTGGAGGGCCAATGCactgcaaagtttagctccaaccctgataaaactcacctacaTGTGATCCTGATCCTGAAGACACcgattagcatgctcaggtgtgtttgattagcgTTAGAGCTAAACTCAGCAGGAAAGTGGATCGGGGCCAGATTCGAGGACCCCTGACCTATCACTGTATAAAAAACACGTGACAGTTCTTCACCATCTGCGCAGACAGGTCGAAGCTTCATTATAACGCACACCCACACAGATAGTagtatatgatttatatttgaatatgtacATGAACGCTGTTGTTTCTATTGCGAatgtgtctctctttttcttattttaaccTCTCGTTTTGCACACGTCCAACAACTCAATCGAGGATAATCTTCATCTCTTGCAAGGgtatcctcctcttcctcctcctctcggAGGGTTGAGGGAATAGGCAGGGAGTGAGAGGATGAACGGAAATGATTTGAGTCTAATTTTATCGCTCTTTGCCTGGAGTGTCGACACATTGTGGAGTCTGGTGAGCGTTTGGCAGCGGATCAGCGGCGATGCTGTTCCCGTGCCAACTGAAGTCTGAGCGGTGCATGTGTTCACTAGCACGGCTCAGACTTCACAAGCGCAAACAAAAAGCGCGTTTGGAACAAACAAAAGCGTCGTCTGACACCGCCGGTAGAAACGAGCCCGTGTTTTGTATCGTACTTTCTGCTTTTCAAACCGCACTTTCATGTTAAAGTGTAGGAGCATTACTTTAGGCAACCGAAACTAAAAGCCAGAGAGTTCGAGGGTTCGAGAGACTGTTGATATTACTAGCATGGCATGGATACTAGCTCGCTCTGTTTTGTAGATAGCGAACGAAGGAAAGCCCCCCCTCACCTCACCGAGGCTGTATAGTTAACACTCGTTTCTTGTGATGAGTATGTCAGAGTTTGAAAATGTAACTTTCTGAGAACTATTGTACTGAAATGCACTCAATAAAGACCTTGGAAAAGCTGA

Function

symbol description
ephb1 Predicted to enable transmembrane-ephrin receptor activity. Predicted to be involved in axon guidance; positive regulation of kinase activity; and transmembrane receptor protein tyrosine kinase signaling pathway. Predicted to act upstream of or within protein phosphorylation. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be part of receptor complex. Predicted to be active in neuron projection. Predicted to be integral component of plasma membrane.

NR:

description
PREDICTED: ephrin type-B receptor 1

GO: NA

KEGG:

id description
K05110 EPHB1, ELK, NET; Eph receptor B1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043218532.1 True 7945 mRNA 0.46 16 22134354 22326172

Neighbor

gene id symbol gene type direction distance location
gpc1b gpc1b,LOC107660106,LOC107749182,LOC107730456,LOC107549820,LOC107600088,LOC107671591 coding upstream 29253 22044868 ~ 22105101 (+)
gpc5c gpc5c,LOC107749179,LOC107660087,LOC107671592,LOC107730460 coding upstream 108267 21929297 ~ 22026087 (+)
trnam-cau_1 NA coding upstream 205535 21928747 ~ 21928819 (+)
fndc7rs1 NA coding upstream 222685 21896676 ~ 21911669 (+)
nlrp1 NA coding upstream 307122 21818882 ~ 21827232 (+)
epb41l3b epb41l3b,epb41l3,LOC107689342,LOC107729731,LOC107750217,LOC108427206 coding downstream 189233 22515405 ~ 22549867 (+)
LOC122357060 NA coding downstream 236340 22562512 ~ 22572000 (+)
LOC122323627 NA coding downstream 266427 22592599 ~ 22601454 (+)
foxl2b LOC107574316,LOC107730743,LOC107683772,LOC107750224,LOC107549802,LOC107684570 coding downstream 312714 22638886 ~ 22640594 (+)
pnp5b pnp5b,LOC107730396,LOC107574318,LOC107750205,LOC107549813,LOC107684565 coding downstream 332892 22659064 ~ 22665912 (+)
G14484 LOC107568745 non-coding upstream 219326 21913520 ~ 21915028 (+)
G14477 NA non-coding upstream 238876 21895171 ~ 21895478 (+)
G14476 NA non-coding upstream 239223 21894608 ~ 21895131 (+)
LOC122359002 NA non-coding upstream 321451 21810929 ~ 21812903 (+)
G14316 NA non-coding upstream 413779 21719918 ~ 21720575 (+)
G14532 NA non-coding downstream 141688 22467860 ~ 22472603 (+)
G14535 NA non-coding downstream 149609 22475781 ~ 22476202 (+)
G14540 NA non-coding downstream 185999 22512171 ~ 22513937 (+)
G14541 NA non-coding downstream 196239 22522411 ~ 22586250 (+)
G14542 NA non-coding downstream 250851 22577023 ~ 22578223 (+)
fndc7a fndc7a,LOC107660526,LOC107671595,LOC107730461,LOC107568736 other upstream 266955 21857212 ~ 21867399 (+)
G14471 NA other upstream 272912 21860891 ~ 21861442 (+)
LOC122327294 aknad1,LOC107749213,LOC107660326,LOC107730428,LOC107671582 other upstream 281347 21843575 ~ 21853007 (+)
ccl20a.3 LOC107749165,LOC107660500,LOC107557866 other upstream 418064 21714683 ~ 21716290 (+)
ece2a ece2a,LOC107660439,LOC107600061,LOC107557862 other upstream 513257 21533245 ~ 21621097 (+)
LOC122327302 LOC107705949,LOC107599389,LOC107675701,LOC107737183,LOC107661566,LOC107586444,LOC107679834,LOC107719545,LOC107717972 other downstream 135744 22461916 ~ 22485655 (+)
LOC122327931 NA other downstream 307357 22633529 ~ 22674275 (+)
fcer1gl LOC107671799 other downstream 365027 22691199 ~ 22695330 (+)
LOC122324535 NA other downstream 676993 23003165 ~ 23005254 (+)
G14831 LOC107679389,LOC107745621,LOC107567694,LOC108428304 other downstream 1218934 23545106 ~ 23547974 (+)

Expression


Co-expression Network