sf3a2 (sf3a2,LOC107726326,LOC107696543,LOC107671791,LOC107750226)


Basic Information

Item Value
gene id sf3a2
gene name sf3a2,LOC107726326,LOC107696543,LOC107671791,LOC107750226
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 22780823 ~ 22784846 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043219140.1
CATGGAATTAGTTTACTTTAGCACACTTGTAAGCACACTTTTGTCAATAAAGTTGCGCACTTCAAAACAACAGGAACCGGAAGTGCATCGCTAGGCGCGCACGCGCATTGAGGTAGCGGCGGCAGCAAGCGTGATCAGGACGTTagGAGTGTGAGGAGAGGAACCTGTCGTCATGGATTTCCAGCACCGAGCTGGAGGGAAGACGGGCAGCGGCGGAGTCGCCTCGGCGTCCGAAAGCAACCGGGACCGGCGCGAGCGTCTCCGGCAGCTGGCCCTGGAGACCATAGACATCAACAAAGATCCCTACTTCATGAAAAACCACCTGGGCTCCTACGAGTGTAAACTGTGTCTCACGCTGCACAACAACGAGGGAAGCTATCTCGCTCACACGCAGGGAAAAAAGCACCAGACTAACCTAGCGAGGCGAGCCGCCAAAGAGGCGAAGGAAGCGCCGGCTCAACCCGCTCCAGAGAAGGTCAAGGTTGAGGTGAAGAAGTTTGTCAAGATCGGCAGACCCGGGTATAAAGTAACAAAACAGAGGGATCCCGAGTGCGGTCAGCAGAGTCTGCTTTTCCAGATTGACTACCCAGAGATAGCGGAAGGTATCGGGCCGAGGCACCGCTTCATGTCGGCGTACGAGCAGAGAATCGAACCTCCGGACCGTCGCTGGCAGTATCTGCTGTTCGCGGCCGAGCCCTACGAAACCATCGCGTTCAAGGTTCCCAGTCGAGAGATCGACAAAGCAGAGACTCGTTTCTGGACACACTGGAACAGAGAAACCAAACAATTTTTCCTGCAGTTCCACTTCAAGATGGAGAAGTCTCTGGCCGCTCCGCCGGGTCAGACGGTGTCTGTGGGAGTCAAGCGTCCTCCTTCGCTCATCACCGGACTCGGGCATCCTCACGGTGACTCCATGCCGGCGCCGCCGCCGGGAGGAATACACGGGATGCCGCCCGGGGCCCCCATGCCGCCCCAGATGCCCCCACAGATGCCTCCTCCGGGCGCCCTGCCTCCTCACCTGAGGCCTCCGCTCCCCGGCGACGGCTAGCCGAAGGGTCGAAGCTTTTATAGATGATGCATTGTTAAAGCATTTGAATGCATTCACTTAGGCATCTTATAATGCCTTTATACGACCTCATGAACAGTTGTAACCAAAGTTATAATACTTTTTAGTACAACTTTAGAAAACACAAACCATGCATTTTAACTTTGGTCGCAGttgtttatgaaaatatttttgtcatgcGTTATACATAAAGGCTTCAAGTGTTAACTTTCTAGACACAAATCAAcatgtttatttcctttttcttgAACACGGCCCTCTGAATATGTAGTGATTTGACAGTGGTGTGAATTTTCATTGATGGCAAGAGAACGGATTGTGTACCACAATgtccaaatgttatttttatgctttttttattattaaaaacatctttaacgTTGACACGA

Function

symbol description
sf3a2 Predicted to enable nucleic acid binding activity and zinc ion binding activity. Predicted to be involved in spliceosomal complex assembly. Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be located in nucleus. Predicted to be part of U2 snRNP; U2-type prespliceosome; and catalytic step 2 spliceosome. Orthologous to human SF3A2 (splicing factor 3a subunit 2).

NR:

description
splicing factor 3A subunit 2

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K12826 SF3A2, SAP62; splicing factor 3A subunit 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043219140.1 True 1455 mRNA 0.51 8 22780823 22784846

Neighbor

gene id symbol gene type direction distance location
tpgs1 tpgs1 coding upstream 7067 22770549 ~ 22773756 (+)
si:dkeyp-68b7.5 LOC107726324,LOC107671818,LOC107696531,LOC107552690,LOC107549807,LOC107750223 coding upstream 23150 22752753 ~ 22757673 (+)
si:dkeyp-68b7.12 LOC107696752,LOC107552668 coding upstream 29293 22730674 ~ 22751530 (+)
nectin4b LOC107726329,LOC107696495,LOC107671794 coding upstream 63008 22696081 ~ 22717815 (+)
ncstn ncstn,LOC107552665,LOC107671788,LOC107696591,LOC107726318 coding upstream 92507 22672101 ~ 22688316 (+)
LOC122328301 LOC107696585,LOC107552683,LOC107724989,LOC107549819,LOC107671817,LOC100151059,LOC108427150 coding downstream 48222 22833068 ~ 22870972 (+)
pias4b NA coding downstream 141467 22926313 ~ 22937828 (+)
map2k2b map2k2b,LOC107671813,LOC107726325,LOC107696522,LOC108427153 coding downstream 153941 22938787 ~ 22946858 (+)
tcf3a LOC107671808,LOC107696481,LOC107724980,LOC107552693 coding downstream 174140 22958986 ~ 22998516 (+)
mbd3a mbd3,LOC107713415,LOC107696467,LOC107552695,LOC108427158,LOC107724987 coding downstream 221051 23005897 ~ 23016480 (+)
G14553 NA non-coding upstream 3820 22776240 ~ 22777003 (+)
G14549 NA non-coding upstream 129980 22643795 ~ 22650843 (+)
G14541 NA non-coding upstream 194573 22522411 ~ 22586250 (+)
G14542 NA non-coding upstream 202600 22577023 ~ 22578223 (+)
G14540 NA non-coding upstream 266886 22512171 ~ 22513937 (+)
LOC122357472 NA non-coding downstream 1875 22786721 ~ 22802473 (+)
LOC122328317 NA non-coding downstream 28420 22813266 ~ 22829545 (+)
G14589 NA non-coding downstream 63067 22847913 ~ 22879465 (+)
G14605 NA non-coding downstream 241934 23026780 ~ 23028239 (+)
G14607 NA non-coding downstream 244321 23029167 ~ 23029879 (+)
fcer1gl LOC107671799 other upstream 85493 22691199 ~ 22695330 (+)
LOC122327931 NA other upstream 106548 22633529 ~ 22674275 (+)
LOC122327302 LOC107705949,LOC107599389,LOC107675701,LOC107737183,LOC107661566,LOC107586444,LOC107679834,LOC107719545,LOC107717972 other upstream 295168 22461916 ~ 22485655 (+)
fndc7a fndc7a,LOC107660526,LOC107671595,LOC107730461,LOC107568736 other upstream 913424 21857212 ~ 21867399 (+)
LOC122324535 NA other downstream 218319 23003165 ~ 23005254 (+)
G14831 LOC107679389,LOC107745621,LOC107567694,LOC108428304 other downstream 760260 23545106 ~ 23547974 (+)
LOC122323670 NA other downstream 1151075 23935921 ~ 23939016 (+)
LOC122327416 LOC107728372,LOC107569261,LOC107681443 other downstream 1260839 24045685 ~ 24048465 (+)
LOC122327425 LOC107728372,LOC107569261,LOC107681443 other downstream 1274566 24059412 ~ 24062202 (+)

Expression


Co-expression Network