XLOC_006632 (tial1)


Basic Information

Item Value
gene id XLOC_006632
gene name tial1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 25472005 ~ 25484752 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012800
GACTAGCCGGGTTCCGCCATTTTCTACTCAAGATTGAAAGTAACACCAGTCCTGTATTGTTCGTCCTAAAAATAAACCCCTTCTGAGAAACTGAAAACAGGTTTTGTTAGCACTCCTTCCGGCATCCAATAATGGAAGACGAGAGCCACCCAAAAACCCTCTATGTGGGGAATCTTTCAAGAGATGTAACGGAGAACTTGATCCTACAGTTATTTACTCAGATTGGGCCATGTAAAAGTTGTAAAATGATAACAGAGCATACAAGCAATGACCCGTATTGCTTTGTGGAGTTCTTTGAACATAGAGACGCTGCTGCGGCATTAGCTGCCATGAACGGAAGGAAGATTTTGGGAAAGgAAGTCAAGGTAAACTGGGCTACCACTCCGAGCAGTCAGAAGAAAGATACATCAAatcattttcatgtttttgtggGAGACTTGAGCCCTGAGATCACAACTGATGACATCAGAGCTGCATTTGCCCCCTTTGGGAAAATCTCGGATGCACGAGTGGTGAAGGATATGACAACAGGGAAATCAAAGGGGTATGGATTTGTGTCCTTCTATAACAAACTGGATGCTGAGAACGCCATAGTACACATGGGAGGTCAGTGGCTTGGTGGACGACAAATCCGGACTAACTGGGCAACTCGCAAACCACCCGCTCCAAAGAGTGTGCAAGACAATAGTGCCAAGCAGCTAAGATTTGATGAGGTGGTGAACCAGTCGAGTCCTCAGAACTGCACAGTTTACTGTGGTGGCATTCAGTCAGGACTCACAGAGCATCTCATGCGACAGACCTTTTCTCCTTTTGGCCAGATAATGGAGATCAGAGTGTTTCCAGAGAAGGGTTATTCTTTTATCAGGTTCTCTTCACATGAAAGTGCTGCTCATGCCATTGTCTCCGTGAATGGCACCACCATTGAAGGACATGTGGTGAAGTGCTACTGGGGCAAAGAATCTCCTGACATGGCCAAAAATGTCCAGCCGATGGAGTACGGTCAGTGGGGACAATGGAATCAAATGTATGGCAATCCGCAACAGTATGGTCAGTACATGACCAATGGCTGGCAAGTACCATCCTATGGAATGTACGGCCAAACATGGAATCAGCAAGGATTTGGTGTCGAACAATCACAGTCCCCTGCCTGGGTGGGAGGTTTTGGGACGCAACCCTCTCAGGCTCAGCCCGGTGCAGTGATGAACCAGGCTAACTTCGGCATGGCCGGATACCAGACACAGTGATCTGACCTTCCCTCTCCATAACAGCCGCTTCTTACTCCTGTACATCCTGCTCTCACAGGGAGAGAATCTGAAGACTCCTTACCCATACAGGCATATGGATCCCAAGCAGGAAACGCTTTATTGTAAAGATGCAAATTTAGAGTAAAGAAGCCAACAAGATGTGCGCCTTCACTGGAAATCTCAGTTCATTCACAAGATTCGATCCTGCTTTAGTTGAATTGGAGATGAAATGTGTCTCTTCCCCCaccctttttgttttttactgcaTATCTCAAAGAAAACTGCTGATTTTTCCCATTGAATCCCAACTTCAGGAACTCCACAGGTACATTACATGAAAATCCCACAACGTAAACAGTTTTCCCactatgtattttcttttttttccactcTTCCTTAATAACTGATCATGCATTTGCTTGTTCATTACAGTACGGACTTTGAATTttgtacaaaaacaaaacaaactgcgACAAAAAAATGCCATCAATTCTTCATTCTGACTTGGCAAAGGCACTTTTTGGGGGTTCACTGGACCCGTGTCTTGTAAATGTTGACGTGTAAATGAATTTCTATGTGCAGTGGTGTATATTTAATCCACATTAGCTCCCCGTTCTCCTCGGATTCTAGAGCTCTTTGATACTGTGTGTATAATGTATCTTTTTACTCCCAATTTACAGACAGTGAAATCTCCCGTTCACTACGGAGGAAGGGTCACGACGGCCAAACCTGTAAATATCTTTTGATATCTCGGCCTGGAAAAAGGGTTTCAGAAGCATGCGCTCTACTTGacaagacctttttttttttgtagaactaAAGCAGCGTATGTTAGACAAACGTTACATGTGTGACTGATATTTACAAGCCTTAATTTTTGCTCGGTCACACACAGATTTTCAGCTGAACACTTCGAGACCCTCATAGAGAGCTGTACGATTTATTTTAGATCCTACTGTACATTTGTCCctttgctgtttttaaaaatatgcgtgccatttttttttttcgagtaGCCAGAGAAAAGGTTTGGATTTTTggtttggattttttgttttcttcCCTTTGGGAATGTTGAGAAATTGCATGTTTCAAACCATAATATTGAGGTTGCTCAAAGCATTGAATGTAAAAGGCAGAAATGTTTGAATACAACTTAGCATTTTGAGTTTTCTTTTTAGGTCTAAATGAGTCAATAAATGAACCATTGGACAAGAA
>TCONS_00012801
GTTTCTATTTATACAAATGAACCTATGAAAGACTAGTAGTGTTGCTGAGAGCTTATGTTTTTGCTTTAcatttatgtgtgtttgtaaatCTGTTGTTTCTTCTTTTTTAGGATGCTGAGAACGCCATAGTACACATGGGAGGTCAGTGGCTTGGTGGACGACAAATCCGGACTAACTGGGCAACTCGCAAACCACCCGCTCCAAAGAGTGTGCAAGACAATAGTGCCAAGCAGCTAAGATTTGATGAGGTGGTGAACCAGTCGAGTCCTCAGAACTGCACAGTTTACTGTGGTGGCATTCAGTCAGGACTCACAGAGCATCTCATGCGACAGACCTTTTCTCCTTTTGGCCAGATAATGGAGATCAGAGTGTTTCCAGAGAAGGGTTATTCTTTTATCAGGTTCTCTTCACATGAAAGTGCTGCTCATGCCATTGTCTCCGTGAATGGCACCACCATTGAAGGACATGTGGTGAAGTGCTACTGGGGCAAAGAATCTCCTGACATGGCCAAAAATGTCCAGCCGATGGAGTACGGTCAGTGGGGACAATGGAATCAAATGTATGGCAATCCGCAACAGTATGGTCAGTACATGACCAATGGCTGGCAAGTACCATCCTATGGAATGTACGGCCAAACATGGAATCAGCAAGGATTTGGTGTCGAACAATCACAGTCCCCTGCCTGGGTGGGAGGTTTTGGGACGCAACCCTCTCAGGCTCAGCCCGGTGCAGTGATGAACCAGGCTAACTTCGGCATGGCCGGATACCAGACACAGTGATCTGACCTTCCCTCTCC
>TCONS_00012802
AAAACAGGTTTTGTTAGCACTCCTTCCGGCATCCAATAATGGAAGACGAGAGCCACCCAAAAACCCTCTATGTGGGGAATCTTTCAAGAGATGTAACGGAGAACTTGATCCTACAGTTATTTACTCAGATTGGGCCATGTAAAAGTTGTAAAATGATAACAGAGCAGTCTGATAGCAGCAGGAAGATGAACTCTTCTTCTATTGGATTTTCTGTTTTGCAGCATACAAGCAATGACCCGTATTGCTTTGTGGAGTTCTTTGAACATAGAGACGCTGCTGCGGCATTAGCTGCCATGAACGGAAGGAAGATTTTGGGAAAGgAAGTCAAGGTAAACTGGGCTACCACTCCGAGCAGTCAGAAGAAAGATACATCAAatcattttcatgtttttgtggGAGACTTGAGCCCTGAGATCACAACTGATGACATCAGAGCTGCATTTGCCCCCTTTGGGAAAATCTCGGATGCACGAGTGGTGAAGGATATGACAACAGGGAAATCAAAGGGGTATGGATTTGTGTCCTTCTATAACAAACTGGATGCTGAGAACGCCATAGTACACATGGGAGGTCAGTGGCTTGGTGGACGACAAATCCGGACTAACTGGGCAACTCGCAAACCACCCGCTCCAAAGAGTGTGCAAGACAATAGTGCCAAGCAGCTAAGATTTGATGAGGTGGTGAACCAGTCGAGTCCTCAGAACTGCACAGTTTACTGTGGTGGCATTCAGTCAGGACTCACAGAGCATCTCATGCGACAGACCTTTTCTCCTTTTGGCCAGATAATGGAGATCAGAGTGTTTCCAGAGAAGGGTTATTCTTTTATCAGGTTCTCTTCACATGAAAGTGCTGCTCATGCCATTGTCTCCGTGAATGGCACCACCATTGAAGGACATGTGGTGAAGTGCTACTGGGGCAAAGAATCTCCTGACATGGCCAAAAATGTCCAGCCGATGGAGTACGGTCAGTGGGGACAATGGAATCAAATGTATGGCAATCCGCAACAGTATGGTCAGTACATGACCAATGGCTGGCAAGTACCATCCTATGGAATGTACGGCCAAACATGGAATCAGCAAGGATTTGGTGTCGAACAATCACAGTCCCCTGCCTGGGTGGGAGGTTTTGGGACGCAACCCTCTCAGGCTCAGCCCGGTGCAGTGATGAACCAGGCTAACTTCGGCATGGCCGGATACCAGACACAGTGA
>TCONS_00012803
GTTGGatctaaactatgcagaacaccTGCCATCCAGGTccagATAGTGCCAAGCAGCTAAGATTTGATGAGGTGGTGAACCAGTCGAGTCCTCAGAACTGCACAGTTTACTGTGGTGGCATTCAGTCAGGACTCACAGAGCATCTCATGCGACAGACCTTTTCTCCTTTTGGCCAGATAATGGAGATCAGAGTGTTTCCAGAGAAGGGTTATTCTTTTATCAGGTTCTCTTCACATGAAAGTGCTGCTCATGCCATTGTCTCCGTGAATGGCACCACCATTGAAGGACATGTGGTGAAGTGCTACTGGGGCAAAGAATCTCCTGACATGGCCAAAAATGTCCAGCCGATGGAGTACGGTCAGTGGGGACAATGGAATCAAATGTATGGCAATCCGCAACAGTATGGTCA
>TCONS_00012804
TTTTCTACTCAAGATTGAAAGTAACACCAGTCCTGTATTGTTCGTCCTAAAAATAAACCCCTTCTGAGAAACTGAAAACAGGTTTTGTTAGCACTCCTTCCGGCATCCAATAATGGAAGACGAGAGCCACCCAAAAACCCTCTATGTGGGGAATCTTTCAAGAGATGTAACGGAGAACTTGATCCTACAGTTATTTACTCAGATTGGGCCATGTAAAAGTTGTAAAATGATAACAGAGCAGTCTGATAGCAGCAGGAAGATGAACTCTTCTTCTATTGGATTTTCTGTTTTGCAGCATACAAGCAATGACCCGTATTGCTTTGTGGAGTTCTTTGAACATAGAGACGCTGCTGCGGCATTAGCTGCCATGAACGGAAGGAAGATTTTGGGAAAGgAAGTCAAGGTAAACTGGGCTACCACTCCGAGCAGTCAGAAGAAAGATACATCAAatcattttcatgtttttgtggGAGACTTGAGCCCTGAGATCACAACTGATGACATCAGAGCTGCATTTGCCCCCTTTGGGAAAATCTCGTAAGTTTTAAGAGGTCACACCCTTCTTGTCTGCATAATGTAGAGTGGTGTGTGTTTACACTAAGCCAGATGACctttatatgtaattttttaaCCTTTGCATTCTTTAAACATTTCTGTCAGTAATGAAAGCTTTTTTCTCCTTTATATTAAACATCAATGTTTATAGTTTTAAACTTACAGATTTGAATTGAGAACAGGATGTCATATAGTTTTAGAAACCGtatatttttaatttgcattGGTGATTTTAATGGTCAGTGTCATGAG

Function

symbol description
tial1 Predicted to enable DNA binding activity and RNA binding activity. Orthologous to human TIAL1 (TIA1 cytotoxic granule associated RNA binding protein like 1).

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03019 Messenger RNA biogenesis
ko03041 Spliceosome

ZFIN:

id description
ZDB-GENE-040426-1547 Predicted to enable DNA binding activity and RNA binding activity. Orthologous to human TIAL1 (TIA1 cytotoxic granule associated RNA binding protein like 1).

Ensembl:

ensembl_id ENSDARG00000009525

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012800 False 2462 mRNA 0.43 12 25472005 25484752
TCONS_00012801 False 796 lncRNA 0.48 6 25473206 25477370
TCONS_00012802 False 1208 mRNA 0.47 12 25473223 25484659
TCONS_00012803 False 409 mRNA 0.48 5 25474029 25476920
TCONS_00012804 True 807 lncRNA 0.38 5 25478646 25484733

Neighbor

gene id symbol gene type direction distance location
XLOC_006631 itprip coding downstream 63618 25403413 ~ 25408387 (-)
XLOC_006630 plaua coding downstream 166826 25297257 ~ 25305179 (-)
XLOC_006629 NA coding downstream 187289 25210158 ~ 25284716 (-)
XLOC_006628 adka coding downstream 272745 24918096 ~ 25199260 (-)
XLOC_006627 kat6b coding downstream 565698 24881272 ~ 24906307 (-)
XLOC_006633 BX005252.1 coding upstream 45782 25530534 ~ 25530648 (-)
XLOC_006634 mcmbp coding upstream 46252 25531004 ~ 25548882 (-)
XLOC_006635 csgalnact2 coding upstream 85079 25569831 ~ 25581303 (-)
XLOC_006636 ret coding upstream 99804 25584556 ~ 25632756 (-)
XLOC_006637 si:dkey-192p21.6 coding upstream 157298 25642050 ~ 25720907 (-)
XLOC_006471 BX537274.2 misc downstream 15207100 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 24645780 825904 ~ 826225 (-)
XLOC_006619 NA non-coding downstream 848780 24590420 ~ 24623225 (-)
XLOC_006620 AL831745.2 non-coding downstream 865378 24602410 ~ 24606627 (-)
XLOC_006618 AL831745.1 non-coding downstream 883785 24585224 ~ 24588220 (-)
XLOC_006617 NA non-coding downstream 893983 24577265 ~ 24578022 (-)
XLOC_006640 NA non-coding upstream 291637 25776389 ~ 25778815 (-)
XLOC_006643 NA non-coding upstream 361780 25846532 ~ 25853311 (-)
XLOC_006644 NA non-coding upstream 524745 26009497 ~ 26703804 (-)
XLOC_006645 NA non-coding upstream 1048602 26533354 ~ 26544816 (-)

Expression


Co-expression Network