hs2st1a (hs2st1a,hs2st1,LOC107718112,LOC107589844,LOC107691454,LOC107722647,LOC107585633,LOC106598897)



Basic Information


Item Value
gene id hs2st1a
gene name hs2st1a,hs2st1,LOC107718112,LOC107589844,LOC107691454,LOC107722647,LOC107585633,LOC106598897
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information


Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 10146582 ~ 10158021 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence


>XM_043220440.1
TGACACAACGTGCCTATACTTCCCAGGATTTATCAACAACTGAACGTACACTACAGCTGCTACTCAAGCGAAGCGTAGTCTGAGCCCTTCTGATTCAGTAAACGTACACGATTTTACGCGGAACTGTGTTTCTTGCGCCAGCGAGTGCCCACTGGAAGTTAGTGTAGGTAGCttaggggtgtgtgtgtatgtttatattcgATTGTGGGAATCATGGAATAGCAGCACTGCTCTTTGCATCCATGAACCGTGTGCCATAAAGTTCTCGGTCACGGCATGTCCTCTCTGTGCTGGGTTTTTTGATGGGGCTTTTAAGGTTGAAGATGCCGCCGAAGTTTCAGCTCCTGGCTCTGTTGGCCTTCGCCGTTGTGATGATCTTTTTGGAAAACCAAATTCAGAAGCTCGAGGAGTCGCGGGGGAAGCTGGAACGAGCCATTGCCAGACATGAGGTACGAGAGATCGAGCAGAGGCACATTCAAGAGGGGGCGAAGGAGACTCTGGTAGCCGAGGACGATTTGGTGGTCATCTATAACCGAGTGCCCAAAACAGCCAGTACCTCCTTCACCAACATCGCCTACGACCTGTGCAACAAGAACCACTACCACGTGCTGCACATCAATACCACCAAAAACAATCCCGTCATGTCTCTTCAGGATCAGGTACggtttgtaaaaaatgtgacGTTATGGAAAGAGATGAAGCCTGCGTTCTATCATGGACACGTTTCCTTTCTGGACTTTGCCAAGTTTGGAGTGAAGAAAAAGcctatttacataaatgttatCCGGGACCCTATCGAGCGTCTGGTGTCTTACTACTATTTCCTGCGCTTTGGTGACGACTACAGACCAGGCCTGCGACGCAGAAAGCAAGGGGATAAAAAGacgtTTGACGAGTGTGTAGCTGCTGGAGGATCTGACTGTGCTCCAGAAAAACTGTGGCTTCAGATTCCCTTCTTCTGTGGTCATTACTCTGAGTGCTGGAACATCGGCAGCAAATGGGCTTTGGAGCAAGCCAAATACAACCTGGTGAATGAATACATGTTAGTCGGAGTGACAGAGGAGCTGGAAGACTTTGTCATGATGCTGGAGGCGGCACTTCCTCGCTTTTTCAAGGGGGCCACAGAGCTCTATCGGACAGGGAAGAAATCGCATCTAAGGAAAACGAGCGAGAAGAAGCCGCCCACCAAAGAGTCTATAGCCAGACTTCAGCAGTCAGACATCTGGAAAATGGAGAATGAGTTTTATGAGTTTGCACTAGAGCAGTTCCAGTACGTTCGGGCTCACGCAGTGAGAGAAAAAGATGGAGAGCTGTATCTACTGGCACAGAACTTTTTCTATGAGAAAATCTACCCAAAGACTACCTGAGACTCAATGCTGCTCCGTAACACTGTATGCTGTGGTCAGAAACACTGGAGGGAGGACGCCGTCCGTTCTGTCCCACTGTTTTCCATCTGGATGTGTGCATTAGGAGCAACTGAAACAAGTCCGTGCCACAGGGAAGAGTCTTGGGGCCAAATAGCTTTCAAGAGCTTTACCTCCACCTCCCCCaaagtacatttaatttcaaagaaATCTTAAAAGCTCTCTAATGAGCTTAAAAAAGTCTTGTTCGTGTTGTTATTCACCTTTCTGCCATAGGGATTTGATACAGGTGCTGCCACATTTCAGAACGTTTTGTTACAGTACTTATTTAACGCATTAATGGTTCTGTTTTTTTggggtgtgatttttttttttttttttttttttttttttttttaatcttaagaGTACAGATGAATACTAAACATTCTTATCAAGCTGATAAAGTGTTTTTTCCAATATAGTAAAATCAGAAATACCTTACGTACTTGTACTTTTCAAGAAACTATTTATGAGATTTATTGGAAAAACACAGATGTGGATGTATTTGACGTAGTTAAAAACACACCACACATCTtgtctcctaaaaaaaaaaaaaagagagcatttttctgtttgctttctgCTTGGGGTTCAgtcttgcatttttttcagcaactgcagatgatatatttttatctacaaatatatgtaaataccgGTCATTACAGTTACAGCTGgaccaaaacatttaaaaataggaCGATGAAGAATTGAGTATGAAATGCATTACTGTCACTTGTTCTTGATAAACGGtaattcttttgttttaatttgcttttatatgttttatggCTGAATTATCGTGTTTTTTCTATGTAGTTTAAACATACTTTGTTACTCGTGGCAACATATCATTAGTCTGCTGCTTTGATTTTAGATATCATGgagttaaaatgtgtttaatgaaagGAAGACTAAATTCGTCGAGACTGTGCCTTTTTTCCTGTAACGCAGAGCTGTTATCACAGCCAGTGTAAATATGATTCGATATCTCAGCATATGAATAGGTAAGGGGTGGTTTTACAACATGAAATGTAGGTACAGTTGCATAGATTGTCGTTGTTAACGTTAGTGTGGAAATAGGCACCCATCGTGTAAAATTGTTTGCCTTGTTAATGGTACTACAAGACTGGAACTGATGTCTTTTTGAAAATGGAAATTTGTCTCCTGAGTACATTATACAGTTCCAGTGTTTCTATGTACATGAGCTTTACTCAACACACAGTTGTGCATGGAATGGGTGCTAGACTGCACATTTGCCcttaaaaactaaaagacaAGATATAAAGTAGAACAGTAGGACCTTGTGACAAATTCTCACTTGTGAATATTTTGACATTGTACGGGTTCTTTTAGGTGTTTTTAGTGTATCGAAACCAATCTGTACTGTATATGACACACTAGAGTAACCTGTACATATAAAGTATgtatctgttttaatatttcttttctttcgcAGTGCCACCATGTGagcctgtttttctctcttcttttttttcccctttttatttcatttcagattGAGACTCCAGGAGCTTTGCTCTTTCCTTTTGACATTGCTAAGGTAGAtttgaaaacagatttttggATATGTCCATAATAAAAAAGAgcttgatttattattataatttcgcTAAAATATCTCAGCCtgtttatattttctgaaaactcttctttttttttctcttaacaatggagaaacaaaaatacacggaggcttattttatttaatattctttcatttttttttttttttttttttttacttgctacACGAAGACAAACCTTAAacaaaaaggaacattttttatgttacacaaaggctgcatttattgattAAACGCAGTGAGAGCAGcataagaacaaaaaatattaacatttttaattactgttttccattttaatatatttgaaaatgtattactgGGATGGTaatgttgaattttcagcagtcattactccatctcttcagaaatcattaaaatatgctgatttgctgctcaagcaTTTTATTGTCTAACGCTGACAACAGTCagggttttaaatattatgagGACCGTTTATCataattctttgatgaatagaaagtgtttatttgaaaaatgtctttactgacacCTTTGATCAATTCACTGCATATagctgaataaatgcatttctttaaaaatacagtttactgACCCCCACCTAAATTTTGACTGGTCCATATATATCTTttcatagaataaaataaaaaacttttcttaACCACCA

Function


symbol description
hs2st1a Enables heparan sulfate sulfotransferase activity. Acts upstream of or within epiboly involved in gastrulation with mouth forming second; regulation of canonical Wnt signaling pathway; and regulation of cell-cell adhesion mediated by cadherin. Predicted to be located in Golgi membrane. Predicted to be integral component of membrane. Is expressed in several structures, including brain; immature eye; otic vesicle; pectoral fin; and segmental plate. Orthologous to human HS2ST1 (heparan sulfate 2-O-sulfotransferase 1).
hs2st1 Predicted to enable heparan sulfate 2-O-sulfotransferase activity. Predicted to be involved in heparan sulfate proteoglycan biosynthetic process, enzymatic modification and heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process. Predicted to act upstream of or within gene expression; heparin metabolic process; and ureteric bud formation. Located in membrane.

NR:

description
PREDICTED: heparan sulfate 2-O-sulfotransferase 1

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0008146 sulfotransferase activity molecular_function

KEGG:

id description
K02513 HS2ST1; heparan sulfate 2-O-sulfotransferase HS2ST1

RNA


RNA id representative length rna type GC content exon number start site end site
XM_043220440.1 True 3659 mRNA 0.39 7 10146582 10158021

Neighbor


gene id symbol gene type direction distance location
lrrc8da lrrc8d,lrrc8da,LOC107722644,LOC107585666,LOC107718115,LOC107691468,LOC107589846,LOC107722505 coding downstream 32997 10108131 ~ 10113585 (-)
sept2 sept2,LOC107722571,LOC107693718 coding downstream 75119 10062763 ~ 10071463 (-)
bokb bokb,LOC107693720,LOC107722584 coding downstream 93139 10049401 ~ 10053443 (-)
zgc:161973 LOC107722582,LOC107693721,LOC107718160,LOC107585707 coding downstream 100702 10040661 ~ 10045880 (-)
kif1ab kif1ab,LOC107722550,LOC107691514,LOC107693723,LOC108432503,LOC107589853 coding downstream 113284 10008346 ~ 10033298 (-)
tox tox,LOC107718108,LOC107722616,LOC107585594 coding upstream 65310 10223331 ~ 11062973 (-)
trnak-cuu_1 NA coding upstream 231530 10389551 ~ 10389623 (-)
LOC122359424 mplkip,LOC107722562,LOC107585495,LOC107688429,LOC107718104,LOC107689394,LOC107589834 coding upstream 271773 10429794 ~ 10433121 (-)
inhbab inhbab,LOC107718177,LOC107589832 coding upstream 307288 10465309 ~ 10476229 (-)
afg3l2 afg3l2,LOC107589831,LOC107689395,LOC107688430,LOC107585478,LOC108435493 coding upstream 323649 10481670 ~ 10489280 (-)
G10812 NA non-coding downstream 99209 10046818 ~ 10047373 (-)
G10773 NA non-coding downstream 218745 9926105 ~ 9927837 (-)
G10708 NA non-coding downstream 397842 9748387 ~ 9748740 (-)
G10621 NA non-coding downstream 540387 9605638 ~ 9606195 (-)
G10562 NA non-coding downstream 685498 9457163 ~ 9461084 (-)
G10869 selenof,sep15,LOC107693704,LOC107586130 non-coding upstream 557 10158578 ~ 10160064 (-)
G10987 NA non-coding upstream 68197 10226218 ~ 10226856 (-)
G11057 NA non-coding upstream 508456 10666477 ~ 10666712 (-)
G11064 rpp40,LOC107722637,LOC107688445,LOC107689405 non-coding upstream 509621 10667642 ~ 10668967 (-)
G11063 rpp40,LOC107688445,LOC107722637,LOC107689405 non-coding upstream 511041 10669062 ~ 10669414 (-)
lmo4 LOC107722609,LOC107693715,LOC107691760,LOC107589910 other downstream 2873 10140935 ~ 10143709 (-)
pkn2a pkn2,LOC107693716,LOC107585639,LOC107722607,LOC107718113,LOC107691687 other downstream 6997 10119973 ~ 10139585 (-)
hfm1 hfm1,LOC107722645,LOC107586144 other downstream 50725 10080182 ~ 10095857 (-)
si:ch211-267e7.3 si:ch211-267e7.3,LOC107722581,LOC107594654,LOC107718186,LOC107589917,LOC107677774,LOC107693699 other downstream 528109 9606323 ~ 9618473 (-)
plppr5a plppr5,plppr5a,LOC107722655,LOC107693754,LOC107677753,LOC107589876,LOC108441579,LOC107718169 other downstream 626801 9491563 ~ 9519781 (-)
ca8 ca8,LOC107693711,LOC107585586,LOC107691405,LOC107589840,LOC107722503,LOC102778484 other upstream 156012 10314033 ~ 10320403 (-)
G11011 chd7,LOC107585562,LOC107722533,LOC107688517,LOC107718105,LOC107589837,LOC107689390 other upstream 218042 10376063 ~ 10378211 (-)
fbxl7 fbxl7,LOC107718179,LOC107689422,LOC107688519,LOC107589836,LOC107722558,LOC107585539 other upstream 234661 10392682 ~ 10421475 (-)
G11102 tgfbr1a,LOC107585257,LOC107722631,LOC107688454,LOC107689415,LOC107718081 other upstream 600007 10758028 ~ 10764891 (-)
LOC122359216 tgfbr1a,LOC107688454,LOC107585257,LOC107722631,LOC107589809,LOC107718081,LOC107689415 other upstream 609953 10767974 ~ 10861595 (-)

Expression



Co-expression Network