trpa1a (trpa1a,LOC107550712,LOC107732569,LOC107664053,LOC107751364)


Basic Information

Item Value
gene id trpa1a
gene name trpa1a,LOC107550712,LOC107732569,LOC107664053,LOC107751364
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 14105263 ~ 14113735 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043219783.1
ATgactaaaaaaacagaaacgaCACATATCTCCAGAACGGAGTCAAAATCTAGACAACAGTCATACGACAGCGTGATGGATGGGGACGAGAGCAACCAGATATCTGCCAATGTTTTTGAGTGGACTAAGCAAGGAAACATAGACGCTCTGGAGAAGCACACCAGGTACCTGGACATACGTGACAACATCGGTGCCAGCCCAATGCACTACGCCGCATCCATGGGACACTTTCGCATCGTCAGACTAATAGTGCAGTTCACTGGAACACAAGAGCTCAATGCCAGGGATGAGGAAGGGAATACCCCTCTTCATTGGGCTGTGCAGAAGGACCAGCCAGGAAGCTGCTCTGTGCTTCTGACTCAGGGAGCAGATCCTAACATCCTAAACAACAGCCAACTGTCACCGCTACATATGGCGGTCAGCCTGGGTAAAAATTTTGTGTTAGAGCAACTTGTCTCACATAAACAAACTGATGTGAACCTGGAAGGGGACTTGGGAAACACCCCTGTCATTTTAGCTGCTTCTTTGGACAACCACGAGGCTCTGGTCATACTGTACAAGCATGGTGCAAAGTTTTGTCGTCAGAACAAGCTTGGCCATTTTCCGATTCATGCTGCTGCTTTTGCCGGAGCTAAGAAATCTATGGAGGTCATTCTTCTGAAAGGAGAAGAAGTTGGACTGTCTATTGACACCCATATAAACTACGTGGATAAATCTTGCAGCAGTCCGCTCCACCTGGCCGTACGTGGAGGAAATCTCGACGTCATTAAACTCTGCATTGCGTATGGAGCAAAAATTGAACAGCAGCAGTGTGATAAATCCACTGCTCTTCATTTTGCGTGCAGTCAAGGTGCCACTGAGGTTGTTAAAGTCATGCTCTCGGCTTATCATAAATTGTGTGACCTTATCAACATCACTGATGGGGCCAACCAGACACCTCTACATAAAGCAgccatttttgatcattttgaacTCTCGGAGTACCTTATCTCACAGGGTGCTGACATTGACTTTGTTGACTGCAAAGGCCATTCTCCACTTCTTCTGGCAACAAGCTGCGGAGCATGGAGAACAGTCAATCTGCTCCTCTCCCATGGAGCTGAGctgaagaaaaaagacaaatccGGTTGCAACTTCTTGCATTTGGCTATCTTGCAACCCAGGGGTTTGAAAAACCTGCCCACAGAGGTACTGCAGCACGAGAGCGTGAGAGAGCTTCTCAATGATGAGGATATTGAGGGCTGCACTCCCCTCCATTACGCCTGCCGACTGGGAATACCAGAGTCAGTGAAGAACATGCTGGGATTAGAGGTCTCGCTGGACCAGAAGTCCAAACAGAAGAAATCTGCACTTCATTTTGCGGCAGAATATGGGAGGATCAACACTTGCCACAGACTTCTGGAGATGGTGACAGACACGAGACTGCTGAATGAGGGGGATGAGAAAGGACTGACCCCGCTGCATCTGGCCTCTCGTGGAGGTCACGTTAAAGTCGTTGAGCTTCTCCTACGCAAGGGAGCGCTGTTTCACAGtgacTACAGAGGATGGTCATGCCTTCATCATGCTGCGTCTGAAGGATACACGCAGACCATGGACACTTTGCTGACATCTAACATCAAACTTCTGAACAAAACCGATGGAGATGGGAACACGGCTTTGCATCTGGCCGCCAGGGCAGGTCATGTGGCTGTAGTGAGACTGCTTTTATACAGAGGGGCCAAGATCATCCTTAACAAGAACGATGCCTCTTTCCTGCACGAGGCCGTACATAATGGGAGGAAGGAAGTCACCAACACGGTGATCGAGAGCGAAAGATGTGAAGAGGCGATGACTACGTACAAACCAAACTCAACAAAACGTTGCATTGTCATGGACATGATTGAGTTTCTTCCGGAGTCCTTTAAACATCTTCTAGACACTTGCATAAAGGAATCAGAGGAGGATGTGAACAGCACCAATTACTATATTGAGTACAATTTCAGGTGGCTTCAGCATCCTCTGCAAAACCTGAAAAAGACAGGTTTGGGAAAAGACAACACCTACAAGCCTCTCAGCGCACTAAATGCTATGGTGAATTTTAATCGCGTCACTTTGCTGACACATCCAGTATGCAAGAAATATTTGGAGATGAAATGGAATGCCTATGGGATCAAAGCACATCTGCTCAATATGACTGTGTATGCGCTGGGGGTGTTTCCACTGACGTATCTCATTGTGAACCTGAAACCCACATTAGTCACTGCAAGAAATGTCACATCAGTCAACATGGTCTGCACGTCCCTGTACAAGCAATCCTATATAGTCACAACAAGCATGCTCTTGGTTCTTGCAATGAATATGTATGCAGTTGGGAAAGAGATCTTGCAAATGACTCAGCAGCGGCTGAATTATTTGCGGGATCTGTCAAACTACATGGACTGGGGCGCTGCGATCTGTTCTCTGGTGTTCGTGGTGCCGATGCTGCTGAACGCCAAGAGCTCCTGGCACTGGCAGGCTGGGGCACTGGCAGCTCTGGCCTCCTGGATGAACCTcctcctctacctccagcgGTTTGAACGGATTGGTATATATGTGGTAATGTTTCGGGAGATCTCACGGACGCTGTTGAGCATTATTGTGCTGTTCTTCTACTTGATACTGGGATTTGCTTTGGCCTTCTATGCCTTGATGATCGAGCAGCAACATTTTGGAAGGATGTTCCTATCACTGCTGCAGACCTTTGTCATGATGGTTGGAGAAATCAACTACCAGGACAACTTCTTGAAACCCTTCCTACAAGGAGACCTTCCTTTCCCCCTTTTGACACTGGCGATCTTTATTTGGTTTGTCTTACTCGTGCCTATTCTCCTGATGAACCTTCTGATTGGTTTGGCTGTTGGAGACATAGCAGAGgttcaaacaaatgcatgcttGAAGAGGATTGCAATGCAGATTGAACTTCACACTAATCTGGAGGAGCGTCTTCCTTATTGGTTTATGAAACGGGTGGACCAGGTCACCATCAAGGAGTTCCCAAACAGATGCTTCAGTGGAAAGAAAAGATGGTTTTTCGGTGTGAATGAGGTGAGGAGGTCTAGGACCCGTCTCAGTCCTACCATCCACCAGTTAACTCCACTGGAAAGGGAGCTAACCAAACAGAAATACAGGCTGAAGGAGATGTCAGAGACCATGGAAAAGCAACACAACCTGCTAAAGCTCGTAGTGCAGAAGATGGAGATCAGCTCAGAAGCTGAAGAACACGACGGACCCCCGGTCTTTCAGGAGCTGAAAGAGAAGCTCCTTACCAGGAGCAAATGGGGTCCACTGCTCAGGGCAGTGACCGCCAGAAAGAAGGGAGTCTGCAAATTCATGAAAACGGCATGAACAAgccattgttttaaatgagatgTAGTATTTACTCAAACTGTGATGATGTGGCCAATATTTAGTGGTATGACTATGCTTCGATACAACAACCAAGGCTGAAACCAAATATCAAGCATCTGGAATTGTGTTTACATCCAACGTGTTAAATGTTACAAAGTGTGactgtaaatttaaattcaacCAAAGGCAAGTCCGGTTTTATTACTGAAAAATCCATGTACATTTGTTGTGTTGCGTTTATTCATTCAATAAACTGTGTGGATCATGCAAATGAGAAATGCttgcacattttcattaaaattattcattctCATTCTTTAAATTTGTGCATCAGTCACAGTTTTTCAGAGCAGATAATTAACTACTTGTTACCGATTAGTAgcggctttaaaaaaaaaacgtaaaaataatt

Function

symbol description
trpa1a Enables calcium-release channel activity and mechanosensitive ion channel activity. Acts upstream of or within detection of chemical stimulus; detection of mechanical stimulus involved in sensory perception; and ion transmembrane transport. Predicted to be integral component of membrane. Is expressed in integument; keratinocyte; and vagal ganglion 4. Human ortholog(s) of this gene implicated in familial episodic pain syndrome 1. Orthologous to human TRPA1 (transient receptor potential cation channel subfamily A member 1).

NR:

description
PREDICTED: transient receptor potential cation channel subfamily A member 1-like

GO:

id name namespace
GO:0070542 response to fatty acid biological_process
GO:0034220 ion transmembrane transport biological_process
GO:0009593 detection of chemical stimulus biological_process
GO:0050960 detection of temperature stimulus involved in thermoception biological_process
GO:0050974 detection of mechanical stimulus involved in sensory perception biological_process
GO:0016021 integral component of membrane cellular_component
GO:0015276 ligand-gated ion channel activity molecular_function
GO:0008381 mechanosensitive ion channel activity molecular_function

KEGG:

id description
K04984 TRPA1, ANKTM1; transient receptor potential cation channel subfamily A member 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043219783.1 True 3778 mRNA 0.46 27 14105263 14113735

Neighbor

gene id symbol gene type direction distance location
shhb shhb,LOC107586383,LOC107751367,LOC107686079,LOC107664041,LOC107732558,LOC107550703 coding downstream 21799 14077992 ~ 14083464 (-)
cnpy1 LOC107550718,LOC107686078,LOC107586387,LOC107751369 coding downstream 53630 14042928 ~ 14051633 (-)
paxip1 paxip1,LOC107686023,LOC107550719,LOC107664085,LOC107584425 coding downstream 97366 13994788 ~ 14007897 (-)
c2h10orf67 LOC107751365,LOC107585965,LOC107686066,LOC107550695 coding downstream 176893 13911856 ~ 13928370 (-)
LOC122327014 LOC107688502,LOC107729325,LOC107584893,LOC107674018,LOC107732516 coding downstream 388984 13566182 ~ 13716279 (-)
rpl7 rpl7,LOC107584398,LOC107686030,LOC107664057,LOC107550715 coding upstream 22496 14136231 ~ 14139323 (-)
LOC122328947 NA coding upstream 24325 14138060 ~ 14138149 (-)
ube2wa ube2w,LOC107585923,LOC108280505,LOC107751351,LOC107686032,LOC107664038,LOC108435722 coding upstream 32298 14146033 ~ 14149244 (-)
elocb TCEB1,tceb1,tceb1b,LOC108426597 coding upstream 36435 14150170 ~ 14151983 (-)
jph1b jph1b,jph1,LOC107746914,LOC107550709,LOC107686034,LOC107584332,LOC108435725,LOC108280498 coding upstream 44599 14158334 ~ 14179577 (-)
G11958 NA non-coding downstream 280 14101518 ~ 14104983 (-)
LOC122357571 NA non-coding downstream 74998 14016345 ~ 14030265 (-)
G11794 LOC101886882 non-coding downstream 312386 13748940 ~ 13792877 (-)
G11792 NA non-coding downstream 403952 13694319 ~ 13701311 (-)
G11770 NA non-coding downstream 632866 13471698 ~ 13472397 (-)
G11940 LOC107751355,LOC107686027,LOC107584387,LOC107550714,LOC107732566,LOC107664055 non-coding upstream 25747 14139482 ~ 14141857 (-)
G11966 NA non-coding upstream 75461 14189196 ~ 14189598 (-)
LOC122357595 NA non-coding upstream 76741 14190476 ~ 14191109 (-)
G11969 NA non-coding upstream 79840 14193575 ~ 14193812 (-)
G11982 NA non-coding upstream 135268 14249003 ~ 14250540 (-)
LOC122328470 ptbp1a,ptbp3,LOC107602545,LOC107674042,LOC107732511,LOC107584874,LOC107558691,LOC107658670,LOC107744247,LOC107729315,LOC107688524 other downstream 540898 13553773 ~ 13564365 (-)
LOC122323969 cahz,LOC107550722,LOC107755757,LOC107664098,LOC107686019,LOC107585971,LOC107751363,LOC108432254 other downstream 635000 13315229 ~ 13470263 (-)
xkr4 xkr4,zgc:123035,LOC107728991,LOC107679338,LOC107714844,LOC107674319,LOC106569249 other downstream 1267170 12789524 ~ 12838093 (-)
hltf hltf,LOC107688483,LOC107722619 other downstream 2490325 11592441 ~ 11614938 (-)
G11317 pde4ca,pde4c,LOC107722623,LOC107680260 other downstream 2527747 11576391 ~ 11577516 (-)
adcyap1b adcyap1b,adcyap1,LOC107713980,LOC107686049,LOC107751550,LOC107664073 other upstream 465260 14578995 ~ 14610266 (-)
faim2a faim2a,LOC107718029,LOC107701017,LOC107556958,LOC107657438,LOC107709826 other upstream 1006852 15120587 ~ 15127491 (-)
smarcd3a smarcd3a,smarcd3,LOC107657439,LOC107599876,LOC107709803,LOC107556978,LOC107718026,LOC103039772 other upstream 1020236 15133971 ~ 15153989 (-)
ccdc24 ccdc24,LOC107657456,LOC107599905 other upstream 1445928 15559663 ~ 15579706 (-)
pappa2 pappa2,LOC107722077,LOC107568983,LOC107678935,LOC107726923,LOC107658303,LOC107558342 other upstream 2110988 16224723 ~ 16268835 (-)

Expression


Co-expression Network