mbd3a (mbd3,LOC107713415,LOC107696467,LOC107552695,LOC108427158,LOC107724987)


Basic Information

Item Value
gene id mbd3a
gene name mbd3,LOC107713415,LOC107696467,LOC107552695,LOC108427158,LOC107724987
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 23005897 ~ 23016480 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043219030.1
CATGACTCGTGAATCAGAAGGTCGCGAGGTGAGAGGATAGAGCAGCGCCAGCGGCCGCCTTTAACCCTAAACATTCACAGCTTTTCCTCCAGAGAGACTCCGGGAGAAACATGGAGAGGAAAAGGTGGGAGTGCTCGGCTCTCCCAAATGGTTGGAAAAGGGAAGAAGTGACCAGAAAGTCGGGCTTGTCCGCGGGGAAAAGTGATGTCTATTATTTTAGTCCAACAGGGAAGAAGTTTCGGAGTAAACCGCAGCTGGCCCGATATCTGGGAAACTCCATGGATCTCAGCTCCTTTGATTTCCGCACAGGGAAGATGCTAATGAGcaagctgaataaaaacaggCAGCGGATCCGCTACGATCACAGTCAGAGCAAGGGTAAACCTGATCTGAACACGTCACTGCCGGTCCGACAGACGGCGTCCATCTTCAAGCAGCCTGTCACCAAGGTCACGAATCACCCCAGCAACAAGGTCAAGACGGACCCTCAGAAAGCTGTGGACCAGCCCAGACAGCTGTTTTGGGAGAAAAAGCTGAGCGGACTCAACACTTACGACATCGCAGAGGAGCTGGTGAAGACCATGGATCTCCCGAAAGGATTGCAAGGTGTGGGCCCGGGGTACACGGATAAGACGCTGCTCTCGGCTCTAGCGAGCGCCCTTCACACCAGCTCGGCTCCCATCAGCGGTCAGCTGTCCGCCGCCGTGGAGAAGAACCCCGGGGTCTGGCTCAACACCACACAGCCTCTGTGCAAAGCCTTCATGGTGACGGACGAAGACATCAGGAAGCAGGAAGATCTGGTGTACAGCGTGAGGAAGAGGCTGGAGGAAGCGCTCATGGCGGACATGCTCGCACACATAGAAGAAGCTACCATCGAGGCCAAAGCTCTGAAGGAAGAGTCCAACGACGAGGAAACGGAATCCCTATAGCTgaaaGCGGTGGTGATGTTAAAGACCCGGACCACAGTATATTTCTCCCCAAACCCAAAGACGCACTCAGACTCGGACGTGAGCTGATTCTATGCAGAAACCAGCCGCTCTCCTGCCTTTCTCCTCCAGCTGTGTTTTAACGTAACATTTCAagcaattttataaaatcaaattcACTTTTTCTCCCCTACCTTTAACCGGTTTGTAGTggattttctctatttttgtaCAGCACGAGCTTCAAGTTCTGGGTTTGGTTTTTGCAGCATAACGCAGTCTGAGTGACTTACAGACGCcgaggttttattttttattcagatatCTTAAGCTAATCTCAAATCATGaacgtttttggttttttttttttacacaaatgaaatcccatgttttttatgattatggAAATAACGCACACTTAGTGCATACTGGTTTCGATGGCTGGTGCTCAGTTCTTTTGTTACTGTGCTGTTTAAGCTCTTACGATGGTGCTTAGGGTTTTGTATTCATGAATTAGTCGATGCATAGCTGATATTCATTAAGAAATGGACAGTTTATCAATATTTCTGGAGTCATTTTTCAGTTCTTTTTGTGAAGCTGGTATGTTAGTCATCCTTCACCGATGCAGtgtggtttattattattattattattattattattgttgttattatggACTGAATGGTTACAGTACAGAAATCTGTGTGATGCATCAGTGTTTGTTCACTAGACGGCTTGTTTTTACACTAATTCTTCCCACACCCATGATTGAATATAATACATCGActcatttctttcttccttcaCAAGCATTGTACAGTCATATTTGAAATATGCAGGAGAGGTGTTTTCGTATGTTGCCCTTTATTTGCAAGAGCGTGGATcactttttgaaaatgcaaaccTTGTAGCTGAAGGACACGTAATTTTATAAACTGggaaaataaaagtctttcaaCACA
>XM_043219036.1
CTGCGAGTCGACTCTCGGTTCACGGCGAGTCATGACTCGTGAATCAGAAGGTCGCGAGGTGAGAGGATAGAGCAGCGCCAGCGGCCGCCTTTAACCCTAAACATTCACAGCTTTTCCTCCAGAGAGACTCCGGGAGAAACATGGAGAGGAAAAGTCCAACAGGGAAGAAGTTTCGGAGTAAACCGCAGCTGGCCCGATATCTGGGAAACTCCATGGATCTCAGCTCCTTTGATTTCCGCACAGGGAAGATGCTAATGAGcaagctgaataaaaacaggCAGCGGATCCGCTACGATCACAGTCAGAGCAAGGGTAAACCTGATCTGAACACGTCACTGCCGGTCCGACAGACGGCGTCCATCTTCAAGCAGCCTGTCACCAAGGTCACGAATCACCCCAGCAACAAGGTCAAGACGGACCCTCAGAAAGCTGTGGACCAGCCCAGACAGCTGTTTTGGGAGAAAAAGCTGAGCGGACTCAACACTTACGACATCGCAGAGGAGCTGGTGAAGACCATGGATCTCCCGAAAGGATTGCAAGGTGTGGGCCCGGGGTACACGGATAAGACGCTGCTCTCGGCTCTAGCGAGCGCCCTTCACACCAGCTCGGCTCCCATCAGCGGTCAGCTGTCCGCCGCCGTGGAGAAGAACCCCGGGGTCTGGCTCAACACCACACAGCCTCTGTGCAAAGCCTTCATGGTGACGGACGAAGACATCAGGAAGCAGGAAGATCTGGTGTACAGCGTGAGGAAGAGGCTGGAGGAAGCGCTCATGGCGGACATGCTCGCACACATAGAAGAAGCTACCATCGAGGCCAAAGCTCTGAAGGAAGAGTCCAACGACGAGGAAACGGAATCCCTATAGCTgaaaGCGGTGGTGATGTTAAAGACCCGGACCACAGTATATTTCTCCCCAAACCCAAAGACGCACTCAGACTCGGACGTGAGCTGATTCTATGCAGAAACCAGCCGCTCTCCTGCCTTTCTCCTCCAGCTGTGTTTTAACGTAACATTTCAagcaattttataaaatcaaattcACTTTTTCTCCCCTACCTTTAACCGGTTTGTAGTggattttctctatttttgtaCAGCACGAGCTTCAAGTTCTGGGTTTGGTTTTTGCAGCATAACGCAGTCTGAGTGACTTACAGACGCcgaggttttattttttattcagatatCTTAAGCTAATCTCAAATCATGaacgtttttggttttttttttttacacaaatgaaatcccatgttttttatgattatggAAATAACGCACACTTAGTGCATACTGGTTTCGATGGCTGGTGCTCAGTTCTTTTGTTACTGTGCTGTTTAAGCTCTTACGATGGTGCTTAGGGTTTTGTATTCATGAATTAGTCGATGCATAGCTGATATTCATTAAGAAATGGACAGTTTATCAATATTTCTGGAGTCATTTTTCAGTTCTTTTTGTGAAGCTGGTATGTTAGTCATCCTTCACCGATGCAGtgtggtttattattattattattattattattattgttgttattatggACTGAATGGTTACAGTACAGAAATCTGTGTGATGCATCAGTGTTTGTTCACTAGACGGCTTGTTTTTACACTAATTCTTCCCACACCCATGATTGAATATAATACATCGActcatttctttcttccttcaCAAGCATTGTACAGTCATATTTGAAATATGCAGGAGAGGTGTTTTCGTATGTTGCCCTTTATTTGCAAGAGCGTGGATcactttttgaaaatgcaaaccTTGTAGCTGAAGGACACGTAATTTTATAAACTGggaaaataaaagtctttcaaCACA

Function

symbol description
mbd3 Enables methyl-CpG binding activity. Contributes to nucleosomal DNA binding activity. Involved in chromatin remodeling. Located in chromatin. Part of protein-containing complex.

NR:

description
PREDICTED: methyl-CpG-binding domain protein 3

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function

KEGG:

id description
K11591 MBD3; methyl-CpG-binding domain protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043219030.1 True 1888 mRNA 0.46 7 23005927 23016480
XM_043219036.1 False 1822 mRNA 0.46 7 23005897 23016480

Neighbor

gene id symbol gene type direction distance location
tcf3a LOC107671808,LOC107696481,LOC107724980,LOC107552693 coding upstream 7381 22958986 ~ 22998516 (+)
map2k2b map2k2b,LOC107671813,LOC107726325,LOC107696522,LOC108427153 coding upstream 59039 22938787 ~ 22946858 (+)
pias4b NA coding upstream 68069 22926313 ~ 22937828 (+)
LOC122328301 LOC107696585,LOC107552683,LOC107724989,LOC107549819,LOC107671817,LOC100151059,LOC108427150 coding upstream 134925 22833068 ~ 22870972 (+)
sf3a2 sf3a2,LOC107726326,LOC107696543,LOC107671791,LOC107750226 coding upstream 221051 22780823 ~ 22784846 (+)
LOC122325295 mex3d,LOC107552694,LOC107713414,LOC107724985,LOC107696452,LOC107596262 coding downstream 1877 23018357 ~ 23025395 (+)
LOC122327352 LOC107572994,LOC107569272 coding downstream 233712 23250192 ~ 23260474 (+)
wu:fb63a08 LOC107749217,LOC107572082,LOC107660374 coding downstream 408214 23424694 ~ 23442701 (+)
scg2b LOC107552496,LOC107552495,LOC107660152,LOC107738796 coding downstream 514290 23530770 ~ 23533357 (+)
mbnl1 mbnl1,LOC107724811,LOC107573627,LOC107745615,LOC107679403,LOC107567699 coding downstream 547284 23563764 ~ 23624866 (+)
G14589 NA non-coding upstream 126432 22847913 ~ 22879465 (+)
LOC122328317 NA non-coding upstream 176352 22813266 ~ 22829545 (+)
LOC122357472 NA non-coding upstream 203424 22786721 ~ 22802473 (+)
G14578 NA non-coding upstream 219884 22742427 ~ 22786013 (+)
G14605 NA non-coding downstream 10300 23026780 ~ 23028239 (+)
G14607 NA non-coding downstream 12687 23029167 ~ 23029879 (+)
G14611 NA non-coding downstream 30153 23046633 ~ 23049972 (+)
G14772 NA non-coding downstream 141618 23158098 ~ 23179131 (+)
G14778 NA non-coding downstream 162965 23179445 ~ 23179755 (+)
LOC122324535 NA other upstream 643 23003165 ~ 23005254 (+)
fcer1gl LOC107671799 other upstream 310567 22691199 ~ 22695330 (+)
LOC122327931 NA other upstream 331622 22633529 ~ 22674275 (+)
LOC122327302 LOC107705949,LOC107599389,LOC107675701,LOC107737183,LOC107661566,LOC107586444,LOC107679834,LOC107719545,LOC107717972 other upstream 520242 22461916 ~ 22485655 (+)
fndc7a fndc7a,LOC107660526,LOC107671595,LOC107730461,LOC107568736 other upstream 1138498 21857212 ~ 21867399 (+)
G14831 LOC107679389,LOC107745621,LOC107567694,LOC108428304 other downstream 528626 23545106 ~ 23547974 (+)
LOC122323670 NA other downstream 919441 23935921 ~ 23939016 (+)
LOC122327416 LOC107728372,LOC107569261,LOC107681443 other downstream 1029205 24045685 ~ 24048465 (+)
LOC122327425 LOC107728372,LOC107569261,LOC107681443 other downstream 1042932 24059412 ~ 24062202 (+)
LOC122327442 LOC107549368,LOC107569260,LOC107737397,LOC107681447,LOC107681444 other downstream 1067358 24083838 ~ 24096897 (+)

Expression


Co-expression Network