crispld1b (crispld1b,LOC107732556,LOC107746925,LOC107664039,LOC107686081,LOC107550700)


Basic Information

Item Value
gene id crispld1b
gene name crispld1b,LOC107732556,LOC107746925,LOC107664039,LOC107686081,LOC107550700
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 14195559 ~ 14203218 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043219197.1
gccgcGCAATGACTCATGATGACTCATTCATAAAGAAACTTCAagaatcaaagaatcaaaacaGCTGGACACGTGTAGCCTATTTGATATAGAAAACGGCAACGAAATTATTTCAGCAAATCAACGCCGGAGATAAACATCCACGCGCTGAACGGCAAAAGGCAGAGGACAGATACCACATTGGATTTTGTAACTGACAGCTGTGGAAACATGAAGTGTGGACATGAAGATTTATTTAGTGGGTTTTTGCTGCTTGTGACTGTCCAAACTGTGGCATCCATGGTGATTCCCAATGCCACCCACTTAGAAGCCATCCTGGAAAAATACATGGATAAGGATGAGGCGTGGTGGCAATCCAAGTCAAGAGGCAAAAGAGCAATTTCACAGAGCGATATGCAACTGATTCTTGACCTACATAATAAACTGAGGGGTCAAGTGTACCCCCCTGCCTCAAACATGGAGTACATGGTGTGGGACACTGAACTGGAGAGGAGCGCTGAGCACTGGGCACACACTTGTCTGTGGGAACATGGACCGTCTCACCTGCTGACCCGGATCGGCCAGAACCTGGGAGCTCACTGGGGCAGAGACAGACCTCCGACATTTCATGTCCAAGCCTGGTATGATGAAGTGAGAGATTTCAGCTACCCCTATCCACAAGAGTGTAACCCTCACTGCCCCTACAGATGCTCTGGACCCGTCTGCACACATTACACACAGCTGGTTTGGGCCACATCCAACAAAATTGGCTGTGCCATCAATGTGTGCTACAACATGAATGTATGGGGGATGATCTGGGCCAAAGCTGTGTACCTGGTCTGCAATTACTCTCCTCCAGGTAACTGGTGGGGACATGCACCATACAAACACGGGACCCCTTGCTCTGCCTGCCCACCCAGCTATGGTGGCGGTTGCAGAAACAATCTCTGCTATAAAGATGATGGCAGTCATTATCATTACACCCCGGAGACAGAGGAAAATAACTATATTGAACCAGAACCCGAGCCAGTTCGAAGCCATGACACCCACTACAGAGATGAGACCCCGACATCTTCTCCCAACGAGAACATCGAGAGGAACGAAGTCATCAATACTTCTCAGATGTctcAGCAAGTAGCATGTGATACTAGATTACGAGATCAGTGCAAAGGAACTACTTGTAACAGGTACGAATGCCCACCAGGCTGCTTGTACAACTATGGGAAAGTAATTGGATCGGGTCATTATGACATGCAATCCAGCATCTGTGGTAGCGGCTTGCATGCTGGAATAATAGATGATGATGGAGGCTGGCTGGATGTCACAAGGGTGGGCAGAAGGCAACGATTCTCAAAGTCCTTCAAAAATGGAGTTCAGACTCTGGCGAAAAATCAGAGCGCCAATGCCTTCACCGTATCAAATGTTCCAGTGAAAGCAGTTAATTGTGAAACTACGGTGGCACAATTCTGCCCTTTCAAGAAACCGGTCCGGCACTGCCCCAGgttgtATTGTCCTCGTAATTGCTTGTATGACAGCTATGCCAGAGTAACTGGAACCCGCTATTATTCAGATAATTCCAGCATATGCAGGGCAGCTATCCATGCAGGGGTGATTCGAAGTGACTCGGGAGGTTATCTGGACGTAATGCCTGTGGACAAGAGGAAGCAGTACAAGGGCTCCTACCAAAATGGCATCACCTCAGAGAGCCTACAGAATCCCTCAGGAGGCAAAGCGTTCCGAGTGTTTGCGGTCATTTGAAACCATCGTCCAAGGACAGATGCAAGGAAATAGAGCTCTTGGTAACATAACAGCCAGTAATTACCACGCATTTGGTTTGCTGGTCTTGCTGGGCTGGATTTTAGGCCAGTGCTGTCACGAAAAATCTCCtcaacaggaaaaaaagacattgacTTTGACACCATCTGGCCCTGAGAAAACAAAGTctccatgatttttttttcctctgtgtgtAAATGTCATGTATATAATGTGCTGTAAATATAGTGAACTTTATTCATTACATCCAttcttgtatgtttttataaaacgtatacatttgttattttaagcacGTAAAGCTTtccttaaaataacaaaataggcAATTgtgcatgcaaacacaaaagTGTTAATGTCTGAACGTGTAGAAAAGGCCATATacattagtttatatttttgtaaacatatttttatatcagtgttCAGAAGCTGCTCGTTGGTGTATTGCGCTTTACAGTATATTATGCTGCATATGTTCAAAATTTGATACTGTAACAACCTGGCAGGCCAGGAAATCATTATTGCTTTAGaagaatttgaaaaatgtaccaCAAAAGGAGCAGTGGAGacacatttttgtgttatttattttcatgcaatc

Function

symbol description
crispld1b Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in epiphysis; pectoral fin; pectoral fin cartilage; pharyngeal arch 3-7 skeleton; and splanchnocranium. Orthologous to human CRISPLD1 (cysteine rich secretory protein LCCL domain containing 1).

NR:

description
cysteine-rich secretory protein LCCL domain-containing 1-like

GO: NA

KEGG:

id description
K24243 CRISPLD; cysteine-rich secretory protein LCCL domain-containing

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043219197.1 True 2359 mRNA 0.45 15 14195559 14203218

Neighbor

gene id symbol gene type direction distance location
pi15b pi15b,pi15,LOC107746926,LOC107686080,LOC107732565,LOC107550701,LOC107664030,LOC108435710,LOC107586375 coding upstream 849 14190469 ~ 14194710 (+)
tmem70 NA coding upstream 41887 14152066 ~ 14153672 (+)
rdh10b rdh10b,LOC107584387,LOC107751355,LOC107686027,LOC107732566 coding upstream 53702 14139477 ~ 14141857 (+)
kcnb2a kcnb2,LOC107584379,LOC107751354,LOC107686026,LOC107664054,LOC107550713,LOC108435719 coding upstream 59548 14117486 ~ 14136011 (+)
dnajb6a LOC107732567,LOC107584409,LOC107686029,LOC107751357 coding upstream 90054 14099350 ~ 14105505 (+)
socs6b LOC107746913,LOC107584321,LOC107686035,LOC107664088,LOC107732589,LOC107550707 coding downstream 11276 14214494 ~ 14218551 (+)
LOC122355826 LOC107746923,LOC107732576,LOC107550699,LOC107686037,LOC107664020 coding downstream 30601 14233819 ~ 14241872 (+)
atpsckmt fam173b,LOC107664046,LOC107746922,LOC107550697,LOC107686036,LOC107732578 coding downstream 39455 14242673 ~ 14244944 (+)
march6 march6,LOC107746911,LOC107686038,LOC107732575,LOC107664076 coding downstream 42037 14245255 ~ 14262414 (+)
ankrd33bb ankrd33bb,LOC107550706,LOC107732577,LOC107686083,LOC107664029 coding downstream 59346 14262564 ~ 14273620 (+)
G11832 rpl7,LOC107664057,LOC107584398,LOC107686030,LOC107550715 non-coding upstream 9773 14136114 ~ 14185786 (+)
G11856 jph1b,LOC107686034,LOC107746914,LOC107550709,LOC107584332,LOC107732545,LOC107664083 non-coding upstream 28604 14108155 ~ 14166955 (+)
G11855 NA non-coding upstream 31182 14131759 ~ 14164377 (+)
LOC122357607 NA non-coding upstream 96712 14091564 ~ 14098847 (+)
G11836 NA non-coding upstream 143939 14048717 ~ 14051620 (+)
G11894 NA non-coding downstream 166470 14369688 ~ 14371834 (+)
G11895 rgs20,LOC107584260,LOC107746905 non-coding downstream 168700 14371918 ~ 14375750 (+)
G11898 LOC106524523,LOC107383785 non-coding downstream 185767 14388985 ~ 14437409 (+)
LOC122355240 NA non-coding downstream 292232 14495450 ~ 14497873 (+)
G11914 NA non-coding downstream 356642 14559860 ~ 14603545 (+)
G11854 jph1b,jph1,LOC107584332,LOC107550709,LOC107746914,LOC107732545,LOC107664083,LOC107686034,LOC107740042 other upstream 15944 14175364 ~ 14179615 (+)
rnf152 rnf152,LOC107729101,LOC107679332,LOC107567413,LOC107674343,LOC107714840,LOC107584540 other upstream 1321551 12867929 ~ 12874008 (+)
LOC122358236 NA other upstream 1569172 12623823 ~ 12626387 (+)
pld1a pld1a,LOC107688495,LOC107550602,LOC107680234,LOC107722545,LOC108442335 other upstream 2257969 11908073 ~ 11937590 (+)
mast3a LOC107722547,LOC107688474,LOC107680242,LOC107550619,LOC107709878,LOC107586070 other upstream 2687855 11482104 ~ 11507704 (+)
plxdc2a LOC107686089,LOC107713976,LOC107751571 other downstream 542889 14746107 ~ 14753161 (+)
ackr4a LOC107664061,LOC107751559,LOC107556724,LOC107751558,LOC107751560,LOC107713978,LOC107586293 other downstream 573104 14776322 ~ 14782977 (+)
LOC122357435 LOC107733881,LOC107599885,LOC107657419 other downstream 1038579 15241797 ~ 15249249 (+)
dars2 dars2,LOC107720851,LOC107700987,LOC107558296,LOC107599907 other downstream 1656961 15860179 ~ 15875764 (+)
G12531 LOC107722077,LOC107568983 other downstream 2063825 16267043 ~ 16268797 (+)

Expression


Co-expression Network