palmda (palmd,LOC107722597,LOC107693751,LOC107677747,LOC107589899)


Basic Information

Item Value
gene id palmda
gene name palmd,LOC107722597,LOC107693751,LOC107677747,LOC107589899
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 9554231 ~ 9562237 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043219859.1
GCGAGTCTTGCCTACAGCACCTGCGCGCGCCTAAATGCGAGCCGCTCGACGGCTGCGCGTGAACTCACAAAACCCTCATGGATATCCGATCGTCTTCAGCCGCCcgAGGCAGGATGGAAGAAGCAGAACTCTTAAAGGAGCGCCTCCAAGCTATTACGagtaagaaaaaaattcaagagGAAATTGCTCACAAACGGCTTGAGATTGACAGGGAGAAACTAAAGCTTCAACATGTCAAGAAAAGATCCATGAGAGATCTGTGGCTCATGGATGGGATGAACAGCAGTAATGCGGAGGAAACGCAAAAAGCTACTGAAGATGCGCAACAAACTAAACACCTCAAGAGCACCATACATCGGATAGAGAAAGAGATCGAAGCGTTGGAGAGAGAAGAAATGAACATCTCAACAAATGAGGGGCTGATTCTGAAGAGGCTCAAAGCCATTGAAAAGTCTCCAGAGGACATCATTAAGGCAGTGAATGCAGATTTCACATCAGAGCCCATCTATATTCATTCAACAATTCCAAACATGCAAACGCTTAGCACATCCTTATTAAATCAGAGGAAGAAACAAGACCTGGAAACCGAAGCTAAAACTGACCAAGCCAAACCTGCTATGTTTGCCATGGAAATCAACGTTCAGAAGGACTTGCGCACAGGTGAAAGCCAAGTCCTCTCCACCTCCACCATTTCTCCCCAAGAGCTCCAGCAGAAGGGCATCAAAGTCTACGACGATGGCAGGAAGTCTGTCTACGCCCTGCGTACGGACGGCCTCCAGCCCGGTGCGAACGGAGTGGATGAACTGAGTCCCACTGAGGTCGAGGAGCTGCTGAGACAGGCAtctgagaagaagaagagatcCAATCAGGTTCAGGTTCCCTACAACCTCTCCCACGAGGCCAGCGAAACCAGAGAGAGCCACAAATCCAACGGAAACCAAGACCCATACAGCGTTGACTTATCGGCGTGGCCTGAGCTCGTGTACAATGATGGCGTGTGCTATCCAGAGGACGTGGGACATGGGCTTCCTCTCCTGCCGATGCCTAATTATAACGACAGACCAGAAGAATACTATCACAACAGAGGAGAAAGACACACGCGTGGACAATATTACAACCAAAGAGAGAACCACAAGGGAATGCGACTTCTGGATTGTGACATCAGAAACCACAGCCCGTGTTCGGCCTACTCCGAGGACTCCAAACTCAGCGTCCTGAACGCCATGCCATCGGACGAGCCCGTCACCATGATCTTCATGGGATACCAGAACGCCGAAGATGACAGCCAGAGCTACGAGGGCTCGATTCGGGCAGAGCTGGTGATCATTGGAGACGGTGAAGATGAAGCGAGCAAGAGCTTCAACACCCAACAAAACTCCAGTCCCAGCAACGCCTGCTCTGCGGGACGGAAGGGCAAAAGAGACGGCACGGAGGACCCATCCGCTACAGGTACCCCAAAGATTAAAAAGGTCAAAAGGAGACACAAGCCCTGCTGTGTGTTGATGTAG
>XM_043219866.1
GCGAGTCTTGCCTACAGCACCTGCGCGCGCCTAAATGCGAGCCGCTCGACGGCTGCGCGTGAACTCACAAAACCCTCATGGATATCCGATCGTCTTCAGCCGCCcgAGGCAGGATGGAAGAAGCAGAACTCTTAAAGGAGCGCCTCCAAGCTATTACGagtaagaaaaaaattcaagagGAAATTGCTCACAAACGGCTTGAGATTGACAGGGAGAAACTAAAGCTTCAACATGTCAAGAAAAGATCCATGAGAGATCTGTGGCTCATGGATGGGATGAACAGCAGTAATGCGGAGGAAACGCAAAAAGCTACTGAAGATGCGCAACAAACTAAACACCTCAAGAGCACCATACATCGGATAGAGAAAGAGATCGAAGCGTTGGAGAGAGAAGAAATGAACATCTCAACAAATGAGGGGCTGATTCTGAAGAGGCTCAAAGCCATTGAAAAGTCTCCAGAGGACATCATTAAGGCAGTGAATGCAGATTTCACATCAGAGCCCATCTATATTCATTCAACAATTCCAAACATGCAAACGCTTAGCACATCCTTATTAAATCAGAGGAAGAAACAAGACCTGGAAACCGAAGCTAAAACTGACCAAGCCAAACCTGCTATGTTTGCCATGGAAATCAACGTTCAGAAGGACTTGCGCACAGGTGAAAGCCAAGTCCTCTCCACCTCCACCATTTCTCCCCAAGAGCTCCAGCAGAAGGGCATCAAAGTCTACGACGATGGCAGGAAGTCTGTCTACGCCCTGCGTACGGACGGCCTCCAGCCCGGTGCGAACGGAGTGGATGAACTGAGTCCCACTGAGGTCGAGGAGCTGCTGAGACAGGCAtctgagaagaagaagagatcCAATCAGGTTCAGGTTCCCTACAACCTCTCCCACGAGGCCAGCGAAACCAGAGAGAGCCACAAATCCAACGGAAACCAAGACCCATACAGCGTTGACTTATCGGCGTGGCCTGAGCTCGTGTACAATGATGGCGTGTGCTATCCAGAGGACGTGGGACATGGGCTTCCTCTCCTGCCGATGCCTAATTATAACGACAGACCAGAAGAATACTATCACAACAGAGGAGAAAGACACACGCGTGGACAATATTACAACCAAAGAGAGAACCACAAGGGAATGCGACTTCTGGATTGTGACATCAGAAACCACAGCCCGTGTTCGGCCTACTCCGAGGACTCCAAACTCAGCGTCCTGAACGCCATGCCATCGGACGAGCCCGTCACCATGATCTTCATGGGATACCAGAACGCCGAAGATGACAGCCAGAGCTACGAGGGCTCGATTCGGGCAGAGCTGGTGATCATTGGAGACGGTGAAGATGAAGCGAGCAAGAGCTTCAACACCCAACAAAACTCCAGTCCCAGCAACGCCTGCTCTGCGGGACGGAAGGGCAAAAGAGACGGCACGGAGGACCCATCCGCTACAGCATTACAGATACGGATGGAGAAACTGGGCCAAACTGCGTAGCACGCACATTTTGCGTAAGTCACACTCTGGGAACCCCGAGACTGTTTTGCGTGATTGTCCAGAGAGGCCGGAGAGACAAGAAACACGAGCCAGCATCTCAGAGGAGTCTTCTGAATGTGAAATGAGGATGTGtcattaacaataatatttcagtaatctttacgttttttttttttattcctatacatgatttaagtgcatttttaatgacaatagtggtggaataaa

Function

symbol description
palmd Predicted to be involved in regulation of cell shape. Predicted to be located in dendrite. Predicted to be active in cytoplasm.

NR:

description
palmdelphin-like

GO:

id name namespace
GO:0008360 regulation of cell shape biological_process
GO:0016020 membrane cellular_component

KEGG:

id description
K16519 AKAP2; A-kinase anchor protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043219859.1 False 1508 mRNA 0.51 8 9554231 9559890
XM_043219866.1 True 1718 mRNA 0.49 9 9554231 9562237

Neighbor

gene id symbol gene type direction distance location
plppr4a plppr4,plppr4a,LOC107722652,LOC107589875,LOC107718168,LOC107682771 coding upstream 14708 9523028 ~ 9539523 (+)
ptbp2b ptbp2,ptbp2b,LOC107718150,LOC103030091,LOC108442283,LOC107570490 coding upstream 220904 9321702 ~ 9333327 (+)
rwdd3 rwdd3 coding upstream 268559 9281355 ~ 9285672 (+)
LOC122324815 hccsa.1,LOC107594665,LOC107710606,LOC107700523 coding upstream 272937 9277763 ~ 9281294 (+)
si:dkey-10f21.4 tmem56,si:dkey-10f21.4,LOC107710631,LOC107730492,LOC107570488 coding upstream 276755 9255385 ~ 9277476 (+)
si:ch211-153l6.6 LOC107722596,LOC107693750,LOC107594655 coding downstream 994 9563231 ~ 9570989 (+)
agla agl,LOC107722579 coding downstream 15818 9578055 ~ 9600236 (+)
si:ch73-14h1.2 NA coding downstream 41951 9604188 ~ 9606195 (+)
olfml2bb olfml2bb,LOC107693709,LOC107722514,LOC107589916,LOC107677754,LOC107594675 coding downstream 62481 9624718 ~ 9630195 (+)
rxrga rxrga,LOC107693746,LOC107677771,LOC107718143,LOC107589872,LOC107722630 coding downstream 96149 9658386 ~ 9672517 (+)
G10557 NA non-coding upstream 99486 9454366 ~ 9454745 (+)
G10466 NA non-coding upstream 337567 9215505 ~ 9216664 (+)
G10446 amy2a,LOC107700520,LOC107594668,LOC105896008 non-coding upstream 496372 9057090 ~ 9057859 (+)
G10445 NA non-coding upstream 497986 9055723 ~ 9056245 (+)
G10433 NA non-coding upstream 613045 8939969 ~ 8941186 (+)
G10581 LOC107722512,LOC107693701,LOC107594678 non-coding downstream 14934 9577171 ~ 9577406 (+)
G10604 NA non-coding downstream 40129 9602366 ~ 9603843 (+)
G10674 kifap3b,LOC107693735,LOC107564707,LOC107722509,LOC107718166 non-coding downstream 263378 9825615 ~ 9826220 (+)
G10738 NA non-coding downstream 426906 9989143 ~ 10010746 (+)
G10749 NA non-coding downstream 430547 9992784 ~ 9993395 (+)
olfm3b olfm3b,LOC107700521,LOC107710604,LOC107745696,LOC107680049 other upstream 382316 9162611 ~ 9171915 (+)
G10212 NA other upstream 1446454 8106865 ~ 8107777 (+)
G10108 NA other upstream 1971846 7504622 ~ 7582385 (+)
gng12a gng12a,LOC107700509,LOC107716954,LOC107551713 other upstream 2254130 7285670 ~ 7300101 (+)
lrrc53 LOC107700485,LOC107588905,LOC107716924 other upstream 2448439 7098303 ~ 7105792 (+)
arpc5a arpc5a,arpc5,LOC107722639,LOC107693740,LOC107564704,LOC107677751,LOC107718183 other downstream 184333 9746570 ~ 9751212 (+)
znf414 LOC107722538,LOC107564712,LOC107693731,LOC107691619,LOC107718126 other downstream 349391 9911628 ~ 9916861 (+)
selenof selenof,sep15,LOC107693704,LOC106598901 other downstream 596295 10158532 ~ 10161809 (+)
lyrm4 lyrm4,LOC107718092,LOC107688446,LOC107722638,LOC107689406,LOC107688520 other downstream 1100492 10662729 ~ 10665110 (+)
G10979 LOC107722568,LOC107585289,LOC107688450,LOC107718087,LOC107689412 other downstream 1148893 10711130 ~ 10718194 (+)

Expression


Co-expression Network