lrrc42 (LOC107729432,LOC107586495,LOC107602539,LOC107688527,LOC107682545)


Basic Information

Item Value
gene id lrrc42
gene name LOC107729432,LOC107586495,LOC107602539,LOC107688527,LOC107682545
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 12333787 ~ 12336926 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043220644.1
agttcaatttTTAAAACGAATACCAAGTAATTAATgtggtgaaataaaaaaatatgcggCAAACGATTAAAAAAAACGCAGCTATAGCAaaagcaaaatgttttgaaCGTGTTTTAATACTTCTGCGTAGTACTTGGgcgtttaaatacattttagtgtaCAGATttcagtaaagacttttattttgcagtgcGCGTTAAACTCGATTTACAGGAGGGATGTAACTCCAAGAGCCCGTCGTTTTTAAATCTTTCTGCAATATACAAACTTCTCGATGTTTCCGCCAAAATACCCTTGATTTTCAACTACAGCCGAATACTTTGGACGCTAAACGCTCGTTCTGCGCAGAGAGCCGGTGAGGATGTACGTTAGCGAGGACTGTGGGGCTGTGTATGTCCGAGAGAAAGGAGAACTGCGGTACGTGAACGCAGACAGGAACGATGCTCCGCAGCACAGACTCTTCTCCAGGGACTTCTCCTTTCAGCTCTGCATCGACACGTTACCGTCCTCGAGCCACACAAAGAGAAGAGACCACTTCATATTTACCTACAACAAAGAGGGCAGTCTGCGGTACACGGTCAAGTCTCTATTTGACATCTCTTTACAGTTCATCGCTGATCACGTCGAGCATGTGGACTCGCTCGTCGGGTTTCCCGAGCAAATGGCTGATAAGTTGTTCTCGGCCGCTGAGGAGAGACACAAATTCACGGAGCCTCACACGGCTCCCAGGGCGCTGCAGGTCTTCTGTGAGGCCTACGGAGAATTAGTCCTGAGATCCCTGTGCTTGAGAAACAGGAATCTCTTGATATCCGAAAGGTTGGAGGAGATCAGACAGTTTCAGGGTCTGGAGAGCCTGGACCTCTATGGATGCAGGTTAGGTGAAAACCATGaggtttttaaatacataaccTCTGAAGCCCTGGCTAGTCTTGTGAAACTTTTCATAGGTGCGAACTGCCTTTCTGATGCAGGACTGCAGAGACTGACCGCACCGGTAAGGGTGATGAAGAAAGGTCTGGAAAACCTGCAACTCTTGGATCTCTCTGagAATCCCATTACTGAAAAAGGTCTTGGATATCTAACATGCTTTAAAACGCTCCAGAAACTGGACATATCGGGGACAAGTGTGACGGTGAATTTGTCTTTGAAGGGATTCTTCAGAAAGCATATGAAAATGGTCTTATCAGAAGCACCTTTGAAGGAGTTTTCACACTCTGATTGCAAAACAGAAGGCTGGGCTGAACAGGTAATAAACCAATGGGAAATTACAGCTTCTGAAGTACCAAAGAAAGACTACAAACCAAGAACAAATGCTCTCAGTTTCTatggaAGAGAAAAGTTTGTCCGAGAGTCGTTAAACTCCTGGTCTGGTACGAGTGACACCACAAAGAAAGACAAAGTTGTGGCCATTCACTTTTACAAGGTTGATCTTTGTGACACGAGTTCAACAGCAGACCAGAACACACTTTCATCaacggcggcggcggcggctgTTCAGAAGGGCAAGAAGAGGAGACTATCAACAGAGGGAGAGCAAAGTTCAGCTCCTCTGTCGAAGCGCCAGTCTCTGTCAGCTCTGTCTGCAGAGGATATAGATCTGTTAAATAGTTATTAAGCGGACGCAGACACGTGACATCTCTGCAGTGCATTCCTCTGTGAGGAACGTGACACTGAAGTGCTTTTAGTTTGGatttttcacaattaaaaacggcttgcttttta
>XM_043220645.1
agttcaatttTTAAAACGAATACCAAGTAATTAATgtggtgaaataaaaaaatatgcggCAAACGATTAAAAAAAACGCAGCTATAGCAaaagcaaaatgttttgaaCGTGTTTTAATACTTCTGCGTAGTACTTGGgcgtttaaatacattttagtgtaCAGATttcagtaaagacttttattttgcagtgcGCGTTAAACTCGATTTACAGGAGGGATGTAACTCCAAGAGCCCGTCGTTTTTAAATCTTTCTGCAATATACAAACTTCTCGATGTTTCCGCCAAAATACCCTTGATTTTCAACTACAGCCGAATACTTTGGACGCTAAACGCTCGTTCTGCGCAGAGAGCCGGTGAGGATGTACGTTAGCGAGGACTGTGGGGCTGTGTATGTCCGAGAGAAAGGAGAACTGCGGTACGTGAACGCAGACAGGAACGATGCTCCGCAGCACAGACTCTTCTCCAGGGACTTCTCCTTTCAGCTCTGCATCGACACGTTACCGTCCTCGAGCCACACAAAGAGAAGAGACCACTTCATATTTACCTACAACAAAGAGGGCAGTCTGCGGTACACGGTCAAGTCTCTATTTGACATCTCTTTACAGTTCATCGCTGATCACGTCGAGCATGTGGACTCGCTCGTCGGGTTTCCCGAGCAAATGGCTGATAAGTTGTTCTCGGCCGCTGAGGAGAGACACAAATTCACGGAGCCTCACACGGCTCCCAGGGCGCTGCAGGTCTTCTGTGAGGCCTACGGAGAATTAGTCCTGAGATCCCTGTGCTTGAGAAACAGGAATCTCTTGATATCCGAAAGGTTGGAGGAGATCAGACAGTTTCAGGGTCTGGAGAGCCTGGACCTCTATGGATGCAGTCTTGTGAAACTTTTCATAGGTGCGAACTGCCTTTCTGATGCAGGACTGCAGAGACTGACCGCACCGGTAAGGGTGATGAAGAAAGGTCTGGAAAACCTGCAACTCTTGGATCTCTCTGagAATCCCATTACTGAAAAAGGTCTTGGATATCTAACATGCTTTAAAACGCTCCAGAAACTGGACATATCGGGGACAAGTGTGACGGTGAATTTGTCTTTGAAGGGATTCTTCAGAAAGCATATGAAAATGGTCTTATCAGAAGCACCTTTGAAGGAGTTTTCACACTCTGATTGCAAAACAGAAGGCTGGGCTGAACAGGTAATAAACCAATGGGAAATTACAGCTTCTGAAGTACCAAAGAAAGACTACAAACCAAGAACAAATGCTCTCAGTTTCTatggaAGAGAAAAGTTTGTCCGAGAGTCGTTAAACTCCTGGTCTGGTACGAGTGACACCACAAAGAAAGACAAAGTTGTGGCCATTCACTTTTACAAGGTTGATCTTTGTGACACGAGTTCAACAGCAGACCAGAACACACTTTCATCaacggcggcggcggcggctgTTCAGAAGGGCAAGAAGAGGAGACTATCAACAGAGGGAGAGCAAAGTTCAGCTCCTCTGTCGAAGCGCCAGTCTCTGTCAGCTCTGTCTGCAGAGGATATAGATCTGTTAAATAGTTATTAAGCGGACGCAGACACGTGACATCTCTGCAGTGCATTCCTCTGTGAGGAACGTGACACTGAAGTGCTTTTAGTTTGGatttttcacaattaaaaacggcttgcttttta

Function

NR:

description
leucine-rich repeat-containing protein 42 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043220644.1 True 1722 mRNA 0.45 7 12333787 12336926
XM_043220645.1 False 1668 mRNA 0.45 7 12333787 12336926

Neighbor

gene id symbol gene type direction distance location
LOC122328950 NA coding upstream 52283 12281372 ~ 12281504 (+)
rps8a rps8a,rps8,LOC107674081,LOC107688507,LOC107602544 coding upstream 52580 12278732 ~ 12281207 (+)
LOC122328989 NA coding upstream 53128 12280590 ~ 12280659 (+)
LOC122328992 NA coding upstream 53773 12279911 ~ 12280014 (+)
hectd3 hectd3,LOC107688506,LOC107674075 coding upstream 55720 12270887 ~ 12278067 (+)
ttpa ttpa,LOC107688513,LOC107729218,LOC107584770,LOC107674130,LOC107602535 coding downstream 18962 12355888 ~ 12359062 (+)
asph asph,LOC107729161,LOC107584723,LOC107688512,LOC107714857,LOC107602531 coding downstream 24794 12361720 ~ 12376736 (+)
LOC122360148 LOC108278063 coding downstream 32823 12369749 ~ 12371452 (+)
impa1 impa1,impa1.3,LOC107688552,LOC107586492,LOC107602533,LOC107729422,LOC107714831,LOC107674158 coding downstream 40031 12376957 ~ 12380610 (+)
cdh7a cdh7,LOC107584702,LOC107602530,LOC108432272 coding downstream 151287 12488213 ~ 12541573 (+)
G11419 NA non-coding upstream 232661 12100875 ~ 12101126 (+)
G11207 LOC107688485,LOC107585026,LOC107550612,LOC107709892,LOC107722651 non-coding upstream 714924 11614241 ~ 11618863 (+)
LOC122328936 NA non-coding upstream 720221 11609251 ~ 11613566 (+)
G11191 NA non-coding upstream 876923 11456326 ~ 11456864 (+)
G11190 NA non-coding upstream 878379 11454258 ~ 11455408 (+)
G11505 NA non-coding downstream 741 12337667 ~ 12339049 (+)
G11590 NA non-coding downstream 208427 12545353 ~ 12545592 (+)
G11593 NA non-coding downstream 277449 12614375 ~ 12614596 (+)
G11595 dsela,LOC107679326,LOC107584692,LOC107728919,LOC107714854,LOC107674195 non-coding downstream 279069 12615995 ~ 12621414 (+)
G11618 NA non-coding downstream 360160 12697086 ~ 12697294 (+)
pld1a pld1a,LOC107688495,LOC107550602,LOC107680234,LOC107722545,LOC108442335 other upstream 396197 11908073 ~ 11937590 (+)
mast3a LOC107722547,LOC107688474,LOC107680242,LOC107550619,LOC107709878,LOC107586070 other upstream 826083 11482104 ~ 11507704 (+)
rps28 NA other upstream 889216 11422090 ~ 11444571 (+)
mrpl34 LOC107688463,LOC107585198,LOC107722555,LOC107680228 other upstream 992676 11339735 ~ 11341111 (+)
fitm1l LOC107589905,LOC107718171,LOC107585187,LOC107688462,LOC107722554 other upstream 995318 11303678 ~ 11338469 (+)
LOC122358236 NA other downstream 286897 12623823 ~ 12626387 (+)
rnf152 rnf152,LOC107729101,LOC107679332,LOC107567413,LOC107674343,LOC107714840,LOC107584540 other downstream 531003 12867929 ~ 12874008 (+)
G11854 jph1b,jph1,LOC107584332,LOC107550709,LOC107746914,LOC107732545,LOC107664083,LOC107686034,LOC107740042 other downstream 1838438 14175364 ~ 14179615 (+)
plxdc2a LOC107686089,LOC107713976,LOC107751571 other downstream 2409181 14746107 ~ 14753161 (+)
ackr4a LOC107664061,LOC107751559,LOC107556724,LOC107751558,LOC107751560,LOC107713978,LOC107586293 other downstream 2439396 14776322 ~ 14782977 (+)

Expression


Co-expression Network