samd7 (samd7,LOC107591340,LOC107557490)


Basic Information

Item Value
gene id samd7
gene name samd7,LOC107591340,LOC107557490
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 17253232 ~ 17259748 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043219449.1
TCTGTGttgcatgcacacaaaaaaacacttgaaagacACATGCACATCTTGCTTGATTTCAACTGACACTGGAAAAGGAAGCTGGGCATTTAGGTGTCTTACCCTCGGTCTTAAAGTGCTAACAGAGGATTACTGAGGTAAATGTTGAAAGAGGTTTAGCCGCTGTGCTTAGGCAGTGCTCTTAATTACATTTCAGCAGAGTGTCCCGCGTGCAGTTGGACGAGAGATCATAGTGATGTCAGGTAAGGGGGGGCTTAAGCAGGCAGATAAAGCCAAGCTAATAGAGATAACATGAATCTGTAATTAAAGGTCTTTTTTAGTTAAGACCAGGAGCTGGCACTTGTTGGCCGAGGCTTTTGCGGCAGGACTGGAGACCTCAGAGCGCCGAGAGTTGTGGACTTTCTTGTTGCTGCTTCAGGTCTCATGCTCATTTCGGAATAATTTTGCTTGTTTGGAATGAATGCGTTAATATTTTCATCCTGACTGAGAGTTTGGACAGATTCCCACTTCTCTGGCAGACATTCAGAGTTTCACACTAAAAAGGAGTGACATTACGGAAATATCTTACACCTGAGTGAGTGAAGATAAAGCACAGGAGGAGTGAACAGTCAGAAAAGAGGCACTGTCATGACCCCTCGTGAACAGCTAAGGAAGATATCAGCGCTTGGAGAGCAAGGCGCTTTAGATGAGAAACACTGGTACCGACTAGTCAATGGAATGTCTGCTGGAGCAGAGCTACGGCAAAGGCAGGAGCTCATGATGAGGAACCAGATGGCCATGGCTCCACAGATCTTGGCTCAGGGGCAGCAGAGACTGCAGGGTGTGCCTGCACAGTTTGATCCCCGCTTCATGGAGAGGGAACTGGTGCCACCCACTGAAATGGTATCAGCTGATGCTAGACAAATCCACATGGGTGCCCACCTGGGCCCACCTCTACCCCCAAACTCAAATGTTATTCCAGGCAGAGGATTCCCTGGCACAGGTTACGGATTCCTTCCAACTGAATCCATGGAGACGGTTGCTAGACGACAAGAGTTAATTCACAAACAGAACATAGCCAGgaTGGAGATGAATGCTATCCTGCACCAAAAAGAATTGGAGAATGCCCACCAAAAGGGCCTTATTGGGATGGAGAATCCCATGATGTACCAGGGCATTCAACCCAATCCAATGGCCTTCAGGGGACGCCAGCGACTCCCAGATGGACATGATGTGTTCGTCCATCGCACCGCCCTTGAAGACCTGCACGCTAACAGTCTCCTCATGTCGAGCCCTTACCCACCGATCAGCACACTGCAAAGGGAGCGAGGACGCAGGACAGGCAGAAGGACTGCCAATCATAAGAGCTCAGACAGCAGCATCACTCTCCCCaaaggccaatcagaagagaagAACATCGAGCAGAGTCCAGGAGCTGCCTCTGGGGAAGAGAAGGAAGTTGAAGGGAAAGGCGAAATGAGCAATGATGCTACCACCAGCAAACCACACCAAACCAAAGTAGAAACAGAGCTGTCTTCTGGATGTAGTAGGAAAGGTTTTAAGGAAGGAGAGCCAGGGATTCGCAAGACATGTATTAGTGGACAGGAGGGATGTGCAGAAGTCACCAACTGCAACGCTAGCACCAGTGACAAAGACATATCCAACCCTTGCTCGGCTTTCCAAGAAAAGTTTCTGTATCCGTCTGCTCCTGGCCCACTCACAGGGATGCCCTACATGCTACCTGTGCCAGGAAATGGACTCGTACCAATAGGACATCCTAATATGTTTCTTAATGGAGAAGAGATGACTTCATTAGAAGACATACGCAAGTGGTCGGTTGATGACGTCTACAACTTCATCAGTGAAATACCAAGCTGCGCTGAATACGCACAGACATTTAAAGACCACATGATTGATGGAGAGACATTACCTCTTCTTACAGAGGACCACCTCCTGGATACACTTGGTCTAAAGCTCGGGCCAGCACTTAAGATACGATCACAGTTGTCCCGACGGCTGGGTAACATGTTCTACAACATGATGAACATGCCTCTGCCCGTCTCCGGTCTGCAGCCTCCGCCTGAGAAAAGCGGGGACAGATCATCAGACATCAGCTCTCCCCTCAACTGCAACAGTGTGGAGCTGCTCAGCAGTCCCAGAGACACAGAGGCTCTTAAATCTACAGAGCCTGTAAGTGAAGCTGATAATCCTTCACCAAGCCAGATGAGTGAGACCACCTGAGAGACCATGCAGAACTGCTGGACTTCTTTTACCTCAAAATTCTTCACTGTTGAGATGCCTAATGCATAAGTTAGCCAGGCACTGACATTTCTGTACTGAATATAatgatcatatattttttaatattaatcataaatatattatgatcTGTGTTATGCAATAGGTTCAGAATGTGGCCTCCAACAGTTAGATTTTCGAATGcagaatatttctgtatatgtatattttgtaataagttAGCAAATCAATTACAAACAATTTTTGTCCTTACTGCAgccttttttattgtaaaattgtattttggtTTTTACTATAAACTTGAATTATTCTATATTGTCATGTGTTGTTTGCtatg
>XM_043219458.1
TCTGTGttgcatgcacacaaaaaaacacttgaaagacACATGCACATCTTGCTTGATTTCAACTGACACTGGAAAAGGAAGCTGGGCATTTAGGTGTCTTACCCTCGGTCTTAAAGTGCTAACAGAGGATTACTGAGGTAAATGTTGAAAGAGGTTTAGCCGCTGTGCTTAGGCAGTGCTCTTAATTACATTTCAGCAGAGTGTCCCGCGTGCAGTTGGACGAGAGATCATAGTGATGTCAGGTAAGGGGGGGCTTAAGCAGGCAGATAAAGCCAAGCTAATAGAGATAACATGAATCTGTAATTAAAGGTCTTTTTTAGTTAAGACCAGGAGCTGGCACTTGTTGGCCGAGGCTTTTGCGGCAGGACTGGAGACCTCAGAGCGCCGAGAGTTGTGGACTTTCTTGTTGCTGCTTCAGGTCTCATGCTCATTTCGGAATAATTTTGCTTGTTTGGAATGAATGCGTTAATATTTTCATCCTGACTGAGAGTTTGGACAGATTCCCACTTCTCTGGCAGACATTCAGAGTTTCACACTAAAAAGGAGTGACATTACGGAAATATCTTACACCTGAGTGAGTGAAGATAAAGCACAGGAGGAGTGAACAGTCAGAAAAGAGGCACTGTCATGACCCCTCGTGAACAGCTAAGGAAGATATCAGCGCTTGGAGAGCAAGGCGCTTTAGATGAGAAACACTGGTACCGACTAGTCAATGGAATGTCTGCTGGAGAGCTACGGCAAAGGCAGGAGCTCATGATGAGGAACCAGATGGCCATGGCTCCACAGATCTTGGCTCAGGGGCAGCAGAGACTGCAGGGTGTGCCTGCACAGTTTGATCCCCGCTTCATGGAGAGGGAACTGGTGCCACCCACTGAAATGGTATCAGCTGATGCTAGACAAATCCACATGGGTGCCCACCTGGGCCCACCTCTACCCCCAAACTCAAATGTTATTCCAGGCAGAGGATTCCCTGGCACAGGTTACGGATTCCTTCCAACTGAATCCATGGAGACGGTTGCTAGACGACAAGAGTTAATTCACAAACAGAACATAGCCAGgaTGGAGATGAATGCTATCCTGCACCAAAAAGAATTGGAGAATGCCCACCAAAAGGGCCTTATTGGGATGGAGAATCCCATGATGTACCAGGGCATTCAACCCAATCCAATGGCCTTCAGGGGACGCCAGCGACTCCCAGATGGACATGATGTGTTCGTCCATCGCACCGCCCTTGAAGACCTGCACGCTAACAGTCTCCTCATGTCGAGCCCTTACCCACCGATCAGCACACTGCAAAGGGAGCGAGGACGCAGGACAGGCAGAAGGACTGCCAATCATAAGAGCTCAGACAGCAGCATCACTCTCCCCaaaggccaatcagaagagaagAACATCGAGCAGAGTCCAGGAGCTGCCTCTGGGGAAGAGAAGGAAGTTGAAGGGAAAGGCGAAATGAGCAATGATGCTACCACCAGCAAACCACACCAAACCAAAGTAGAAACAGAGCTGTCTTCTGGATGTAGTAGGAAAGGTTTTAAGGAAGGAGAGCCAGGGATTCGCAAGACATGTATTAGTGGACAGGAGGGATGTGCAGAAGTCACCAACTGCAACGCTAGCACCAGTGACAAAGACATATCCAACCCTTGCTCGGCTTTCCAAGAAAAGTTTCTGTATCCGTCTGCTCCTGGCCCACTCACAGGGATGCCCTACATGCTACCTGTGCCAGGAAATGGACTCGTACCAATAGGACATCCTAATATGTTTCTTAATGGAGAAGAGATGACTTCATTAGAAGACATACGCAAGTGGTCGGTTGATGACGTCTACAACTTCATCAGTGAAATACCAAGCTGCGCTGAATACGCACAGACATTTAAAGACCACATGATTGATGGAGAGACATTACCTCTTCTTACAGAGGACCACCTCCTGGATACACTTGGTCTAAAGCTCGGGCCAGCACTTAAGATACGATCACAGTTGTCCCGACGGCTGGGTAACATGTTCTACAACATGATGAACATGCCTCTGCCCGTCTCCGGTCTGCAGCCTCCGCCTGAGAAAAGCGGGGACAGATCATCAGACATCAGCTCTCCCCTCAACTGCAACAGTGTGGAGCTGCTCAGCAGTCCCAGAGACACAGAGGCTCTTAAATCTACAGAGCCTGTAAGTGAAGCTGATAATCCTTCACCAAGCCAGATGAGTGAGACCACCTGAGAGACCATGCAGAACTGCTGGACTTCTTTTACCTCAAAATTCTTCACTGTTGAGATGCCTAATGCATAAGTTAGCCAGGCACTGACATTTCTGTACTGAATATAatgatcatatattttttaatattaatcataaatatattatgatcTGTGTTATGCAATAGGTTCAGAATGTGGCCTCCAACAGTTAGATTTTCGAATGcagaatatttctgtatatgtatattttgtaataagttAGCAAATCAATTACAAACAATTTTTGTCCTTACTGCAgccttttttattgtaaaattgtattttggtTTTTACTATAAACTTGAATTATTCTATATTGTCATGTGTTGTTTGCtatg

Function

symbol description
samd7 Predicted to enable chromatin binding activity and histone binding activity. Predicted to be involved in negative regulation of transcription, DNA-templated. Predicted to be active in nucleus. Orthologous to human SAMD7 (sterile alpha motif domain containing 7).

NR:

description
PREDICTED: sterile alpha motif domain-containing protein 7

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043219449.1 True 2575 mRNA 0.46 10 17253232 17259748
XM_043219458.1 False 2572 mRNA 0.46 10 17253232 17259748

Neighbor

gene id symbol gene type direction distance location
apoda.2 apoda.2,LOC107557457,LOC107706325,LOC107591449,LOC107684429,LOC107738179 coding upstream 3990 17247935 ~ 17249242 (+)
copa copa,LOC107591337,LOC107684398,LOC107706393,LOC107659416,LOC107557408 coding upstream 8799 17234058 ~ 17244433 (+)
pex19 pex19,LOC107591335,LOC107684402,LOC107659417,LOC107557446,LOC107738253 coding upstream 19369 17229880 ~ 17233863 (+)
slc1a8b slc1a8b,LOC107591333,LOC107706395,LOC107557414,LOC107738183,LOC107659353,LOC108444332,LOC105889468 coding upstream 34034 17211876 ~ 17219198 (+)
gadd45bb gadd45bb,LOC107738256,LOC107591447,LOC107706329,LOC107559165,LOC107659370,LOC107684432,LOC105906135 coding upstream 106167 17145373 ~ 17147065 (+)
sec62 sec62,LOC107684396,LOC107738178,LOC107706392,LOC107659352 coding downstream 1063 17260811 ~ 17268079 (+)
gpr160 LOC107738252,LOC107684395,LOC107591343,LOC107706324 coding downstream 17102 17276850 ~ 17280393 (+)
phc3 LOC107738171,LOC107591347,LOC107557539,LOC107706383 coding downstream 73948 17333696 ~ 17343059 (+)
myadmb si:dkeyp-66d1.7,LOC107706376,LOC107668989,LOC107591450,LOC107738251,LOC107659403,LOC107557715,LOC103040076 coding downstream 213790 17473538 ~ 17478940 (+)
ftr66 ftr66,LOC107668987,LOC107591451,LOC107706375,LOC107659402,LOC107557692 coding downstream 220956 17480704 ~ 17485854 (+)
G12985 NA non-coding upstream 46751 17204414 ~ 17206481 (+)
G12982 diras1b,LOC107659419,LOC107591332,LOC107557388,LOC107684404,LOC107738254,LOC108236225,LOC103373792 non-coding upstream 62625 17187117 ~ 17190607 (+)
G12972 NA non-coding upstream 90260 17161176 ~ 17162972 (+)
G12823 map1sb,LOC107738188,LOC107659421,LOC107591330,LOC107684407,LOC107706295 non-coding upstream 118344 17133077 ~ 17134888 (+)
G12818 NA non-coding upstream 129865 17123139 ~ 17123367 (+)
G12977 LOC107706390 non-coding downstream 12906 17272654 ~ 17273162 (+)
G12995 NA non-coding downstream 21512 17281260 ~ 17285830 (+)
G13007 insra,LOC107591352,LOC107558844,LOC107706379,LOC107738166,LOC107668948 non-coding downstream 126314 17386062 ~ 17387548 (+)
G13075 NA non-coding downstream 219976 17479724 ~ 17480102 (+)
G13076 NA non-coding downstream 220475 17480223 ~ 17480494 (+)
golim4b golim4b,LOC107591324,LOC107684437,LOC107706331,LOC107559125,LOC107659375,LOC107738257 other upstream 213329 17032139 ~ 17039903 (+)
LOC122361622 NA other upstream 476881 16724614 ~ 16776351 (+)
LOC122323293 NA other upstream 796700 16450132 ~ 16456532 (+)
G12531 LOC107722077,LOC107568983 other upstream 984435 16267043 ~ 16268797 (+)
dars2 dars2,LOC107720851,LOC107700987,LOC107558296,LOC107599907 other upstream 1377468 15860179 ~ 15875764 (+)
sppl2 sppl2,LOC107738168,LOC107706381,LOC107591351,LOC107659410,LOC107668984 other downstream 102497 17362245 ~ 17369102 (+)
G13114 tep1,LOC107591368,LOC107706362,LOC107659385,LOC107738210,LOC107591364,LOC107738151 other downstream 307093 17566841 ~ 17567916 (+)
G13111 LOC107738210,LOC107591364 other downstream 347504 17607252 ~ 17608092 (+)
LOC122325453 LOC107668965 other downstream 519591 17779339 ~ 17782364 (+)
G13137 NA other downstream 524431 17784179 ~ 17816764 (+)

Expression


Co-expression Network