kcnab1b (kcnab1b,LOC107600068,LOC107721779,LOC107557878,LOC107692887,LOC107749128,LOC108428302,LOC108280191,LOC104919203)


Basic Information

Item Value
gene id kcnab1b
gene name kcnab1b,LOC107600068,LOC107721779,LOC107557878,LOC107692887,LOC107749128,LOC108428302,LOC108280191,LOC104919203
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 21423826 ~ 21462693 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043219271.1
GCAGTGGACTACATGTGACACACTGCGAAATGAGAACGACATCTGCATTATATACGTATCCAAGTgtatcacactcacacacgtcCCATCCAGATGGATTGTCTTCACTCTCTCTGTTGAGCGCAGCACTGAGCCGCCGGTGAGAGACTGCAGTTATTTCAGTCTCAttgcagtctctctctctctctccatctcccactctctctctctctctctctctccctccttaACGTCTCTGATTGAGCATCATTCTCACATGCTACGCTTTCATGCCTCCTCtttcacactcactctctctctctccatctccgtTAGCTTCTCTTTCACTTACAGCCCCAGTGATCATGCCGcatccccctctctctctgtcctctcctCTGCCTGTCTGCTTTCGTTTACATATTTCTTCATCAAACTGACTGCTTTCAGTGCCCGCCGAACTGCATTCGCCTGTTTTCGGAAAGAGGACATTTAGATGTGGGACGCTGGGTGTTTTTCACCTTGCAGCTCACTCATCTGGACGGCTTTCGGAAGGTCGCCCGGCTCCGTCCTGGAGTTTCAGGAATACATCGATCATCCGGTTTGCAGCCCATCAGAGTCTAGGAGTCTGTTGCATAGCTGCGCGTCTCCTGCGGTGCACTCGGACTGCTCTTATAGTCTCGGTGAAGAGCGTGGGCTGAAGAAAACCCCCTCAGCCCGTCACCTGCCAGAGGAGGAACACCATCGAGGGTCAGCTAAGATCAGTGGAGGGGAAAGCGTGACAAAAGGAAGAGAAGACTGAAGGGCACAGCAGTATCACGCAGGATCAGCTCCTATTGGGAGAAAGAGCAAGAGTTttagaaagacagagacaggCTTTAATTTGTAAACTTGTGACTGTAAACTTCAGTATTTTAGATCCAATCCAGAACTCTATCCTGATTCTCTTGGACTTCCCGGACAACCTGTGTCTATTTTTTCTGCACAAGTTGCTTTGCAGTTAACAGCCATGCAGGTGTCTTTCGCGTGCACGGACCACGGGTTGAAGGCCCCGCGCACCAGCGAGCCCAACAAGCAGAACACCTCGAGTCCGAACACGGCCAGCGCCGCACGGGCACGGTTCCGAACGGTGGCTCTGATCGCCCGGAGCCTGGGCTCCTTTACACACAGGCACCACATTTCCCTGAAAGAGTCCACCGGAAAACTCACCGGCATGAAGTACAGGAATCTTGGGAAGTCAGGGCTGAGAGTGTCATGCCTTGGACTCGGCACGTGGGTGACATTCGGGGGACAGATTTCAGATGAGgtGGCTGAGCAGCTGATGACTATAGCCTATGAAAACGGGGTCAACCTCTTTGACACTGCAGAGGTCTATTCAGCTGGGAAGGCTGAAATAATCCTAGGAAACATTATCAAGAAGAAGTGTTGGCGGAGATCTAGCCTGGTTATCACCACTAAACTGTACTGGGGAGGAAAGGCAGAGACAGAGCGTGGGCTCTCTAGGAAGCACATTATTGAAGGTCTGAAGGGTTCTTTGCAGAGGTTGCAGTTGGAGTATGTGGATGTGGTTTTTGCCAATCGTCCCGACAGCAACACACCAATGGAGGagaTAGTAAGAGCCATGACGCATGTCATTAACCATGGCATGTCCATGTACTGGGGCACATCACGCTGGTCAGCGATGGAGATCATGGAGGCGTATTCTGTAGCGAGGCAGTTTAATCTGATTCCTCCTGTGTGTGAACAGGCTGAATATCATTTATTCCAGAGGGATAAAGTGGAAATGCAGTTGCCAGAGCTTTACCATAAGATTGGTGTTGGAGTGGTTTCCTGGTCTCCTCTAGCCTGCGGCATCATCACAGGGAAATATGAAAACGGCATCCCAGAATCCTCTAGGGCCTCTTTGAAGtcgTACCAGTGGTTGAAGGAGAAGATTCTGAGTGAGGATGGCAGAAAGCAGCAGGCGAAGCTTAAGGAATTGACCCACATAGCTGAGAGGCTCAGCTGTACCCTGCCACAACTTGCCATCGCCTGGTGCCTCCGTAATGAAGGAGTGAGTTCTGTTCTCCTGGGGACCTCCAACCCTGCACAGCTCACTGAGAACCTGGGGGCGATACAGGTTCTTCCAAAGATCACCGCTCACGTGGCCTCGGACATCGACAAAATCCTGGGTAACCGTCCCCACAGTAAGAAGGACTACCATCACTAGGCCTTTCTGTGAACCTGTAAGCCTTGAGACTCAGGATCCCGTGCCAGCCCTCTCGTGTCGGCGGGTGTCCACAGTGTGTGATTCCCAccattgtgtgtctgtgtcaaCTTCTCCTGCAGAGAGCCATCGTTACTGTTACAGTAGAAATGCTAAAGTGTTATGCATGCTTCTGTTCGACCTATACCTGAGCTCAATGTTGCATTAAGATCTCCGTGGAGACACACCTGCCTGTGAAGCACAGAAGCTCCTGGACTCCCTCGTCTGTGGGGTTTGTATTCAGCTGTCATAACCCATATGTGCCAAAGTGAACATGGACTTGACCCTTGACCTCCAGACATGCATTCTGAAAAGGGGTGAATGACAGGCCCTCGTGAATGGCCCCCCGATTATGGTCTATAATACATAAAGTAAAGAAACGCACTGCATATCATTTTGAGAATGTATGAACTAGGAACTGTGACGTATGGCAGAGCAGCATGTGTACATCGGTAAAAATGTGTTGGATTAAAAAGCCATCAACAGCAAAGCGGGCTGttattgtgtttaaatgttCTCCAAAAAGTTTAACATCTTTAAACgactgtttatgtgtgtttccCTGCGATTTGTGTCACGTCTGATACGTTCAACAATTTCTTACTTCTCCATTGTTTTcattgtacattataaaaaaaagtagtttgttCAAATGCTTATCCAGTGTTACACTGGTTAAAGATTTAAATGCTTGCTGCTGTATTTGGCAACTTTTGAACTGCTAAGcagtacatacagtacagtCCCGAGAGTGACAGAAATGCACAACTACTAAAAGCAACTAGTTCGTGACCATAAAAAAAGGGGTCAAAATGTTTACAGACTTGAAAATGAAGAAGCtgttaattaatgcattgtGCAGAGtgcttttaacattaaaataaaaatgtgcatctcca

Function

symbol description
kcnab1b Predicted to enable aldo-keto reductase (NADP) activity; potassium channel regulator activity; and transmembrane transporter binding activity. Predicted to be involved in negative regulation of delayed rectifier potassium channel activity. Predicted to act upstream of or within potassium ion transport; regulation of ion transmembrane transport; and transmembrane transport. Predicted to be located in cytoplasm and plasma membrane. Predicted to be integral component of membrane. Predicted to be part of voltage-gated potassium channel complex. Predicted to be active in juxtaparanode region of axon. Predicted to be extrinsic component of cytoplasmic side of plasma membrane. Is expressed in female organism. Human ortholog(s) of this gene implicated in temporal lobe epilepsy. Orthologous to human KCNAB1 (potassium voltage-gated channel subfamily A regulatory beta subunit 1).

NR:

description
PREDICTED: voltage-gated potassium channel subunit beta-1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043219271.1 True 3123 mRNA 0.48 14 21423826 21462693

Neighbor

gene id symbol gene type direction distance location
zgc:152670 NA coding upstream 26286 21391118 ~ 21397540 (+)
nlrb5 NA coding upstream 177826 21227323 ~ 21246000 (+)
arhgap12a LOC107659443,LOC107749196,LOC107557799 coding upstream 218953 21185209 ~ 21204873 (+)
epc1b epc1b,LOC107563811,LOC107690579 coding upstream 278536 21131009 ~ 21145290 (+)
LOC122356829 itgb1b.1,LOC107749109,LOC107563812,LOC107690580,LOC107721729,LOC107660233 coding upstream 293497 21123039 ~ 21130329 (+)
pask LOC107749168,LOC107600066,LOC107659937,LOC107692875,LOC107721791 coding downstream 105 21462798 ~ 21474564 (+)
mterf4 LOC107749141,LOC107659952,LOC107721702,LOC107600070 coding downstream 11918 21474611 ~ 21477524 (+)
LOC122354646 LOC107660261,LOC107749204,LOC107600105,LOC107692861,LOC107721704,LOC101885431,LOC107557850 coding downstream 14966 21477659 ~ 21480866 (+)
klhl24a klhl24,klhl24a,LOC107749171,LOC107600063,LOC107659963,LOC107721788 coding downstream 21086 21483779 ~ 21501610 (+)
yeats2 yeats2,LOC107692872,LOC107721785,LOC107749094,LOC107600062,LOC107557852 coding downstream 41507 21504200 ~ 21532284 (+)
G14212 LOC107557873,LOC107721701 non-coding upstream 53327 21365808 ~ 21370499 (+)
G14234 NA non-coding upstream 77725 21342371 ~ 21346101 (+)
G13983 kif5b,LOC108232928,LOC106522897,LOC106906931,LOC103138015,LOC106962517,LOC103479480,LOC101155960 non-coding upstream 254939 21166088 ~ 21168887 (+)
G13995 LOC107749107,LOC107659422,LOC107563825 non-coding upstream 270044 21152103 ~ 21153782 (+)
G13994 NA non-coding upstream 272690 21150658 ~ 21151136 (+)
G14285 NA non-coding downstream 94151 21556844 ~ 21557398 (+)
G14315 NA non-coding downstream 254078 21716771 ~ 21717992 (+)
G14316 NA non-coding downstream 257225 21719918 ~ 21720575 (+)
LOC122359002 NA non-coding downstream 348236 21810929 ~ 21812903 (+)
G14476 NA non-coding downstream 431915 21894608 ~ 21895131 (+)
G14211 NA other upstream 62118 21307407 ~ 21361708 (+)
G13998 LOC107659744,LOC107749160,LOC107563810,LOC107563823 other upstream 259004 21163942 ~ 21164822 (+)
LOC122326305 LOC107749119,LOC107602627,LOC107566983,LOC107690079,LOC107721763,LOC107721764,LOC107678697 other upstream 915435 20493174 ~ 20508391 (+)
G13882 LOC107749119,LOC107602627,LOC107721764,LOC107659530,LOC107721763 other upstream 938608 20481664 ~ 20485218 (+)
gbp2 LOC107678697,LOC107602627,LOC107690079,LOC107721763 other upstream 950302 20467268 ~ 20473524 (+)
LOC122354659 LOC107749134,LOC107659944,LOC107600069,LOC107692888,LOC107557869,LOC107721709,LOC101885494 other downstream 18441 21481134 ~ 21482642 (+)
ece2a ece2a,LOC107660439,LOC107600061,LOC107557862 other downstream 70552 21533245 ~ 21621097 (+)
ccl20a.3 LOC107749165,LOC107660500,LOC107557866 other downstream 251990 21714683 ~ 21716290 (+)
LOC122327294 aknad1,LOC107749213,LOC107660326,LOC107730428,LOC107671582 other downstream 380882 21843575 ~ 21853007 (+)
fndc7a fndc7a,LOC107660526,LOC107671595,LOC107730461,LOC107568736 other downstream 394519 21857212 ~ 21867399 (+)

Expression


Co-expression Network