rnf2 (rnf2,LOC107718134,LOC107564705,LOC107693737,LOC107677769)


Basic Information

Item Value
gene id rnf2
gene name rnf2,LOC107718134,LOC107564705,LOC107693737,LOC107677769
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 9776067 ~ 9780623 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043219062.1
AGTTCATTTAGGCCCACCGAATCCGCCATATTGAGCGCAGCAGAACGCGCTGGCAGGGAGAGAGTGTTCATAACATTGAGATAGGTGAAGGACACTGTGTATAAAGATGACGCAAACGGTCCAAACAAACGGGGTTCAACCCCTCAGTAAGACCTGGGAGCTCAGTCTCTATGAATTACAGAGAACTCCACAgGAGGCCATCACGGATGGTCTGGAGATTGCGGTGTCCCCACGCAGCTTGCACAGTGAGCTGATGTGTCCTATCTGTCTGGACATGCTGAAGAACACCATGACCACCAAGGAGTGCCTGCACCGATTCTGTGCCGACTGCATCATCACTGCGCTCAGATCGGGGAACAAGGAGTGTCCAACATGCCGGAAGAAGCTGGTTTCTAAGCGCTCCCTCCGTCCAGACCCTAACTTTGACGCCTTGATCAGTAAGATCTACCCCAGCAGAGACGAGTACGAAGCCCACCAGGAGAGAGTGTTGGCCCGCATCAGCAAGCACAACAACCAGCAGGCGCTCAGCCACAGTATTGAGGAGGGCCTAAAAATCCAGGCCATGAACAGACTGCAACGGGGGAAGAAGCACCAAATTGAAAATGGCAGTGGGGCAGAGGACAATGGGGACAGTTCACATTGCAGCAATGCTTCAGTGCACAGTAACCAAGAGGCCGGACCCAGCATCAAACGAACCAAAACCTCTGACGATTCGGGACTGGACATGGACAATGCCACAGAGAACGGAGGAGGAGACTTGGCTCTGGACGGGGCCAGCGAGATAGAGCTGGTGTTCCGCCCTCACCCGACGCTGATGGAGAAAGAAGACGCCGCGCAGACGAGGTACATTAAAACTTCGGGGAACGCCACGGTGGACCACCTCTCCAAATACTTGGCTGTCAGATTGGCTTTGGAGGAAATGCGCAAGAACGGAGAGGCAAGCCCTATCAACGTAGAGGCAGCCAGCGAAAAACAGTACACCATCTACATCCCTACACCAAACAACCAGTTCACAGTCTTGAAtggctctttctctctggaACTGGTGAGCGAGAAGTACTGGAAAGTCAATAAGCCCATGGAGTTGTACTTTGCCCCAACAAAGGAGCACAAATAAATCCAGCGACGACATGGGGGTCTGAGCTGGCCCAGGACAGACTGATGGTTcatcctctcttctctctccctgtttctttctgtctttctctcgctGTTCCTCCTCGTCTGGAGTATACTAGTCTCTGGAGCCCCAGCTCCTCAATAACTGTGGctgctttgatttgttttgttttttttattgtctttttgtatggaaaaaagACCAGGGTGGATCATTGGGAATGGGGTGGGAGGGCCTTGGAAGTCAAACcagtgtggatttttttttttttttcccctcccccTTTCAGTTGACACAATCATTTCATTGTTACATGTTGAGTCCTTTTTGAGTCAAGAGGACTCAGACGTTGCCTTCAACAAGCCAAAATTTTAGTCTACAACATGGATAACGCATCCGTAACACCATGAGGAAATCACGCTGAGTGCTTCACGAAAGACTCTCTCAGAAGGTGGCTTTTGTAGCCAATGGCGCTGTCCTTTAATATCAGACTTGACCAGTGATGTTCGCAGAGCTGTAAGagattttaagtgcattttcagACACACCTCTCCTGTAGCAGCAACATTCGTTCACTAACATGACTGCATCTTGCCACTGTGTACCAGTACAATGTGACGGCTTAGTTCACATGACGCCGTCATGTCACTAGTCTGTACTACTGTGTTGGTCGTCAGATGTTTCGGGGATTGTACATATTACATCACTTTATAGAATAACTACCTGGAAAATGTATATTGACACCATTGTTACAGTTATTACAGTACCGTTTCATAAAAACATGAGTTGGCAGTTGTACATTTGGACCcagtttttaatagtttcataGACTCTTCATCTAAGACTTTTTAGAGCATGAAGTATTTTAGTTTGACATTCTTGGCATACATTTGAGTTCAATGTtgttgtttggaaaaaaaaaatgtatacagcgTTCTttgtttggaaaataaataaaaaaatgtatgcaga
>XM_043219071.1
AGTATGTAAACAGCTGCGGTTTTGCGGAAATATATGCTTTGTGGTTGTCGATGTTGGCGTTTTCTTTAGCGTAAAAGAGGTGAAGGACACTGTGTATAAAGATGACGCAAACGGTCCAAACAAACGGGGTTCAACCCCTCAGTAAGACCTGGGAGCTCAGTCTCTATGAATTACAGAGAACTCCACAgGAGGCCATCACGGATGGTCTGGAGATTGCGGTGTCCCCACGCAGCTTGCACAGTGAGCTGATGTGTCCTATCTGTCTGGACATGCTGAAGAACACCATGACCACCAAGGAGTGCCTGCACCGATTCTGTGCCGACTGCATCATCACTGCGCTCAGATCGGGGAACAAGGAGTGTCCAACATGCCGGAAGAAGCTGGTTTCTAAGCGCTCCCTCCGTCCAGACCCTAACTTTGACGCCTTGATCAGTAAGATCTACCCCAGCAGAGACGAGTACGAAGCCCACCAGGAGAGAGTGTTGGCCCGCATCAGCAAGCACAACAACCAGCAGGCGCTCAGCCACAGTATTGAGGAGGGCCTAAAAATCCAGGCCATGAACAGACTGCAACGGGGGAAGAAGCACCAAATTGAAAATGGCAGTGGGGCAGAGGACAATGGGGACAGTTCACATTGCAGCAATGCTTCAGTGCACAGTAACCAAGAGGCCGGACCCAGCATCAAACGAACCAAAACCTCTGACGATTCGGGACTGGACATGGACAATGCCACAGAGAACGGAGGAGGAGACTTGGCTCTGGACGGGGCCAGCGAGATAGAGCTGGTGTTCCGCCCTCACCCGACGCTGATGGAGAAAGAAGACGCCGCGCAGACGAGGTACATTAAAACTTCGGGGAACGCCACGGTGGACCACCTCTCCAAATACTTGGCTGTCAGATTGGCTTTGGAGGAAATGCGCAAGAACGGAGAGGCAAGCCCTATCAACGTAGAGGCAGCCAGCGAAAAACAGTACACCATCTACATCCCTACACCAAACAACCAGTTCACAGTCTTGAAtggctctttctctctggaACTGGTGAGCGAGAAGTACTGGAAAGTCAATAAGCCCATGGAGTTGTACTTTGCCCCAACAAAGGAGCACAAATAAATCCAGCGACGACATGGGGGTCTGAGCTGGCCCAGGACAGACTGATGGTTcatcctctcttctctctccctgtttctttctgtctttctctcgctGTTCCTCCTCGTCTGGAGTATACTAGTCTCTGGAGCCCCAGCTCCTCAATAACTGTGGctgctttgatttgttttgttttttttattgtctttttgtatggaaaaaagACCAGGGTGGATCATTGGGAATGGGGTGGGAGGGCCTTGGAAGTCAAACcagtgtggatttttttttttttttcccctcccccTTTCAGTTGACACAATCATTTCATTGTTACATGTTGAGTCCTTTTTGAGTCAAGAGGACTCAGACGTTGCCTTCAACAAGCCAAAATTTTAGTCTACAACATGGATAACGCATCCGTAACACCATGAGGAAATCACGCTGAGTGCTTCACGAAAGACTCTCTCAGAAGGTGGCTTTTGTAGCCAATGGCGCTGTCCTTTAATATCAGACTTGACCAGTGATGTTCGCAGAGCTGTAAGagattttaagtgcattttcagACACACCTCTCCTGTAGCAGCAACATTCGTTCACTAACATGACTGCATCTTGCCACTGTGTACCAGTACAATGTGACGGCTTAGTTCACATGACGCCGTCATGTCACTAGTCTGTACTACTGTGTTGGTCGTCAGATGTTTCGGGGATTGTACATATTACATCACTTTATAGAATAACTACCTGGAAAATGTATATTGACACCATTGTTACAGTTATTACAGTACCGTTTCATAAAAACATGAGTTGGCAGTTGTACATTTGGACCcagtttttaatagtttcataGACTCTTCATCTAAGACTTTTTAGAGCATGAAGTATTTTAGTTTGACATTCTTGGCATACATTTGAGTTCAATGTtgttgtttggaaaaaaaaaatgtatacagcgTTCTttgtttggaaaataaataaaaaaatgtatgcaga

Function

symbol description
rnf2 Predicted to enable chromatin binding activity and ubiquitin protein ligase activity. Acts upstream of or within several processes, including animal organ morphogenesis; negative regulation of intrinsic apoptotic signaling pathway by p53 class mediator; and pectoral fin development. Predicted to be located in nuclear body. Predicted to be part of MLL1 complex and PRC1 complex. Is expressed in brain; eye; gonad; muscle; and pectoral fin. Orthologous to human RNF2 (ring finger protein 2).

NR:

description
PREDICTED: E3 ubiquitin-protein ligase RING2 isoform X1

GO:

id name namespace
GO:0036353 histone H2A-K119 monoubiquitination biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0009948 anterior/posterior axis specification biological_process
GO:0033339 pectoral fin development biological_process
GO:0060042 retina morphogenesis in camera-type eye biological_process
GO:1902254 negative regulation of intrinsic apoptotic signaling pathway by p53 class mediator biological_process
GO:0000278 mitotic cell cycle biological_process
GO:0071339 MLL1 complex cellular_component
GO:0035102 PRC1 complex cellular_component
GO:0016604 nuclear body cellular_component
GO:0003682 chromatin binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0016874 ligase activity molecular_function

KEGG:

id description
K10695 RNF1_2; E3 ubiquitin-protein ligase RNF1/2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043219062.1 True 2092 mRNA 0.47 7 9776067 9780623
XM_043219071.1 False 2087 mRNA 0.47 7 9776067 9780538

Neighbor

gene id symbol gene type direction distance location
ptgs2a ptgs2a,LOC107594645,LOC107722606,LOC107693741,LOC107677761,LOC107718138,LOC107589869 coding downstream 46127 9726647 ~ 9729940 (-)
pdca pdca,LOC107594646,LOC107722648,LOC107693745,LOC107589870,LOC107677764 coding downstream 62507 9710793 ~ 9713560 (-)
tpra tpra,LOC107693743,LOC107722541,LOC107718142,LOC107589873,LOC107677758 coding downstream 73860 9681973 ~ 9702207 (-)
dusp12 dusp12,LOC107722526,LOC107589915,LOC107677752,LOC107718184,LOC107693747 coding downstream 124820 9648808 ~ 9651247 (-)
frrs1a LOC107693701,LOC107722512,LOC107594678 coding downstream 198318 9570591 ~ 9577749 (-)
kifap3b kifap3b,LOC107564707,LOC107693735,LOC107718166,LOC108444490 coding upstream 24406 9805029 ~ 9830206 (-)
mfsd12a mfsd12a,LOC107693733,LOC107722641,LOC107564710,LOC107691677,LOC107718130,LOC107589862 coding upstream 91590 9872213 ~ 9879088 (-)
csnk1g2a csnk1g2,csnk1g2a,LOC107722536,LOC107718129,LOC107589861,LOC107691647,LOC107693732,LOC106925954 coding upstream 99818 9880441 ~ 9896499 (-)
mknk2a mknk2a,LOC107693729,LOC107722535,LOC107564711,LOC107718128,LOC107589858,LOC107691640,LOC108432510 coding upstream 119294 9899917 ~ 9910873 (-)
amotl2b LOC107693726,LOC107722615,LOC107691578,LOC107718124,LOC107589855,LOC107564722 coding upstream 185813 9966436 ~ 9973817 (-)
G10708 NA non-coding downstream 27327 9748387 ~ 9748740 (-)
G10621 NA non-coding downstream 169872 9605638 ~ 9606195 (-)
G10562 NA non-coding downstream 314983 9457163 ~ 9461084 (-)
G10569 NA non-coding downstream 325141 9450560 ~ 9450926 (-)
G10518 ptbp2,ptbp2b,LOC107570490,LOC107594658 non-coding downstream 444824 9327802 ~ 9331243 (-)
G10773 NA non-coding upstream 145482 9926105 ~ 9927837 (-)
G10812 NA non-coding upstream 266195 10046818 ~ 10047373 (-)
G10869 selenof,sep15,LOC107693704,LOC107586130 non-coding upstream 377955 10158578 ~ 10160064 (-)
G10987 NA non-coding upstream 445595 10226218 ~ 10226856 (-)
G11057 NA non-coding upstream 885854 10666477 ~ 10666712 (-)
si:ch211-267e7.3 si:ch211-267e7.3,LOC107722581,LOC107594654,LOC107718186,LOC107589917,LOC107677774,LOC107693699 other downstream 157594 9606323 ~ 9618473 (-)
plppr5a plppr5,plppr5a,LOC107722655,LOC107693754,LOC107677753,LOC107589876,LOC108441579,LOC107718169 other downstream 256286 9491563 ~ 9519781 (-)
abca4b abca4,abca4b,LOC107564534,LOC107680047,LOC107745690 other downstream 566026 9182056 ~ 9210041 (-)
zfyve9a LOC107700554,LOC107563295,LOC107677579,LOC107553256,LOC107732202 other downstream 1348163 8403327 ~ 8427904 (-)
G10213 NA other downstream 1668279 8106856 ~ 8107788 (-)
hfm1 hfm1,LOC107722645,LOC107586144 other upstream 299559 10080182 ~ 10095857 (-)
pkn2a pkn2,LOC107693716,LOC107585639,LOC107722607,LOC107718113,LOC107691687 other upstream 339350 10119973 ~ 10139585 (-)
lmo4 LOC107722609,LOC107693715,LOC107691760,LOC107589910 other upstream 360312 10140935 ~ 10143709 (-)
ca8 ca8,LOC107693711,LOC107585586,LOC107691405,LOC107589840,LOC107722503,LOC102778484 other upstream 533410 10314033 ~ 10320403 (-)
G11011 chd7,LOC107585562,LOC107722533,LOC107688517,LOC107718105,LOC107589837,LOC107689390 other upstream 595440 10376063 ~ 10378211 (-)

Expression


Co-expression Network