htr5aa (htr5aa,LOC107550720,LOC107732551,LOC107664052,LOC107686075,LOC107586412,LOC107751372,LOC103047601)


Basic Information

Item Value
gene id htr5aa
gene name htr5aa,LOC107550720,LOC107732551,LOC107664052,LOC107686075,LOC107586412,LOC107751372,LOC103047601
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 14009083 ~ 14015895 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043220658.1
TGAGAAACTGCAGCAGCGCGGTCGGTCAGACCTCGGAGCACAAGAACCGGAGACTGACAGGCGTTTACTCGGGATACCGTTTTCAGCCGAATGGGGTGACACTGAAGCAGAAGTGTTCTTGCCGAAAGcTGTTGCAGTCCAGTGAAGATCTTTCTTGTTATTTTGTGAGTGGTGTAAAGCGGACAAAAGAGCACTCGATAACATGGCTGATGCAAGCCAGAACAGCTCCTTTAATCAAAGCTCAGAATATGGAAATGTCTACAGACCACAGACGGTGTTCAGCGTCTTGACTTTCACCCTGCTTGCCATGCTTGTGGTGGCTACATTTTTCTGGAACATGCTCGTCCTAGTCACAATTCTCAGAGTCAGAACGTTCCACCGCGTGCCTCACAATCTGGTGGCCTCCATGGCCATATCCGATGTTATGGTGGCTGCCTTGGTGATGCCTCTCAGTCTGGTCCATGAGCTCAACGGCCGTCGATGGAAGCTGGGCCGAGTTCTTTGCCAAGCCTGGATATCCTTTGACGTCCTGTGCTGTACGGCCAGCATTTGGAACGTGACCGCGATAGCCCTCGACCGTTACTGGTCCATAACTCGCCATCTGGAGTACACGCTGAAAACCCGAAAGAAGATCTCCAACGTGATGATTGGCTTAACCTGGCTGCTGTCGTCTGTTATTTCCCTCTCCCCTCTGTTTGGCTGGGGTGAGACGTATTCAGAGGAGGACATGGAGTGCCAGGTGAGCCAGGAGCCGTCTTACACCATCTTTTCCACATTCGGGGCCTTCTATCTGCCTCTTTGTGTTGTGCTGTTTGTCTACTGGAAGATATACAAAGCTGCTAAGTTCCGTATTGGATCAAAGAGGACCAACACCATCACTCCAGTTGCAGAGGCTGGAGAGGTGAAAGAGGCCTCCAGGCAGCAGCCTCAGATGGTGTTCACGGTACGCCATGCCACGGTCACATTCCAGACGGACAGCGAGACGTGGCGAGAGCAGAAAGAGAAACGGGCAGCTCTGATGGTGGGCATCCTCATCGGAGTGTTTGTCCTGTGCTGGATCCCTTTCTTCCTCACTGAGCTCATCACTCCGCTGTGCTCCTGTCACATTCCACCGGTATGGAAGAGCGTCTTCCTCTGGCTGGGCTACTCCAACTCCTTCTTCAACCCACTCATTTACACAGCCTTCAACAAGAACTATAATAACGCTTTCAGAAATCTATTCTCCAGGCAGCGCTGAGAGATATCAGGAATCTTGAACTTGCCACAAATGCCAGTTTAAGCCACCTTAAAGATTTGGGAAAGTGTGGTCATCTTAGTTCTTCACATTTATGAAGACACGCGTCTTATATATGGATGGGATGATGTCTGGGCTTTTACTGTGAGCCAAAGTGATGATTTGATCCAGCTAAAATGTGCATTGAATTAATATAGACCATGTCTGATGTCTGGCTTTTAGCAGTCAGTTTATGAGTTTATATTTAcagtctatatttatttataataaatatatatatacagataa

Function

symbol description
htr5aa Predicted to enable G protein-coupled serotonin receptor activity; neurotransmitter receptor activity; and serotonin binding activity. Predicted to be involved in G protein-coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger; adenylate cyclase-inhibiting serotonin receptor signaling pathway; and chemical synaptic transmission. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in dendrite. Predicted to be integral component of plasma membrane. Is expressed in brain; inferior raphe nucleus; and optic tectum. Orthologous to human HTR5A (5-hydroxytryptamine receptor 5A).

NR:

description
PREDICTED: 5-hydroxytryptamine receptor 5A-like

GO: NA

KEGG:

id description
K04161 HTR5; 5-hydroxytryptamine receptor 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043220658.1 True 1522 mRNA 0.49 3 14009083 14015895

Neighbor

gene id symbol gene type direction distance location
si:ch211-207d6.2 LOC107686022,LOC107584435,LOC107732580,LOC107751360 coding upstream 16759 13939270 ~ 13992324 (+)
ptf1a ptf1a,LOC107732570,LOC107664050,LOC107586418,LOC107686074,LOC107550704,LOC107751373 coding upstream 104833 13902910 ~ 13904250 (+)
dlgap1a dlgap1a,LOC107751362,LOC107584464,LOC107550721 coding upstream 116398 13835218 ~ 13892685 (+)
LOC122326989 NA coding upstream 585920 13411296 ~ 13423163 (+)
cdh18a cdh18,LOC107706951,LOC107686063,LOC107664087,LOC107716360 coding upstream 710938 13259743 ~ 13298145 (+)
en2b eng2b,LOC107664096,LOC107751371,LOC107686076,LOC107586406,LOC107550717,LOC107732562 coding downstream 19621 14035516 ~ 14039174 (+)
rbm33b LOC107686025,LOC107751368,LOC107585941 coding downstream 35858 14051753 ~ 14075443 (+)
dnajb6a LOC107732567,LOC107584409,LOC107686029,LOC107751357 coding downstream 83455 14099350 ~ 14105505 (+)
kcnb2a kcnb2,LOC107584379,LOC107751354,LOC107686026,LOC107664054,LOC107550713,LOC108435719 coding downstream 101591 14117486 ~ 14136011 (+)
rdh10b rdh10b,LOC107584387,LOC107751355,LOC107686027,LOC107732566 coding downstream 123582 14139477 ~ 14141857 (+)
G11823 NA non-coding upstream 13710 13994791 ~ 13995373 (+)
G11812 NA non-coding upstream 91892 13904568 ~ 13917191 (+)
G11779 NA non-coding upstream 307757 13694319 ~ 13701326 (+)
G11740 NA non-coding upstream 542122 13315229 ~ 13466961 (+)
LOC122362453 NA non-coding upstream 598474 13368593 ~ 13410609 (+)
G11836 NA non-coding downstream 32822 14048717 ~ 14051620 (+)
LOC122357607 NA non-coding downstream 75669 14091564 ~ 14098847 (+)
G11856 jph1b,LOC107686034,LOC107746914,LOC107550709,LOC107584332,LOC107732545,LOC107664083 non-coding downstream 92260 14108155 ~ 14166955 (+)
G11855 NA non-coding downstream 115864 14131759 ~ 14164377 (+)
G11832 rpl7,LOC107664057,LOC107584398,LOC107686030,LOC107550715 non-coding downstream 120219 14136114 ~ 14185786 (+)
rnf152 rnf152,LOC107729101,LOC107679332,LOC107567413,LOC107674343,LOC107714840,LOC107584540 other upstream 1135075 12867929 ~ 12874008 (+)
LOC122358236 NA other upstream 1382696 12623823 ~ 12626387 (+)
pld1a pld1a,LOC107688495,LOC107550602,LOC107680234,LOC107722545,LOC108442335 other upstream 2071493 11908073 ~ 11937590 (+)
mast3a LOC107722547,LOC107688474,LOC107680242,LOC107550619,LOC107709878,LOC107586070 other upstream 2501379 11482104 ~ 11507704 (+)
rps28 NA other upstream 2564512 11422090 ~ 11444571 (+)
G11854 jph1b,jph1,LOC107584332,LOC107550709,LOC107746914,LOC107732545,LOC107664083,LOC107686034,LOC107740042 other downstream 159469 14175364 ~ 14179615 (+)
plxdc2a LOC107686089,LOC107713976,LOC107751571 other downstream 730212 14746107 ~ 14753161 (+)
ackr4a LOC107664061,LOC107751559,LOC107556724,LOC107751558,LOC107751560,LOC107713978,LOC107586293 other downstream 760427 14776322 ~ 14782977 (+)
LOC122357435 LOC107733881,LOC107599885,LOC107657419 other downstream 1225902 15241797 ~ 15249249 (+)
dars2 dars2,LOC107720851,LOC107700987,LOC107558296,LOC107599907 other downstream 1844284 15860179 ~ 15875764 (+)

Expression


Co-expression Network