cop1 (rfwd2,LOC107726924,LOC107678936,LOC107722073,LOC107658354)


Basic Information

Item Value
gene id cop1
gene name rfwd2,LOC107726924,LOC107678936,LOC107722073,LOC107658354
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 16275070 ~ 16285558 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043220484.1
GGAAGTTCTCGCGTGAACATCCTGCAgacagtggattgaaatttctAAAGCTCTCAGAGTTGTCAACAAATCTCTGCGGAGCTGCATATCCACATTAGCATCGAGCAGACCCGATGTGAAGTTCTTGCACGGAGAAGAACCACTTCAGCTGTGATCAAAAAAGCGCATTTCATTGCTAACAGCGCGCTTGCTGGAAGTTTCTGCCTCTTTTCTCTCATAGGTGCCGCTTTAGCTAGTTAGCGTATCTCACACAGCCGCCCGGATGCGGTGAAGCCCCGCAGATTTACCTTCAGCTCTGGCCTTCCGACGTGCACGAACGGCTTCAATCATGTCAAGCACtcggcagcagcagcagcagtccgGCGGTGCAGCGGGGTCCGTCCCCGGGACGAGCTCTGGAAGTATGAGTAGCAGTAGCGGCGGCGGCGCCGGTGGAGCGAACAGCGGGAGCGGCGGCGCTCAGAACGGGAGCAGCTCGGCTAACGGGGTGTCCTCGCGGACTCTGGGCTCGGTAGCCGAGGGACAGAGCGCTCGAATGGGCTCGTCGACCAGGAAAAGACCCTTGTACAACGGTCTTATAAATCCGTATGAGGACAAGAGCAATGATTTTGTGTGTCCTATATGTTTTGAGATGATAGAGGAAGCTCACATGACAAAGTGTGGCCACAGTTTCTGTTATAAATGTATACGGCAGAGTTTGGAGGACAGCAACAGATGcccaaaatgtaattatatcaTTGATAATGTGGATCAACTCTACCCCAACTTCTTAGTGAATGAACTGatcctgaaacaaaaacaaagatctGAAGAGAAGCGTCTGAAACGGGATCACCCTAATGGAACCAAATGGCAGGTTTTCCAAGACGTACTTGGTGCAGATCAAGAAAATATGGACTTAGCCAATGTCAACTACATATTAGAGTACctgttgcaaaaaaagaaacaactggAAGCGGAATCACAAGCTGCTCAGCGCCAGATCTTAATGGAGTTCCTGAAAGAAGCcagaagaaataaaagagaGCAACTGGAGCAGTTACAAAAAGAACTGAACTTTTTGGAGGAGGATATCAAACGAGTTGAGGAAATGAGTGGTATGTACACAGTCAGTGAAATGGACCCCAATTTAGACAGTACTGTACCTCAGTTTGAAGCCCCTCCTGCACCCAGCAGTAGCATAATAGACCCCACAGAATACATGCAGCACCCTTTTGGCGGAAGCTCCCAGggtAAAAGACAAACTTGGTACAATAGCACTCTTGCTTCACGGCGTAAGAGACTAACGGCACACTTTGAAGATCTAGAGCAATGCTATTTCTCCAATAGGATGTCTCGAATAACAGATGACAGCAGGACTGTTAACCAACTGGATGATTTCATGGAGTGTCTATCAAAATTTACCCGTTACAACTCTGTGAGGCCTCTGGCCACCCTATCTTACGCTAGTGACCTCTATAATGGCTCCAGTATTGTGTCCAGCATTGAGTTTGACCGCGACTGTGATTACTTTGCCATTGCCGGTGTCActaagaaaattaaagtgtttgaGTACGGCACTGTGATCCAGGATGCTGTGGACATTCATTATCCTGTCAATGAGATGACATGTAACTCTAAAATTAGCTGTATCAGCTGGAGTAGCTACCACAAAAATCTGTTAGCCAGCAGCGACTATGAGGGCACTGTCATTCTTTGGGATGGGTTCACGGGACAGAGGTCAAAGGTCTACCAGGAACATGAAAAGCGGTGCTGGAGTGTCGATTTCAACCTCATGGATCCCAAGCTCTTAGCATCAGGGTCGGATGACGCGAAAGTCAAATTGTGGTCCACCAACCTGGACAATTCTGTAGCCAGCATTGAAGCGAAGGCCAATGTATGCTGTGTAAAGTTCAGTCCATCCTCAAGATATCACCTGGCCTTCGGATGTGCAGACCACTGTGTGCACTACTACGACCTGAGAAACACTAAGCAGCCCATCATGGTTTTCAAAGGCCACAGGAAAGCAGTGTCCTATGCCAAATTTGTAAACGGAGAAGAGATTGTGTCAGCATCAACGGACAGCCAGCTGAAACTCTGGAACGTGAACAAGCCACATTGTTTGCGCTCATTTAAAGGCCACATAAATGAGAAGAACTTTGTGGGTCTGGCATCTAATGGAGACTATGTAGCATGTGGAAGTGAAAACAACTCGCTGTACTTGTACTACAAGGGGCTCTCCAAGACACTGCTGACTTTCAAGTTTGACACTGTGAAGAGCGTCCTGGACAAGGACAAGAAAGAGGATGACACCAATGAGTTTGTCAGTGCGGTGTGCTGGCGAGCTCTACCTGATGGGGAGTCAAATGTGTTGATTGCAGCCAACAGTCAAGGAACAATCAAGGTTCTTGAGCTGGTCTGAAGGTCCACTCCGATCTGTCGTCAGAACCTACTAAAGACCTGTTGCTTCACTGGTTGGTCGATGCAAGGGCTCTGTAGCTGAGTGGAACTGAAGCAAATATTTCCAAGGAAACAACCAGCAGAACTGGTTTTTATCagcattatatttgtaaaagaCTCAATCATTTTGCGTCGTCTTGCTATCGCTGTATGTGAAATGTTGAGATGAAGATCTGTTTGTGCTGACAGGGAGATTGGGCGAGAATGCCTCTCTTTTTGAATAAAGGTATTAGGAAGTTACTGGAGAATAACTGAACATCTTTAAACATAGAGGGGAAGACACATTCTCAAACCTTTACTAGATGTAATTCTAGCCAGAACAAGAGCTACGAGACATTTAAGGCCAAAGCACAAGACCATAACACAATGAAATACTTTTAGTTCTATAAATTAGCTGTCTTTGATTCCTCGAGCCTGTTGTATCTATTTGCTtgttgggttttgttttttgatacaCTGTCTGTTTATTCATAAGATGTGTGTAAGCTTTGGCGTATTCCGGTGGTCTCCCCGAATTAAATTAcaggacctttttttttgttttgtttttcccccttttttttttagcttttatgtTGGTTAAGTGGACATGCTTATCATATCAAGGGTATTTTTAAGTATACAAGATGTTCTCTTAATTTGGTATTTACTGcaatttgaaattatttcattCTTGTAAATCCCAGGAAGTCCTATACTCATCAGACAACCTTTGCATGAGATTCTTTTCAGTTTCTCCATGTTTTCAAGATCTAATATTTTGCCctttggtcagcggttcctgacaAAAGTGCTTTTAAATTGAGATTGCAGGCATTGACAGTTGCCCCGTGTTCTTTTACATGGTCAAAAATTACATTGAAAGAGTAAATTAGAACTCATCAAAGGTTTAATGACACTATGTATGATTCACTGGGATTATTTAACATCACCCGTAACATTGCTGCTCTTTCATCTTTGAGTTCTTGTacaagtgttatttattttaataatttatagaaATTGTGTGAACATTGAACCCATAATAGAATTTAGGTTTCAAGCTTTATTTGTAAGTCCTCTGATGCATCCTGgtaattctgtttatttactcattttaacacattaatttgaataaataaatgattttttttttc

Function

symbol description
rfwd2 E3 ubiquitin-protein ligase RFWD2

NR:

description
E3 ubiquitin-protein ligase RFWD2 isoform X2

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K10143 RFWD2, COP1; E3 ubiquitin-protein ligase RFWD2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043220484.1 True 3575 mRNA 0.44 21 16275070 16285558

Neighbor

gene id symbol gene type direction distance location
astn1 astn1 coding upstream 50599 16031983 ~ 16224471 (+)
klhl20 klhl20,LOC106569069 coding upstream 418315 15849084 ~ 15856755 (+)
kif2c kif2c,LOC107599896,LOC107657458,LOC107720856,LOC107700992,LOC107558283 coding upstream 513316 15754575 ~ 15761754 (+)
kiss1ra LOC107657423,LOC107599909,LOC107722062,LOC107700977,LOC107559038 coding upstream 569499 15694208 ~ 15705571 (+)
zgc:113531 zgc:113531,LOC107739831,LOC107599893,LOC107657421,LOC107557127,LOC107730792,LOC107700978 coding upstream 689897 15580143 ~ 15585173 (+)
tnr tnr,LOC107658355,LOC107726886,LOC107558359 coding downstream 39592 16325150 ~ 16443361 (+)
mrps14 LOC107722064,LOC107563590,LOC107658361,LOC107678929,LOC107559053,LOC107726917 coding downstream 210383 16495941 ~ 16497221 (+)
LOC122355504 cacybp,LOC107722060,LOC107658360,LOC107678928,LOC107726916,LOC107559063,LOC107563589 coding downstream 212151 16497709 ~ 16499702 (+)
plk3 plk3,LOC107722069,LOC107563563,LOC107658359,LOC107726922,LOC107678927,LOC107557223 coding downstream 215494 16501052 ~ 16507898 (+)
ankrd45 ankrd45,LOC107563586,LOC107658305,LOC107722043 coding downstream 259778 16545336 ~ 16547012 (+)
G12530 pappa2,LOC107568983,LOC107722077,LOC107558342,LOC107658303,LOC107678935,LOC107726923 non-coding upstream 10150 16263774 ~ 16264920 (+)
LOC122359940 LOC107743936,LOC101883431 non-coding upstream 240162 16032757 ~ 16034908 (+)
G12491 NA non-coding upstream 396666 15878134 ~ 15878404 (+)
G12451 NA non-coding upstream 463677 15810893 ~ 15811393 (+)
G12432 NA non-coding upstream 470149 15723086 ~ 15804921 (+)
G12607 NA non-coding downstream 405368 16690926 ~ 16693619 (+)
G12669 NA non-coding downstream 498342 16783900 ~ 16784544 (+)
G12729 LOC107678904 non-coding downstream 541472 16827030 ~ 16829326 (+)
LOC122356672 NA non-coding downstream 544550 16830108 ~ 16839463 (+)
G12730 NA non-coding downstream 545091 16830649 ~ 16831883 (+)
G12531 LOC107722077,LOC107568983 other upstream 6273 16267043 ~ 16268797 (+)
dars2 dars2,LOC107720851,LOC107700987,LOC107558296,LOC107599907 other upstream 399306 15860179 ~ 15875764 (+)
LOC122357435 LOC107733881,LOC107599885,LOC107657419 other upstream 1025821 15241797 ~ 15249249 (+)
ackr4a LOC107664061,LOC107751559,LOC107556724,LOC107751558,LOC107751560,LOC107713978,LOC107586293 other upstream 1492093 14776322 ~ 14782977 (+)
plxdc2a LOC107686089,LOC107713976,LOC107751571 other upstream 1521909 14746107 ~ 14753161 (+)
LOC122323293 NA other downstream 164574 16450132 ~ 16456532 (+)
LOC122361622 NA other downstream 439056 16724614 ~ 16776351 (+)
golim4b golim4b,LOC107591324,LOC107684437,LOC107706331,LOC107559125,LOC107659375,LOC107738257 other downstream 746581 17032139 ~ 17039903 (+)
sppl2 sppl2,LOC107738168,LOC107706381,LOC107591351,LOC107659410,LOC107668984 other downstream 1076687 17362245 ~ 17369102 (+)
G13114 tep1,LOC107591368,LOC107706362,LOC107659385,LOC107738210,LOC107591364,LOC107738151 other downstream 1281283 17566841 ~ 17567916 (+)

Expression


Co-expression Network