rwdd3 (rwdd3)


Basic Information

Item Value
gene id rwdd3
gene name rwdd3
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 9281355 ~ 9285672 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043219524.1
TGTTTCTGTAGCAGTGTTTCTACACGGAATATGGTAATGTAGTACAACAGCAAACTGATCATCAGACGTAAACGTTATACAGTGTAAACATCATAAATCATAATGTCGAGATTTGTAGACGGGCTGCAAAATGTCGAGGGAAGCGTACGATGAAATATCCGTTTTATCCGCCATATACTGCGAACAGGACGAATTCGAGTTGCTAGAAGAGTCACCTGAGAGGGGACTGGTCTACCGAGTACACACACTGATTGAAAGAAACAATGAGAAGACACCGCTTGACCTTACGTTCCACGTCTGTCCTGACTACCCTCAGGACCCTCCGGATGTCAGCATCTCTTCCACCCGCTTATCAAGAAAACAGTGTCACGACCTGAGGCTGCATTTAATGGAAACGGCACGATCACTTCCACCAGAGCCCATGGTCCACGACTTAATACTGTGGCTTCAGGAAAACTTCTCAGACTTGATCGAAACGTCAAGCTGTGATTCAGCGGAGAACGGATCAGCATCCACAGAAGAAACCTGGACCGCTCTACTGCACTTAGATCACATGAGGTCCAAAGCAAAATACATCAAACTGATCGAAAAATGGACTTCAGAGCTGTGCCTCACTGGGAGACTCTTTACGGGGAAGCCGATATTGGTTCTTCTGCaaggaagaaaggaaaatattaaaGAATACATCCACTTTCAGAAGACGGTTAAAGTCGATGTCGATTCTTCAGGGAAACGCTGTAAGGAAAAGATGATGAGTGTCCTGTGCGAGATTCCACAGCCGGAGAAAGTAGCgttgtctacatttgaagtaaaagatattttttcacGCGATGACCTCGAAAGGGAGTTTGATCTCATTGGACTGACTGAGCTTTACAAGCGGTTTGTGTGCTCTCTGGTCTGacgtcacacacactctctccactgggtgGAGCCGGACTCTATTACTATCCACAGCTCTTTGATGCAATCCCGGCATAAAGGTGGTATATTCTCAGCTGTTACATATGACGACATGTCTCCTCATGGAGCTGAACTGGCGTAAATGCTcacaacaatataaaatgtgtggCAAAACTGGTTGTCATCGCTGAGGTGTGCGACAAAATCTCAACAACCCATTTTAATGGTGCAAAggaaataattcaatattattattatttacctgttttatatgaagagttctcccaaaaattaaaactgatgaACAGGTGAATGATGAgctgaaaaacatcacaagaaTCCGCTCAATCAGTTAACATCTTATGAAGTGGaaagctgtgtgtttatcttttttaaacTCTTGCTTCTGTCTAAAATGCCAAAACGGACAAAAAGTCAATTTCTACCGGAGGAAACGTTATTATTATGGATTACAGAGAGCTATTTTGCACAGAACAAGGactttacagttaaaatggATATGCGTTTAAATtgtcattccgacggcacccattcactttcagAAGGTTTTGAGCAACTGATATAAtgccacatttctccaaatctgctcgGGTGAAGCAAAAAACTCTTCTACGTCTCGAATCGTACATCTCGTTTTCATTTCtgggcgaactattcctttagggTGGCATTAGTGCTAATTTTATGTTGcgttattaactttttttgccCAAATTGACTGAAATGATATGcatgatatttaatatgtataaatttaaTGACAGCAGCATTCAACCTGTTGATGACGAGAAGATCCAAAGTTTAGCAGTAGATCCTTTGACCATCTGCACAAAGAGTCCCATTATTTATACAGCGTCTCGAATTTACGGACTTGATTAGTGAATTAAGTTTCTCATGTGTGGAATCTTTTGACTCCAAAGTAAGAGTGGTAGCAGATACGTCCCCAGTCATGCAGCTTTGAATTGCAATGTCGGAGTTAAAGCTCTAGAGGGCAAAAACAAGCCGCAGTCACCGCTTCAGTTTATTTAAGGCGAAATCAATTATCTCACCAGCTTCTCGCCGTAAGAACAAACACTAACTACAAAGTTTTCTTCTTAATGCTAAGAACAGAACTCGGTGTGTTTCTTTAATACAATTAAGACAAAGTAAATCTTTGGCGTGAGGATGCTCTTTAAATTAAACTTGTAAATTGAATTTGGCACACTCGCTGACCTTAAAGACAGCTTCAAACAAATTAAGACTCATCTTTTAATTTATGGTTACTTTTCTGCAGGTTAATAAGCGATGCGTTTTATAAGAGAGTGGTTATTCAACATCAACTTTAATTAGGCGAAAGGTACGAAGCTGTTCTGTTTTTAGCTCTGTTTTTCATACACCCACACGCAAGCGTTCTATAGCTGGCTGTCATCTTATGTTTATCTTATACACATTGAGCAGACAGCTGTTGCCTAGGAGGGTCCAGAAGCAATTGAcatgaaattactttttttaaacataattaacaAGGCTTAATGAAAATCACCTCCTCGCCCTTTACAATGATCCACTCTGAACTATAAATTCACCTTGCCTGACCTTTTCCCTGACATGTTCTTACAAAACAACACTGCTTGTTAAATGTCATCCACTCAGTGGCATTTACTTGTATAAAACAGGGCTTTGATCCGGAGGAGAAGCACACTTTCCTACCTTTCCTAGTCCAGGAGGCCACGCTCGGCGACCCCACGCACCTGTTAcctgttgaatattttaattacggcccattaaaatgtacaaaggttaggttaaacttaaaatttattggccaaatgacattttaatttggcAAATTAACGCTACATCTATGACTTttgttctttgcttttttttttttttctcgatcTCGCTATAAGCGGCGATTTGGAATTCTGTCCGACCGCCGAAGACCGGTTAAATCAATGCAGGGGCACGAATGAGTCGAAGCGATGCGGCCCTCCGTGTCCAACTTTACCCCGGGTCCATGCAGTATGAACTCTGTCACAAGCAGGCCCTCGACAGCCGGATCTCGTGTCGCACAAACCTCAGTCTGGAGGATCACGCtactttaatttcaaaataaatagaaaagggTCAATCCTGCTGTGCACTGCATTTTCATACGGCACACGCCTTAATATTGgataatgcattaacatttttaaagaaagggAAATCgtattacttttcatttaaatttaatataagtaattaaatcataaatcatttggagtggttgttattattttatttgaatcatttaatttCACTAATTGTGACTgatattatttgcttatttatctACCATGTTGTCAAGtgctataaaacttttaatacacacacacacacacacacacacacacacacacatatatatatttgttacaaaaagTTATATTAAACAAAGAAGCTGTAAAGGGAAACTGATGACATTTATGATCTCAGTTGgtttttctcactttttcacacagcagaaatgtaaatgtacaccGTGTGATATAAGCAAAGGAGGTTTGTTTCCACCCTGTTAAGTTCTATAGTACTTTTCTtgcaattttgtacatttttaagttataataaataatttaaagtgcCTGGGCATATCTGTTACCCTTTTATAGCCTATTTCcttaaataacatacattttgtaaGTAAAAGAGTTGAACCGGGAATGACCCATAACTTGTAAAGTACACATtacaaaagacaaataaatggaTGAGGCTTAATAAAATTCTCTCGTGGATAATCA
>XM_043219534.1
TGTTTCTGTAGCAGTGTTTCTACACGGAATATGGTAATGTAGTACAACAGCAAACTGATCATCAGACGTAAACGTTATACAGTGTAAACATCATAAATCATAATGTCGAGATTTGTAGACGGGCTGCAAAATGTCGAGGGAAGCGTACGATGAAATATCCGTTTTATCCGCCATATACTGCGAACAGGACGAATTCGAGTTGCTAGAAGAGTCACCTGAGAGGGGACTGGTCTACCGAGTACACACACTGATTGAAAGAAACAATGAGAAGACACCGCTTGACCTTACGTTCCACGTCTGTCCTGACTACCCTCAGGACCCTCCGGATGTCAGCATCTCTTCCACCCGCTTATCAAGAAAACAGTGTCACGACCTGAGGCTGCATTTAATGGAAACGGCACGATCACTTCCACCAGAGCCCATGGTCCACGACTTAATACTGTGGCTTCAGGAAAACTTCTCAGACTTGATCGAAACGTCAAGCTGTGATTCAGCGGAGAACGGATCAGCATCCACAGAAGAAACCTGGACCGCTCTACTGCACTTAGATCACATGAGGTCCAAAGCAAAATACATCAAACTGATCGAAAAATGGACTTCAGAGCTGTGCCTCACTGGGAGACTCTTTACGGGGAAGCCGATATTGGTTCTTCTGCaaggaagaaaggaaaatattaaaAAGACGGTTAAAGTCGATGTCGATTCTTCAGGGAAACGCTGTAAGGAAAAGATGATGAGTGTCCTGTGCGAGATTCCACAGCCGGAGAAAGTAGCgttgtctacatttgaagtaaaagatattttttcacGCGATGACCTCGAAAGGGAGTTTGATCTCATTGGACTGACTGAGCTTTACAAGCGGTTTGTGTGCTCTCTGGTCTGacgtcacacacactctctccactgggtgGAGCCGGACTCTATTACTATCCACAGCTCTTTGATGCAATCCCGGCATAAAGGTGGTATATTCTCAGCTGTTACATATGACGACATGTCTCCTCATGGAGCTGAACTGGCGTAAATGCTcacaacaatataaaatgtgtggCAAAACTGGTTGTCATCGCTGAGGTGTGCGACAAAATCTCAACAACCCATTTTAATGGTGCAAAggaaataattcaatattattattatttacctgttttatatgaagagttctcccaaaaattaaaactgatgaACAGGTGAATGATGAgctgaaaaacatcacaagaaTCCGCTCAATCAGTTAACATCTTATGAAGTGGaaagctgtgtgtttatcttttttaaacTCTTGCTTCTGTCTAAAATGCCAAAACGGACAAAAAGTCAATTTCTACCGGAGGAAACGTTATTATTATGGATTACAGAGAGCTATTTTGCACAGAACAAGGactttacagttaaaatggATATGCGTTTAAATtgtcattccgacggcacccattcactttcagAAGGTTTTGAGCAACTGATATAAtgccacatttctccaaatctgctcgGGTGAAGCAAAAAACTCTTCTACGTCTCGAATCGTACATCTCGTTTTCATTTCtgggcgaactattcctttagggTGGCATTAGTGCTAATTTTATGTTGcgttattaactttttttgccCAAATTGACTGAAATGATATGcatgatatttaatatgtataaatttaaTGACAGCAGCATTCAACCTGTTGATGACGAGAAGATCCAAAGTTTAGCAGTAGATCCTTTGACCATCTGCACAAAGAGTCCCATTATTTATACAGCGTCTCGAATTTACGGACTTGATTAGTGAATTAAGTTTCTCATGTGTGGAATCTTTTGACTCCAAAGTAAGAGTGGTAGCAGATACGTCCCCAGTCATGCAGCTTTGAATTGCAATGTCGGAGTTAAAGCTCTAGAGGGCAAAAACAAGCCGCAGTCACCGCTTCAGTTTATTTAAGGCGAAATCAATTATCTCACCAGCTTCTCGCCGTAAGAACAAACACTAACTACAAAGTTTTCTTCTTAATGCTAAGAACAGAACTCGGTGTGTTTCTTTAATACAATTAAGACAAAGTAAATCTTTGGCGTGAGGATGCTCTTTAAATTAAACTTGTAAATTGAATTTGGCACACTCGCTGACCTTAAAGACAGCTTCAAACAAATTAAGACTCATCTTTTAATTTATGGTTACTTTTCTGCAGGTTAATAAGCGATGCGTTTTATAAGAGAGTGGTTATTCAACATCAACTTTAATTAGGCGAAAGGTACGAAGCTGTTCTGTTTTTAGCTCTGTTTTTCATACACCCACACGCAAGCGTTCTATAGCTGGCTGTCATCTTATGTTTATCTTATACACATTGAGCAGACAGCTGTTGCCTAGGAGGGTCCAGAAGCAATTGAcatgaaattactttttttaaacataattaacaAGGCTTAATGAAAATCACCTCCTCGCCCTTTACAATGATCCACTCTGAACTATAAATTCACCTTGCCTGACCTTTTCCCTGACATGTTCTTACAAAACAACACTGCTTGTTAAATGTCATCCACTCAGTGGCATTTACTTGTATAAAACAGGGCTTTGATCCGGAGGAGAAGCACACTTTCCTACCTTTCCTAGTCCAGGAGGCCACGCTCGGCGACCCCACGCACCTGTTAcctgttgaatattttaattacggcccattaaaatgtacaaaggttaggttaaacttaaaatttattggccaaatgacattttaatttggcAAATTAACGCTACATCTATGACTTttgttctttgcttttttttttttttctcgatcTCGCTATAAGCGGCGATTTGGAATTCTGTCCGACCGCCGAAGACCGGTTAAATCAATGCAGGGGCACGAATGAGTCGAAGCGATGCGGCCCTCCGTGTCCAACTTTACCCCGGGTCCATGCAGTATGAACTCTGTCACAAGCAGGCCCTCGACAGCCGGATCTCGTGTCGCACAAACCTCAGTCTGGAGGATCACGCtactttaatttcaaaataaatagaaaagggTCAATCCTGCTGTGCACTGCATTTTCATACGGCACACGCCTTAATATTGgataatgcattaacatttttaaagaaagggAAATCgtattacttttcatttaaatttaatataagtaattaaatcataaatcatttggagtggttgttattattttatttgaatcatttaatttCACTAATTGTGACTgatattatttgcttatttatctACCATGTTGTCAAGtgctataaaacttttaatacacacacacacacacacacacacacacacacacatatatatatttgttacaaaaagTTATATTAAACAAAGAAGCTGTAAAGGGAAACTGATGACATTTATGATCTCAGTTGgtttttctcactttttcacacagcagaaatgtaaatgtacaccGTGTGATATAAGCAAAGGAGGTTTGTTTCCACCCTGTTAAGTTCTATAGTACTTTTCTtgcaattttgtacatttttaagttataataaataatttaaagtgcCTGGGCATATCTGTTACCCTTTTATAGCCTATTTCcttaaataacatacattttgtaaGTAAAAGAGTTGAACCGGGAATGACCCATAACTTGTAAAGTACACATtacaaaagacaaataaatggaTGAGGCTTAATAAAATTCTCTCGTGGATAATCA

Function

symbol description
rwdd3 Predicted to be involved in positive regulation of protein sumoylation. Predicted to act upstream of or within negative regulation of NF-kappaB transcription factor activity and positive regulation of hypoxia-inducible factor-1alpha signaling pathway. Predicted to be located in cytoplasm and nucleus. Is expressed in nervous system and pancreatic system. Orthologous to human RWDD3 (RWD domain containing 3).

NR:

description
TC1-like transposase

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043219524.1 True 3692 mRNA 0.39 4 9281355 9285672
XM_043219534.1 False 3674 mRNA 0.39 4 9281355 9285672

Neighbor

gene id symbol gene type direction distance location
LOC122324815 hccsa.1,LOC107594665,LOC107710606,LOC107700523 coding upstream 61 9277763 ~ 9281294 (+)
si:dkey-10f21.4 tmem56,si:dkey-10f21.4,LOC107710631,LOC107730492,LOC107570488 coding upstream 3879 9255385 ~ 9277476 (+)
abcd3b abcd3b,abcd3,LOC107564533,LOC107730494,LOC107680052,LOC106590647 coding upstream 33064 9239632 ~ 9248291 (+)
tecrl2b tecrl2b,LOC107564537,LOC107745691 coding upstream 101048 9173853 ~ 9180307 (+)
col11a1b col11a1b,LOC107680048,LOC107594685,LOC107710593,LOC107564536,LOC107700498,LOC107745694 coding upstream 126921 9087694 ~ 9154434 (+)
ptbp2b ptbp2,ptbp2b,LOC107718150,LOC103030091,LOC108442283,LOC107570490 coding downstream 36030 9321702 ~ 9333327 (+)
plppr4a plppr4,plppr4a,LOC107722652,LOC107589875,LOC107718168,LOC107682771 coding downstream 237356 9523028 ~ 9539523 (+)
palmda palmd,LOC107722597,LOC107693751,LOC107677747,LOC107589899 coding downstream 268559 9554231 ~ 9562237 (+)
si:ch211-153l6.6 LOC107722596,LOC107693750,LOC107594655 coding downstream 277559 9563231 ~ 9570989 (+)
agla agl,LOC107722579 coding downstream 292383 9578055 ~ 9600236 (+)
G10466 NA non-coding upstream 64691 9215505 ~ 9216664 (+)
G10446 amy2a,LOC107700520,LOC107594668,LOC105896008 non-coding upstream 223496 9057090 ~ 9057859 (+)
G10445 NA non-coding upstream 225110 9055723 ~ 9056245 (+)
G10433 NA non-coding upstream 340169 8939969 ~ 8941186 (+)
G10431 NA non-coding upstream 351282 8929504 ~ 8930073 (+)
G10557 NA non-coding downstream 168694 9454366 ~ 9454745 (+)
G10571 NA non-coding downstream 200505 9486177 ~ 9572793 (+)
G10581 LOC107722512,LOC107693701,LOC107594678 non-coding downstream 291499 9577171 ~ 9577406 (+)
G10604 NA non-coding downstream 316694 9602366 ~ 9603843 (+)
G10674 kifap3b,LOC107693735,LOC107564707,LOC107722509,LOC107718166 non-coding downstream 539943 9825615 ~ 9826220 (+)
olfm3b olfm3b,LOC107700521,LOC107710604,LOC107745696,LOC107680049 other upstream 109440 9162611 ~ 9171915 (+)
G10212 NA other upstream 1173578 8106865 ~ 8107777 (+)
G10108 NA other upstream 1698970 7504622 ~ 7582385 (+)
gng12a gng12a,LOC107700509,LOC107716954,LOC107551713 other upstream 1981254 7285670 ~ 7300101 (+)
lrrc53 LOC107700485,LOC107588905,LOC107716924 other upstream 2175563 7098303 ~ 7105792 (+)
arpc5a arpc5a,arpc5,LOC107722639,LOC107693740,LOC107564704,LOC107677751,LOC107718183 other downstream 460898 9746570 ~ 9751212 (+)
znf414 LOC107722538,LOC107564712,LOC107693731,LOC107691619,LOC107718126 other downstream 625956 9911628 ~ 9916861 (+)
selenof selenof,sep15,LOC107693704,LOC106598901 other downstream 872860 10158532 ~ 10161809 (+)
lyrm4 lyrm4,LOC107718092,LOC107688446,LOC107722638,LOC107689406,LOC107688520 other downstream 1377057 10662729 ~ 10665110 (+)
G10979 LOC107722568,LOC107585289,LOC107688450,LOC107718087,LOC107689412 other downstream 1425458 10711130 ~ 10718194 (+)

Expression


Co-expression Network