tpgs1 (tpgs1)


Basic Information

Item Value
gene id tpgs1
gene name tpgs1
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 22770549 ~ 22773756 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043220650.1
AAGATCCGCAGCGGCGTCACGTGTCCATAGCAACTGGTCGTCTCGCGGAGCCCGGCTGCGGTTCCGGTGATATTTCGGCCCGAAGCCCGTGACGCCGGAGCGGAGAGATGGCGGAGAAGCGCCGCGCCGGTGACGTCATCGCGGCCGACGCCAAGTCCCCGAAAGCGGACGCCGACGCGGAGTTCGTGTGTCAGCCCGAGGTCGGCGCTCTGCTCGGGGGCGCTCTGCTGGAGCTGCTCCGGTCCAGGCCCGACGACCCCGTGGGCTTCCTGGCCGAGCACTTCGCTCATCTGTCGGCGGAGGCGGAGGACGGGGCCCCGGAGCCCCGGAGCGTGAGCAGAGCTCTCTGGGTCCTGAGTCTGGCGCATCACTCTCACAGGTCGGCGTTTAACAGTAACGTGCGCGTGGCGTTCGAGCTGCTGGCGAgcggcggaggaggaggaggaggaggaggaggagtccGCGGGCGTCTGTACTCGGAGGTGCTGCGGAGTCTGTGCAGCGAAGGAGGTCTGTCGCTCTCCACCGCCGCTCCGCTGCTGCGCCGCGTCCAGAGCCACGACTACGAGCGCGTGCCCTTCCAGCTCTTCCGGCAGGGCGTGCTGACCTGCGCCGTGTTCGCCGACTACATCCGCAAGTCGCAGTGTCTGTACGCGGCGGTGGCGAGCGCTCCGGACCGGCCCGCGCAGAGGACGCTGTGCCAGGCGGTGCTCTCCACGCTCCGCGAGGCCCTGGACACGGCCGACCGCTCCGACGCCGCGCGATACCTGGAGGCCAGCGCCAAGATCTCCCCGGCCAAAGTGGCGCAGGCCATGGCCGAGGTCCATCCGCCCGGGCAGCGGCGCGACGGACCCACGATGGACGCGCAGGAGTTCGAGGACGCCGCCGCCGCGCTCTTCATCGCTCGGGTCCGGACCGTGACCTGAGAACGGTTCATGAGTACATCTGATCCAGGGGCGCCGAAACAGTCATGCTTTAAAATCGAGATTCGTGCTCGGCTGAGGTACAGCTAGtcgaaaaagagagagaaaagtttTAGGGTTgcatattactttaaaaacaaactgctTTTATGCTCCAGGATCACATAACAATAGccaaaaacatgagaaaatgcCATCTCTGGACAGTTGCATtcgggttttttgtttttgcattgttcAAACGTATGTGTTTTATCAAACCATCGACTTGTTTCcagattaatattattaatagagTCTTATGGCGGTGCTAAAGAAAACACTATTTTGCGTATTTGGTGTAACGCTATgcctttgtgttttaaatgcagtttcCAGGCGTTTCTTTCTCGCGTTAAAACGATCCTAAAGTTTAAGAACCAAAGAGGTATTGTTTATAAAAGCGGTGACCCTTAAACGACTCTTTCGGACACGCCCCCTTTATTTGCATGACTCCGCCCACGTTTACTCAAATAAAGCTACgtaacatttctgcaaaacactTTGCGGCCAATCACAGCGCGccggatagctggccaatcagagctcaccTCGCTTTTACGTAATGAGCTTTATACAGATCGACTCGcttcaggaggcggggcttagaggagaatcAATAACTGATAATAAAGTGTTTAGTGCACCTTAAACATcacattacaccaaatacactaaATGATGTTCTCTTTAGCAACATCACTCAGCTTCTCCAGTAACTGTGTCTTGGTTTAAGAGGAAAgggctttgatgcaacctgtgttgttaaaaatgattgattgattgaaactAAACAAACAGCCCTGTTCTAATGTGTTCGTCTGCATGAAATCATGATGTTATCTCTTGAAGTCAGCCTCAGTTCAGGAAGTGTTTGTGGTGTATTTCTGTTCTAGATATCTGAAAGCGCTCTGGTTCCTCTTTCTGAAGTTCACCACACATTTTCTCCTCTTTCTGCTGCACAGAACTCAAAGAGACATTTTAAGACGTTCATTAGGTGAATAATTACAGTCCGAACAGAAATATCTCATCTTTACAAATTTGCTTGTGCATTTGAAAACATCactgacatttattaaaatcacacgCAGTACTTTCA

Function

symbol description
tpgs1 Predicted to enable microtubule binding activity. Predicted to be involved in protein polyglutamylation. Is expressed in female organism. Orthologous to human TPGS1 (tubulin polyglutamylase complex subunit 1).

NR:

description
tubulin polyglutamylase complex subunit 1

GO: NA

KEGG:

id description
K16581 TPGS1; tubulin polyglutamylase complex subunit 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043220650.1 True 2061 mRNA 0.53 2 22770549 22773756

Neighbor

gene id symbol gene type direction distance location
si:dkeyp-68b7.5 LOC107726324,LOC107671818,LOC107696531,LOC107552690,LOC107549807,LOC107750223 coding upstream 12876 22752753 ~ 22757673 (+)
si:dkeyp-68b7.12 LOC107696752,LOC107552668 coding upstream 19019 22730674 ~ 22751530 (+)
nectin4b LOC107726329,LOC107696495,LOC107671794 coding upstream 52734 22696081 ~ 22717815 (+)
ncstn ncstn,LOC107552665,LOC107671788,LOC107696591,LOC107726318 coding upstream 82233 22672101 ~ 22688316 (+)
pnp5b pnp5b,LOC107730396,LOC107574318,LOC107750205,LOC107549813,LOC107684565 coding upstream 104637 22659064 ~ 22665912 (+)
sf3a2 sf3a2,LOC107726326,LOC107696543,LOC107671791,LOC107750226 coding downstream 7067 22780823 ~ 22784846 (+)
LOC122328301 LOC107696585,LOC107552683,LOC107724989,LOC107549819,LOC107671817,LOC100151059,LOC108427150 coding downstream 59312 22833068 ~ 22870972 (+)
pias4b NA coding downstream 152557 22926313 ~ 22937828 (+)
map2k2b map2k2b,LOC107671813,LOC107726325,LOC107696522,LOC108427153 coding downstream 165031 22938787 ~ 22946858 (+)
tcf3a LOC107671808,LOC107696481,LOC107724980,LOC107552693 coding downstream 185230 22958986 ~ 22998516 (+)
G14549 NA non-coding upstream 119706 22643795 ~ 22650843 (+)
G14541 NA non-coding upstream 184299 22522411 ~ 22586250 (+)
G14542 NA non-coding upstream 192326 22577023 ~ 22578223 (+)
G14540 NA non-coding upstream 256612 22512171 ~ 22513937 (+)
G14535 NA non-coding upstream 294347 22475781 ~ 22476202 (+)
G14553 NA non-coding downstream 2484 22776240 ~ 22777003 (+)
LOC122357472 NA non-coding downstream 12965 22786721 ~ 22802473 (+)
LOC122328317 NA non-coding downstream 39510 22813266 ~ 22829545 (+)
G14589 NA non-coding downstream 74157 22847913 ~ 22879465 (+)
G14605 NA non-coding downstream 253024 23026780 ~ 23028239 (+)
fcer1gl LOC107671799 other upstream 75219 22691199 ~ 22695330 (+)
LOC122327931 NA other upstream 96274 22633529 ~ 22674275 (+)
LOC122327302 LOC107705949,LOC107599389,LOC107675701,LOC107737183,LOC107661566,LOC107586444,LOC107679834,LOC107719545,LOC107717972 other upstream 284894 22461916 ~ 22485655 (+)
fndc7a fndc7a,LOC107660526,LOC107671595,LOC107730461,LOC107568736 other upstream 903150 21857212 ~ 21867399 (+)
LOC122324535 NA other downstream 229409 23003165 ~ 23005254 (+)
G14831 LOC107679389,LOC107745621,LOC107567694,LOC108428304 other downstream 771350 23545106 ~ 23547974 (+)
LOC122323670 NA other downstream 1162165 23935921 ~ 23939016 (+)
LOC122327416 LOC107728372,LOC107569261,LOC107681443 other downstream 1271929 24045685 ~ 24048465 (+)
LOC122327425 LOC107728372,LOC107569261,LOC107681443 other downstream 1285656 24059412 ~ 24062202 (+)

Expression


Co-expression Network