plvapa (LOC107688534,LOC107722517,LOC107586083)


Basic Information

Item Value
gene id plvapa
gene name LOC107688534,LOC107722517,LOC107586083
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 11353433 ~ 11356400 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043219393.1
AACttcttattttgcttttgaTGTTTTAGGAGTGAAGGAGCTTGATTAGGTCAGTGATGTACAACAGCAGGTACTCTCAGGCCAACTTTGGCTTGGCTGCCAAGAAGATGCACAAGTCAAAAGGCAAGAGCTGTGGTTACTACATGAAGATCGTCTTCTTTTTCTCCTCACTCATCCAGTCACTGATCATCGCGAGTCTGGTGCTCTTTCTGGTGTACGGACAGCCCGAGCACACGGTGGAGGAGAAGAGGCTGCAAGAGCTGGACCAAAGCGTCAGCAAACTCACGATGGAAAATTTCGTTCTCCGTGGGAAGGAAAAGAACCTCACCAAAGTTCTGAACGTCACTCTCACTGCAAAGCAGATCAATGACAAAGCTCTGGCTGAATTACGCAGACTGGCGAACACCTCATCTCTGACAATAAGGAACATGCAAATAACAATGTCACGATGCGAGATGGAAAAAAGAACGGTTGGACCCAGGTCATGTCCTCCTATGTATTGTCCAGATACAAGTGacaACAGACGCTTGCAAAGTATGCTCCAGCAGTCAGAGGATATGCTAAAGCTGGTTAAAGCAAACTTTACTCAGATGGTGAACAATGCAAAAACTGAGCTGGACAATTCCAACAAAGACAAGGATGGGTATCACTTGGAAACAATTCATCTAAGGCGAGACAAGGCTTTCCTTGAAGAGGAGCTTGCCTTGTACCAAAAGAAGTGCAAAGAGGATTTTGGCGCTTCTTTACAAGAAATCCCTAACGTCACCAAAGAATTCCTTAAAAGGATCGATGATTTTTTCGCAAAACATATTTCTTTCCAGCTAACGTGCGATAAACAAAAAAGTCAGCTCGAAGACATTCGGGAAAACTGTAGCAGTCTTTCAAGAGAAGTCGAAAACAAGCTCCAATCCTATCTGAACGTAGTGGGGAACCAGGTCACAAGAATTCATGGGGAAAATGCCAAATATACGATAGACAACATACGTCTGAAAGAGGACGCTACGTGGTGCAATCAGAATCGCAGTGTCATGATTCGCGAGCATCGCAAAACTCTTGATCAACTTCAGCTCAAGAACGACCAAGACAGTGAAAAACTTCTGCTGGAGAACAGAAAACTAAAAGATGATAACAAACTAAAAGGCGAGCTCATCTCTTtgagagaaaatgaaattaaaacgcTCAAAAGCACAGTTGAGCATCTCAATACTACACTTGCCAACTGTAAGccgACAGTTCGAACTAACCCATTCATGCCAAACCCCTTTGGTTTGCCAAACGTACCAAATACTGGTGGGACCGGTATGAGTTCAACAGGTCTAAGCAAACCAAACGTGCCATGGACCGGGGCTGGCTCCACTGGATCAGCATTTCCGAACTCTAATGGTGTAGGATCAAGCACAAGATGGGGCAACACAGGAACAGGTATGACAGGATCATTAAATACAGCTGTAGGGGGGACAGGGAGCCTTTCAGGTGTACCGGGCAGCACAGGATTAGGTGGATCAACTAGAACAGGTTTAGCCCAGACTGGGACAAGTAGTTTGGGTGGAGTAGGACCGGGGTTGGCAGGATTTGGCGGCGTTGGATCAAGCCCTTCTGCGATCGGACAAAGTGGACCATTCAGCAGTGCAGGATCAAGTGGAGTAGGGATGGGAAAACCAGCGATAGGAGGTCTTGGATCACTCGGGTCTAACACACCTGGAGCAACTCTTGCAGGGACAAGAACACCAACGGGTGGAGCCGAAGTAAGCCAAGCACAGATCAGTCTTCATTTGAAGGAGCTGCATCGTTACTTACTCCAAAATTGAGGGAGCGAACAAAGTCCTGGCAAAAATCCCAGTCAGAACTGTCTATAACGGTTTGAAAATAGAAAACCTAAATGTACTGACTCTGCAAATCTTTGATGTGAATACTAATTATTAACACGAATATCAGTTACATTTTGTGGGATgaaattgaaaatgtcttttgtgcattaaattcatttatgcTTGTATATaccttataaaatatatatcttgtaTATATCTATCACtacaattttctattttttgtaaacttattttttattggTTCTCTTgatgcatgaaataaaac

Function

NR:

description
plasmalemma vesicle-associated protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043219393.1 True 2097 mRNA 0.44 5 11353433 11356400

Neighbor

gene id symbol gene type direction distance location
ano8a LOC107718073,LOC107688459,LOC107589801,LOC107586092,LOC107722556,LOC107680225 coding downstream 2769 11341388 ~ 11350664 (-)
myh7 vmhc,LOC107688458,LOC107722552,LOC107589804,LOC107680223 coding downstream 40715 11301092 ~ 11312718 (-)
slc12a7a LOC107722598,LOC107585218,LOC107589906,LOC107718080,LOC107688522 coding downstream 126184 11206444 ~ 11227249 (-)
LOC122359349 rabggtb,LOC107584851,LOC107732517,LOC107576861 coding downstream 194120 11155262 ~ 11159313 (-)
col15a1b LOC107585244,LOC107722600,LOC107688455 coding downstream 464160 10864071 ~ 10889273 (-)
zgc:154006 LOC107722587,LOC107688535,LOC107585150,LOC107680250,LOC107718071,LOC107688536,LOC107722589 coding upstream 11170 11367570 ~ 11377879 (-)
insl3 LOC107586604,LOC107722567,LOC107688537,LOC107680263,LOC107589901,LOC107709882 coding upstream 57906 11414306 ~ 11414845 (-)
si:rp71-39b20.4 si:rp71-39b20.4,LOC107585115,LOC107722566,LOC107688468,LOC107589795,LOC103032005 coding upstream 61542 11417942 ~ 11420734 (-)
crtc1a NA coding upstream 102051 11458451 ~ 11467496 (-)
LOC122361755 NA coding upstream 119221 11475621 ~ 11476171 (-)
G11246 NA non-coding downstream 53417 11293215 ~ 11300016 (-)
LOC122359499 LOC107689414,LOC107722600,LOC107585244,LOC107688455 non-coding downstream 183201 11167903 ~ 11170232 (-)
G11237 LOC107722600,LOC107585244,LOC107688455 non-coding downstream 186034 11165967 ~ 11167399 (-)
G11234 NA non-coding downstream 202929 11147248 ~ 11150504 (-)
LOC122359521 LOC107674200,LOC107602529,LOC107729365,LOC107584650,LOC107679329 non-coding downstream 232646 11116997 ~ 11120787 (-)
G11263 NA non-coding upstream 66270 11422670 ~ 11423431 (-)
LOC122328878 NA non-coding upstream 83602 11440002 ~ 11440899 (-)
G11280 NA non-coding upstream 97858 11454258 ~ 11455403 (-)
G11281 NA non-coding upstream 99926 11456326 ~ 11456854 (-)
G11292 pik3r2,LOC107688475,LOC107586063,LOC107722495,LOC107680216,LOC107709897,LOC107550618 non-coding upstream 156228 11512628 ~ 11513282 (-)
trnau1apb LOC107688461,LOC107585172,LOC107722553,LOC107680226,LOC107589802,LOC107718075,LOC102202587 other downstream 13822 11335718 ~ 11339611 (-)
LOC122359462 NA other downstream 450808 10897549 ~ 10902625 (-)
LOC122359216 tgfbr1a,LOC107688454,LOC107585257,LOC107722631,LOC107589809,LOC107718081,LOC107689415 other downstream 491838 10767974 ~ 10861595 (-)
G11105 LOC107688455,LOC107585244,LOC107722600 other downstream 550145 10800716 ~ 10803288 (-)
G11102 tgfbr1a,LOC107585257,LOC107722631,LOC107688454,LOC107689415,LOC107718081 other downstream 588542 10758028 ~ 10764891 (-)
kcnn1a LOC107722564,LOC107585128,LOC107718068,LOC107680246,LOC107589798 other upstream 22843 11379243 ~ 11405700 (-)
cnn2 cnn2,LOC107585101,LOC107688471,LOC107709904,LOC107550622,LOC107680261 other upstream 84590 11440990 ~ 11445113 (-)
crsp7 crsp7,LOC107722610,LOC107688472,LOC107550620,LOC107709903,LOC107585090,LOC107680253 other upstream 90689 11447089 ~ 11453203 (-)
G11317 pde4ca,pde4c,LOC107722623,LOC107680260 other upstream 219991 11576391 ~ 11577516 (-)
hltf hltf,LOC107688483,LOC107722619 other upstream 236041 11592441 ~ 11614938 (-)

Expression


Co-expression Network