tmub1 (tmub1,LOC107657441,LOC107557000,LOC107701014,LOC107599877,LOC107709792,LOC107718025)


Basic Information

Item Value
gene id tmub1
gene name tmub1,LOC107657441,LOC107557000,LOC107701014,LOC107599877,LOC107709792,LOC107718025
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 15155013 ~ 15161351 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043220557.1
TTTTAAACCGGAAGTAGTCGTTGTGGCGTCATTCTATCCTGCCTGTGATCAGGAAGCGCAGACGTTAAACGGTGCGAATCATGGACCATCATACGATGTGATATGTCAACGGTGCCTAGTCTGAAGTTGCCTTAGTCCAGGACACAGCAGACCAGGATGGCTCTAATAGAGGGGGTGGGTGATGAGGTCACCCTGCTCTTTGGAGTGGTGTTCCTGGTGCTCGTCCTGGTTCTGGCCTGGGCCTCCACCCACACTGTTGAACCCCCTGAACACCTCCTGTCACCCAGCCCAGGGACCTCCCCCTCCACAGAGACTGACAGCCAGGAGCCGCTCCCCCCGGGCAACACGGACTCGTCTCCCGGCGGCGTCAGCGAGAACGATAAGAGTGAGCCTGGAACAGACGCGGGAGCGGCGGGACATTCCCCGGATGCTAGTAGGGCTGAAGGAGGCGAGGGAGGCCTCCTGGAAGAAGCAGGGATCGGGAGGGATGGGTTGAGACATCGAGAATCAGCGGGTCCCTCGACTCAAACTCCAGCCAGTGCCCCAAGTGCCACACAGCCTTCAGCCGAAGATGCACCGAATGACACCCAAAGAAACATGGTGCTCAGGCTGAAGTTCTTGAATGATACTGAGAGGACAGCACAGGTCAATCCTCAAGACACCATTGGTTACATTAAACGGACTTACTTTGCTGGACAGGAGCACCAGGTACGTCTGATTTACCAGGGTCAGCTCCTTCAGGATGACGCTCAGACGCTGGCCTCCCTCAACCTGGCCGACAACAGTGTTCTGCACTGCCACATCTCACAGCACGCCACGCGGGCCATGCCTGCCGGGGCTCGGGCTGCTGACCAGGTGCATGTGGCGCTCAACGTGGGCAGCCTCATGGTGCCTCTGTTCGTGCTTATGCTTTCTGTGCTCTGGTACTTCCAGATTCAGTACAGGCAGTTCTTCACTGCACCTGCCACCGCCTCACTCGTGGGCATCACCATCTTCTTTAGTTTTGTTGCGTTTGGGGTGTATCGCCGTTGATGGCTGTTTCTGTCCACTCATAGTCAGCATTTGCGCACATACAGATACACATTCTTTGCACTTGCTCACTCACCAGTGCCAGTGGCAATGTCTTCTGGGAATTTTGGACTTTTCAGGTTTGCTGAAGGCTGTGATTTCAGAGAAACATCTCTGAGGttgtccgtttttttttttttttggttcggTTCATCACTTTTGCCATTTCATCTGCACCAAGTTTATGCTTGTCACAGATagaaatatgctatatatttgattttttaaaaaggaaaaatagagATGCTGATTGTGCCTGTcctctttttcttatttttgttttcatgtgcaTGCTGCCAGTGTGAAACTGGGGCTTGCTTGTAAGAGGGTATGTGAGTTGATGGTGTTTGAGTTTCAAGCAGGGCTCGTCTGGCTGTCTGCCAGACTCAAACTCTGTAGTAAAGCAGTTCAGCTAGAGCTGCTCTTATGTGTTGggacaattaaaataatttgtgtacAATAAGGCTTTTGAAATGGAGATATAATCTATTAAATCATTCTTTTATTTA

Function

symbol description
tmub1 Predicted to be involved in ubiquitin-dependent ERAD pathway. Predicted to be located in cytoplasm; membrane; and nucleus. Predicted to be integral component of membrane. Orthologous to human TMUB1 (transmembrane and ubiquitin like domain containing 1).

NR:

description
transmembrane and ubiquitin-like domain-containing protein 1

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K23340 TMUB; transmembrane and ubiquitin-like domain-containing protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043220557.1 True 1577 mRNA 0.51 3 15155013 15161351

Neighbor

gene id symbol gene type direction distance location
abcf2a abcf2a,LOC107657436,LOC107599875,LOC107709809,LOC107556971,LOC107701016,LOC107718028 coding downstream 21252 15127984 ~ 15133761 (-)
LOC122328941 NA coding downstream 24298 15130599 ~ 15130715 (-)
ttc19 ttc19,LOC107718030 coding downstream 34846 15116514 ~ 15120167 (-)
slc4a2a slc4a2a,LOC107709836,LOC107657435,LOC107556941,LOC107718031 coding downstream 42869 15085362 ~ 15112144 (-)
ubtfl ubtfl,LOC107718032,LOC107583949,LOC107713995,LOC107556934 coding downstream 70859 15073685 ~ 15084154 (-)
fastk fastk,LOC107599878,LOC107657442,LOC107718024,LOC107701011,LOC107557009 coding upstream 996 15162347 ~ 15172881 (-)
LOC122358915 NA coding upstream 15015 15176366 ~ 15177620 (-)
LOC122358923 NA coding upstream 17691 15179042 ~ 15180243 (-)
puf60a puf60a,LOC107657443,LOC107718021,LOC107701012,LOC107599879,LOC107709765 coding upstream 19614 15180965 ~ 15193045 (-)
LOC122328939 NA coding upstream 27305 15188656 ~ 15188793 (-)
G12199 NA non-coding downstream 219988 14934769 ~ 14935025 (-)
G12175 epdr1,LOC107664036,LOC107558964 non-coding downstream 299844 14853694 ~ 14855169 (-)
G12176 LOC107664036,LOC107558964 non-coding downstream 301461 14852910 ~ 14853552 (-)
G12159 NA non-coding downstream 305580 14772490 ~ 14849433 (-)
G12308 NA non-coding upstream 61860 15223211 ~ 15223455 (-)
G12313 ccr9a,LOC107579348,LOC107733890,LOC107657446,LOC107730785,LOC107557055,LOC107700981 non-coding upstream 76608 15237959 ~ 15240826 (-)
LOC122359617 NA non-coding upstream 385684 15547035 ~ 15553604 (-)
LOC122356097 NA non-coding upstream 557277 15718628 ~ 15754422 (-)
G12567 NA non-coding upstream 1137821 16299172 ~ 16299744 (-)
smarcd3a smarcd3a,smarcd3,LOC107657439,LOC107599876,LOC107709803,LOC107556978,LOC107718026,LOC103039772 other downstream 1024 15133971 ~ 15153989 (-)
faim2a faim2a,LOC107718029,LOC107701017,LOC107556958,LOC107657438,LOC107709826 other downstream 27522 15120587 ~ 15127491 (-)
adcyap1b adcyap1b,adcyap1,LOC107713980,LOC107686049,LOC107751550,LOC107664073 other downstream 544747 14578995 ~ 14610266 (-)
LOC122328470 ptbp1a,ptbp3,LOC107602545,LOC107674042,LOC107732511,LOC107584874,LOC107558691,LOC107658670,LOC107744247,LOC107729315,LOC107688524 other downstream 1590648 13553773 ~ 13564365 (-)
LOC122323969 cahz,LOC107550722,LOC107755757,LOC107664098,LOC107686019,LOC107585971,LOC107751363,LOC108432254 other downstream 1684750 13315229 ~ 13470263 (-)
ccdc24 ccdc24,LOC107657456,LOC107599905 other upstream 398312 15559663 ~ 15579706 (-)
pappa2 pappa2,LOC107722077,LOC107568983,LOC107678935,LOC107726923,LOC107658303,LOC107558342 other upstream 1063372 16224723 ~ 16268835 (-)
LOC122362257 LOC107658348,LOC107563587,LOC107678922,LOC107726920,LOC107722065,LOC107559085 other upstream 1321809 16483160 ~ 16512019 (-)
G12658 lamc1,LOC107678923,LOC107726890,LOC107557259,LOC107722047 other upstream 1510225 16671576 ~ 16673710 (-)
G12839 NA other upstream 1644910 16806261 ~ 16806738 (-)

Expression


Co-expression Network