best4 (best4,LOC107729385,LOC107674419,LOC107714835,LOC107602543)


Basic Information

Item Value
gene id best4
gene name best4,LOC107729385,LOC107674419,LOC107714835,LOC107602543
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 12282082 ~ 12286011 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043219208.1
TGATAGCTCCACATTGAAGACAAATatataaaggaaaaaacaaGAGGTGTGTTTTCCCTCTAAAAGAAGTCGAGCTGGAAACTCTAAGttttccaCCATGACGGTATCCTACACACTCAAGGTGGCTAATGCTAAGTTTGGAGGCTTTACAAAGTTGCTCTTCCGATGGAAAGGAAGCATTTACAAGCTTCTATACAGAGAATTCCTGGTCTTCTGTTTCCTGTACGGCTTCATCAGTATTCTATACAGATGTGTCCTCGATAACACACAACAAGAGGTGTTTGAGCGACTTGCACGCCATTGCAACAAGTTTGCCAAACTCATCCCTATGTCATTTgttcttgGTTTCTATGTCACCCAGGCGTTTCAGCGTTGGTGGGGTCAATATACAAGCTTTCCCCTGCCTGATAACCTGATGATGGTCGTGTCTGGGAACGTCCACGGCACAGATGAAAGAGGCCGTCTGCTGAGGAGAACTCTGATGAGGTACGCAAACCTGTCCTCGGTCCTCATCCTGCGCTCCATCAGTACACGGGTACGCAAGAGATTCCCGGCTCTGGAGGACATCGTGGAGGCAGgattcATGACCGCAGACGAGCTCAAAAAACTAAACCATCTGTACTCTGACTTCAACAAATACTGGATGCCACTTACATGGTTTGCAAATCTGGCGTCGCAAGCGAGAAAAGAAGGGCGTGTGAACGATGATATAGCCTTGCGACTGCTCATGGATGAGCTGAATAACTATAGATCAAAATGCAGCATGCTCTTCCACTACGACTGGATCAGCATCCCCTTGGTGTACACACAGGTAGTGACCGTGGCTGTGTACTCCTTTTTTATGTTCTGCCTAATTGGGAGGCAGTTTGTAAAACCAGAGAAACCCGATGAAGACAAAATTCATCTAGACCTTTATGTCCCCATCTTCACTCTACTGGAGTTCTTTTTTTACGCTGGTTGGTTAAAGGTAGGGGAACTTATTATAAACCCATTTggagaagatgatgatgattttgaGACCAATCAACTCATAGATCGCAACATTCAGGTTTCCATGCTAGCTGTAGATGACATGCATCATAATCTTCCTCTGCTTGAGAAGGACAAATACTGGGTGGATAAGGGTCCTTCATATCCTTCAGCTACTATGAAGCCTGTCTTCATGGGTTCCACACACGACATGAGGATACTTGAGGATGATAACGAGGAACCTTTAGCAACCCCCAAGACACAAATGCTTGCCATCAATGTGTGGCCAACTactcacaaaaaaaagcagaagaacAAGAGCTTGCAGCAATTATGTCTTTGCTGCAGGTCTAAATGTAAGGGTGAGCGCTCAAGGCTTGAACAGCCTATGAAGAGCAGCATCCCATCAGCACTGCAGCAACAACACATGATTATTCAACATGTTTGCCCTGATAAACTCTTGGGGTCACCTGAAACTACAGGGCAAGCAAACCAAGAGccataaatgttaaaactacCATTACAGGTTTTGCTTTGCAAGATTTTTTTCTGGGATATTCAAGGATACATTTATCCCTGcttacatgtttttattgtcttattAAAGATACATTGTGCAACA

Function

symbol description
best4 Predicted to enable chloride channel activity. Predicted to act upstream of or within chloride transport. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be part of chloride channel complex. Orthologous to human BEST4 (bestrophin 4).

NR:

description
bestrophin-4-like

GO: NA

KEGG:

id description
K13881 BEST4, VMD2L2; bestrophin-4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043219208.1 True 1591 mRNA 0.44 10 12282082 12286011

Neighbor

gene id symbol gene type direction distance location
acadm acadm,LOC107688505,LOC107584839,LOC107674066,LOC107602542 coding downstream 11610 12267085 ~ 12270472 (-)
rabggtb rabggtb,LOC107584851,LOC107732517,LOC107576861 coding downstream 15960 12261916 ~ 12266122 (-)
cldn11a cldn11a,LOC107586547,LOC107732506,LOC107550596 coding downstream 187501 12092365 ~ 12094581 (-)
ghsra LOC107586567,LOC107722546,LOC107688542,LOC107732507,LOC107550603,LOC107680230 coding downstream 378124 11901080 ~ 11903958 (-)
nceh1a nceh1a,LOC107709885,LOC107722613,LOC107688490,LOC107584973,LOC107550609,LOC107680241 coding downstream 587604 11691551 ~ 11694478 (-)
si:ch211-106k21.5 si:ch211-106k21.5,LOC107688547,LOC107729472,LOC107714834,LOC107674086,LOC107602518 coding upstream 1414 12287425 ~ 12292955 (-)
LOC122328397 LOC107688509,LOC107729466,LOC107714866,LOC107674362,LOC107602512 coding upstream 7337 12293348 ~ 12319104 (-)
ndc1 ndc1,LOC107674092,LOC107602511,LOC107584806,LOC107688508 coding upstream 33659 12319670 ~ 12327438 (-)
zgc:113691 zgc:113691,LOC107714832,LOC107729460,LOC107586526,LOC107674428,LOC107688550,LOC107688549 coding upstream 41781 12327792 ~ 12329094 (-)
yipf1 yipf1,LOC107688551,LOC107586505,LOC107729441,LOC107602540,LOC107714864,LOC107674435 coding upstream 43740 12329751 ~ 12334468 (-)
G11551 LOC107657932,LOC107700454,LOC107585903,LOC105895027,LOC107549844,LOC107743876,LOC107710907,LOC107579213 non-coding downstream 872 12279758 ~ 12281210 (-)
G11549 NA non-coding downstream 9692 12271743 ~ 12272390 (-)
G11429 NA non-coding downstream 245653 12035009 ~ 12036429 (-)
G11425 slc2a2,LOC107586013,LOC107722632,LOC107680265,LOC107550598 non-coding downstream 249002 11943133 ~ 12033080 (-)
G11426 NA non-coding downstream 250357 12028135 ~ 12031725 (-)
G11565 NA non-coding upstream 53265 12339276 ~ 12359064 (-)
G11572 NA non-coding upstream 66468 12352479 ~ 12353826 (-)
G11561 NA non-coding upstream 75640 12361651 ~ 12366865 (-)
G11559 NA non-coding upstream 86561 12372572 ~ 12374335 (-)
G11568 NA non-coding upstream 88640 12374651 ~ 12439008 (-)
hltf hltf,LOC107688483,LOC107722619 other downstream 667144 11592441 ~ 11614938 (-)
G11317 pde4ca,pde4c,LOC107722623,LOC107680260 other downstream 704566 11576391 ~ 11577516 (-)
crsp7 crsp7,LOC107722610,LOC107688472,LOC107550620,LOC107709903,LOC107585090,LOC107680253 other downstream 828879 11447089 ~ 11453203 (-)
cnn2 cnn2,LOC107585101,LOC107688471,LOC107709904,LOC107550622,LOC107680261 other downstream 836969 11440990 ~ 11445113 (-)
kcnn1a LOC107722564,LOC107585128,LOC107718068,LOC107680246,LOC107589798 other downstream 876382 11379243 ~ 11405700 (-)
xkr4 xkr4,zgc:123035,LOC107728991,LOC107679338,LOC107714844,LOC107674319,LOC106569249 other upstream 503513 12789524 ~ 12838093 (-)
LOC122323969 cahz,LOC107550722,LOC107755757,LOC107664098,LOC107686019,LOC107585971,LOC107751363,LOC108432254 other upstream 1029218 13315229 ~ 13470263 (-)
LOC122328470 ptbp1a,ptbp3,LOC107602545,LOC107674042,LOC107732511,LOC107584874,LOC107558691,LOC107658670,LOC107744247,LOC107729315,LOC107688524 other upstream 1267762 13553773 ~ 13564365 (-)
adcyap1b adcyap1b,adcyap1,LOC107713980,LOC107686049,LOC107751550,LOC107664073 other upstream 2292984 14578995 ~ 14610266 (-)
faim2a faim2a,LOC107718029,LOC107701017,LOC107556958,LOC107657438,LOC107709826 other upstream 2834576 15120587 ~ 15127491 (-)

Expression


Co-expression Network