mycb (mycb,LOC107584016,LOC107657430,LOC107713991)


Basic Information

Item Value
gene id mycb
gene name mycb,LOC107584016,LOC107657430,LOC107713991
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 14935722 ~ 14937958 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043220464.1
TAGCAGCTGTTCGAAATCTTGCAGTAAATGACAAGCAGCCGCTCCGGTGCTGCAGTCGCACAAGTGCGGAGATTGAGCGGCGCACTCCCACTTTGGACTTACTTTCACCCGATACTTCACATACACTGACATTTGACCGTATTGTCACTTTTCATTCAGTTTCACCACAGCTACGGCATTCACCATGCCGCTGAATTCAAGTATGGCGAGTAAAAACTACGATTACGACTACGACTCCTACCAGCCCTATTTCTATTTTGACAACGAGGACGAGGATTTCTATAACCACCAGCACGGACAGCCACCGGCGCCCAGTGAGGATATATGGAAGAAATTTGAACTGCTCCCCACTCCGCCGCTCTCCCCGAGCCGGCGTCCCTCGCTGTCGGACCCCTTCCCCTCCACGGCAGACCAGCTGGAAATGGTGTCGGAGTTTCTCGGGGACGACGTGGTCAACCACAGTTTTATTTGCGACGCGGACTACTCCCAGTCTTTTCTGAAGTCGATTATCATTCAGGACTGTATGTGGAGCGGCTTCTCCGCCGCGGCTAAGCTGGAGAAGGTGGTGTCGGAGAGATTAGCGTCGCTGCAGGCGGCGAGGAAAGAGTCTTCCAGGAGCGACCCCGCGGACGGCTGTCGGTCCAGCCCTAACGCCAGCTACCTTCAGGACATGAGCACCACTGCCTCCCAGTGCATTGACCCATCAGTAGTGTTTCCTTTCCCGCTGACTGACGGCTCAAAGCCGTGTAAACCGACATCCGCACCGATTTCCACAACACTGCCACTGGATACCCCACCAAACAgtgggagcagcagcagcagtgacAGCGATTCCGatgatgacgacgacgaagaagaggaggaggaggaggaggagatcgACGTTGTCACGGTGGAAAAGAGAAAGTCCGTGAGAAAGCCTGACGCGAACGCGACGCACCAAAGCCCCGTCGTCCTCAAGCGTTGTCATGTTAATATTCACCAACACAACTACGCCGCGCAGCCCTCCACGCGGAGCGAGCAGCCCGCGGTCAAGCGGATTAAATTCGAGAGTCACATTCGGGCGTTTAAGCAGATGAGCCACAGCCGCAAATGCGCGAGTCCCAGGACGTCGGACTCCGAGGATAACGACAAGCGCAGGACTCATAACGTGCTCGAGCGGCAGCGGCGGAACGAGCTCAAGCTCAGCTTCTTCGCGCTGAGGGACGTGATTCCCGACGTGGCCAACAACGAGAAAGCCGCCAAAGTGGTGATACTCAAGAAGGCGACGGAGTGCATAGCCACCATGCAAGAAGATGAGCAAAAACTGATCTCGCTTAAGGAGCAGTTGAGGAGAAAATGTGAACATTTGAAACAGAGACTTGAGCAGCTAAGCTGTTCTTAAGTTGCCTGGACTTTAATTTATGGACTGAAGTCGTTTTAAGCATCCTTGTAGCCAATACAAGGTCTTGAAGGTGTGGCAAGTTGTGAGCAATCTGACATTGATTTATACAATTACACTGCCTCAATTTGAACATGATGGAGGttagatttatttgtatttaattttattttttagcaaaaaatCTCTGCGGTTCCACTTACTGTTTGCCttaacttaatgttttttttgtttttgtaagttttgtaCATATTGCACATATGTATTCAAGATGctgttcatttctgaattattataaaatgcatttctctaTAAAACTGTTTTTGGCTAA

Function

symbol description
mycb Enables DNA-binding transcription factor activity, RNA polymerase II-specific. Involved in negative regulation of transcription by RNA polymerase II and positive regulation of transcription by RNA polymerase II. Acts upstream of or within definitive hemopoiesis and hematopoietic progenitor cell differentiation. Predicted to be located in nucleus. Is expressed in several structures, including caudal vein plexus; intestine; nervous system; presumptive neural retina; and shield. Human ortholog(s) of this gene implicated in several diseases, including carcinoma (multiple); demyelinating disease; hematologic cancer (multiple); prostate cancer (multiple); and urinary bladder cancer. Orthologous to human MYC (MYC proto-oncogene, bHLH transcription factor).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K04377 MYC; Myc proto-oncogene protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043220464.1 True 1712 mRNA 0.50 3 14935722 14937958

Neighbor

gene id symbol gene type direction distance location
ankhb ankhb,ankh,LOC107657429,LOC107713990,LOC107701025,LOC107718038,LOC108437249 coding upstream 3042 14918221 ~ 14932680 (+)
otulinb LOC107713989,LOC107657417,LOC107718039,LOC107701026,LOC107556827 coding upstream 20413 14910875 ~ 14915309 (+)
stard3nl stard3nl,LOC107686094,LOC107713985,LOC107664037,LOC107751580 coding upstream 72214 14855829 ~ 14863508 (+)
epdr1 epdr1,LOC107664036,LOC107558964,LOC108267170,LOC107713986 coding upstream 80551 14852700 ~ 14855171 (+)
ranbp9 ranbp9,LOC107713984,LOC107556766,LOC107664064,LOC107686062,LOC107751564 coding upstream 86293 14838422 ~ 14849429 (+)
klhl18 klhl18,LOC107657445,LOC107733883,LOC107701005,LOC107730797 coding downstream 276911 15214869 ~ 15222679 (+)
zgc:136930 zgc:136930,LOC107599883,LOC107733879,LOC107657418,LOC107559002 coding downstream 292048 15230006 ~ 15235251 (+)
ccr9a ccr9a,LOC107579348,LOC107733890,LOC107657446,LOC107730785,LOC107557055,LOC107700981 coding downstream 300523 15238481 ~ 15240694 (+)
si:dkey-154p10.3 si:dkey-154p10.3,LOC107733888,LOC107657449,LOC107701000,LOC107730804,LOC107557070,LOC107736657 coding downstream 318086 15256044 ~ 15260435 (+)
LOC122357442 LOC107599890,LOC107657450,LOC107733889,LOC107730803,LOC107701003 coding downstream 322617 15260575 ~ 15262914 (+)
G12143 NA non-coding upstream 49653 14857372 ~ 14886069 (+)
G12144 NA non-coding upstream 56950 14866198 ~ 14878772 (+)
G12136 NA non-coding upstream 106236 14827051 ~ 14829486 (+)
G12135 fam134b,LOC107686060,LOC107664066,LOC107584095,LOC107751562,LOC107558208,LOC107713983 non-coding upstream 108777 14823161 ~ 14826945 (+)
G11918 LOC107664027,LOC107713977,LOC107584165,LOC107556660 non-coding upstream 297917 14637589 ~ 14637805 (+)
LOC122323195 NA non-coding downstream 1231 14939189 ~ 14982818 (+)
LOC122328201 NA non-coding downstream 87445 15025403 ~ 15026789 (+)
G12211 NA non-coding downstream 96971 15034929 ~ 15037006 (+)
G12255 NA non-coding downstream 180499 15118457 ~ 15180254 (+)
G12273 NA non-coding downstream 210647 15148605 ~ 15150875 (+)
ackr4a LOC107664061,LOC107751559,LOC107556724,LOC107751558,LOC107751560,LOC107713978,LOC107586293 other upstream 152745 14776322 ~ 14782977 (+)
plxdc2a LOC107686089,LOC107713976,LOC107751571 other upstream 182561 14746107 ~ 14753161 (+)
G11854 jph1b,jph1,LOC107584332,LOC107550709,LOC107746914,LOC107732545,LOC107664083,LOC107686034,LOC107740042 other upstream 756107 14175364 ~ 14179615 (+)
rnf152 rnf152,LOC107729101,LOC107679332,LOC107567413,LOC107674343,LOC107714840,LOC107584540 other upstream 2061714 12867929 ~ 12874008 (+)
LOC122358236 NA other upstream 2309335 12623823 ~ 12626387 (+)
LOC122357435 LOC107733881,LOC107599885,LOC107657419 other downstream 303839 15241797 ~ 15249249 (+)
dars2 dars2,LOC107720851,LOC107700987,LOC107558296,LOC107599907 other downstream 922221 15860179 ~ 15875764 (+)
G12531 LOC107722077,LOC107568983 other downstream 1329085 16267043 ~ 16268797 (+)
LOC122323293 NA other downstream 1512174 16450132 ~ 16456532 (+)
LOC122361622 NA other downstream 1786656 16724614 ~ 16776351 (+)

Expression


Co-expression Network