epha4b (epha4b,LOC107694655,LOC107668971,LOC108428906,LOC108268054,LOC103372263)


Basic Information

Item Value
gene id epha4b
gene name epha4b,LOC107694655,LOC107668971,LOC108428906,LOC108268054,LOC103372263
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 19644610 ~ 19745895 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043220669.1
GATCGCGAGCCTCAGTAACTTTCTACAGCGACAGGGATGCAGCGCGCGCTCAGCGCAGCCTGAAAATGGCAACCCTTTGGATTTATCCGtccctccttttctttcttttcccctCCCTTACACCGAGCCAAGCCTTACGGAATTACCCAGAGAATGAAGTTACATTGCTGGACACTATGTCTGCTCTGGGAGACCTTGGCTGGGAGGCCTATCCAGCTGAAGGGTGGGAGGAAATCAGTGTGATGGATGAGAGGAACACCCCCATGCGCTCCTACCAGGTGTGTAATGTGATGGAGGCTAATCAGAACAACTGGCTACGCACACGCCACATCCCACGAGATGGAGCGCAGCGCGTCTACATCGAGATTAAGTTCACCCTGCGTGACTGCAACAGTCTGCCTGGAGTCCCTGGCACCTGCAAAGAAACTTTCAATATGTACTACTACGAGTCCAACAACCCCAACCTGTGGTTTATCAAAGAGAGCCAGTACATAAAGATCGACACTATTGCGGCCGACGAGAGCTTCACGCAGACTGACGTGGGTGATCGCGTTATGAAACTGAACACAGAAGTGAGGGACATCAGTAACTTGAGCAAGAAGGGCTTCTACTTGGCTTTCCAAGATGTCGGAGCCTGTATCGCTTTGGTGTCCCTGAGGGTCTTCTATAAGAAGTGTCCTCTTGCCGTTCTGAACTTGGCCCAGTTTCCCGACACGGTGACTGGTGGAGATTCGGCTTTGGTGGAGGTTAGGGGATCTTGTGTGAATGACTCGGAGGAGTTTGAGGCGCCGAGGATGTACTGCAGTGGAGATGGTGGATGGCTGGTGCCTATTGGACGCTGCGTCTGCAAGCCAGGCTTTGAGGAGAACAAGGACTACTGTCAGCCCTGTAGACCAGGCACCTACAAGGCCTCTTCCATGGATGCCTACTGCACCAAGTGTCCTCCTCACAGTTTTTCCCATCAGGAGAAAGCCTCTGAGTGCTCCTGCGAGAAGGGATTTTACAGAGCTGACATGGACCCGCGGTCAATGGCCTGCACCCGGCCTCCGTCTGCAGCCGAGAACCCCATCTCCACCCTGAACGACACCTCCGTGACTTTAGAGTGGAGTCCTCCCAGAGACAGCGGCGGCCGAGGGGACGTCACCTACAACGTCCACTGCAGAAAGTGTGCCAACGATGGCAAAACATGCAGCCCCTGCAGCAACAGCGTCCATTTCGTACCTAGACAGTTTGGTCTCTCGATCCCTAAAGTGTTGATCACGGACCTGCTGTCCAACACCAACTACACTTTCAGCATAGAGGCGGTGAACGGAGTGTCCGATCTGAGCCCGACCCCTAAACAACAAGTCACTGTCAACATCACCACCAGTCAGACAGTGAATGTGATcctgaaggagagaaagagtAAAGACAGTATTACACTGGCCTGGCAGGGACCCGACAGACCAAACGGAGTCATAGTGGAATATGAAGTTATCTACTATGAGAAGAACCAAAGAGACCAGAACTACACAGTTCTGAAGACCAAAGCCCACACAATGACAGTGGAGGGGCTGAAGCCAGGCACCACGTATGTGTTCAGAGTGAGAGCGCGCACTGACGGAGGCTACGGCAACTGGGGAGAAATAGAGCTGGAGACCAGTCATGAGGATATGCTGGCCATTGGGGACCCCAACCAGTCCACAATCCTTGCGGTGTCCATAGCCGGTGGCATTGTGCTCCTTATCTTCCTGGTGGCGTGTTTTGTAGTGAGCGGACGACACTGTGGCTACATTAAAGCGAAGCAAGATccagatgaagaaaaaatgcagtttcagaACGGGAGAGTGAAACTGCCAGGAAGCAGGACGTATATTCACCCCCACACTTACGAAGACCCAAATCAAGCCGTCCGAGATTTTGCCAAGGAAATCGATGCCTCCACTATACGTATAGAGAGAGTTATAGGTGCAGGTGAGTTTGGTGAAGTTTGCAGTGGTCGTCTGAAGCTCCCCAGCAAAAGAGAGATCTACGTGGCCATCAAAAGTCTGAAAGCAGGATACTCAGAGAAGCAGAGGCGGGACTTCCTGAGCGAGGCCAGCATCATGGGCCAATTCGACCACCCCAACATCATCAGACTGGAAGGAGTCGTTACCAGATGCAAGCCCGTGATGATTATTACAGAGTACATGGAGAATGGATCGTTGGATACTTTCCTGAAGAAACACGACGGGCAGTTCACGGTCATTCAGCTGGTGGGGATGATGCGTGGAATCGCTTCAGGAATGAAGTATCTGTCTGACATGAGCTACGTCCACCGTGACCTGGCAGCACGCAACATCCTGGTGAACAGTAACCTCGTGTGCAAAGTGTCCGACTTCGGCCTGTCCAGAGTCCTGGAGGACGACCCCGAAGCTGCATACACCACACGGGGCGGAAAGATTCCCATTCGATGGACAGCCCCTGAGGCTATAGCATACAGGAAGTTCACCTCAGCAAGTGATGTTTGGAGTTACGGCATCGTCATGTGGGAGGTGATCTCATATGGAGAGCGGCCTTATTGGGAGATGTCTAATCAAGACgtgatTAAAGCTATAGATGAGGGTTACAGGCTGCCCGCTCCGATGGACTGTCCTGTTGTCCTCCACCAGCTGATGTTGGACTGCTGGGAGAAGACCAGAAGTGAACGGCCCAAATTCGGGCAGATCGTCAACACTCTTGACAAACTGATCCGCAACCCCAACAGTCTGAAAGAGCTCGCCAACAGCTCAGTCTGGGAAGACCCCACCACCCCAGAGTTCAGTGTGAGTACGGTGGATGAATGGCTGGACGCTATCAATATGGGCCAGTACAAAGACAACTTTGCCAGCGCAGGCTATGTTTCTCTAGATTCCATACTGTACATCAGCTTGTGTGAGTTAAGCAAGATGGGCGTGACTCTGGTCGGGCACCAAAAGAAGATTCTTTCGGCCGTCCAGAGTTTGCACGCGCAGGGGACACACGTGCAGGTATAACAAGCCTTCAAGAGCCTACAGACTGAGAGAGTTACCAACTGCTCCCACCACAGTCCCTATCAGCAGCTTCACCCTACAGTTCCCACCCTGGATGTTTCCGCAAACGACCCTTTTGTCAGCACTCTGGCTTCCGTCCATGCACGCCCCGAGCTTCCTACAAGCAGAGGAACACACCGAGACAAGGCCACGGCAAATCATATATGAAGTATggttattaaacaaaaaaggaacaaaaacacattaggGAGAATTCACAGCTTGTGTTTTACAGTTtcaacatttgcatttcatatttgaCGTTTTGCATATCGGTCGGACTGTTATTGTTAAAAGGAGGGTTGTCGTTTCGTTTTTCTCACATGCGTGTTTGGGATATCAGTATGTCCTCCTACTTCACTTATAAACCTCAGTAAAATATCAGAAgatgtttatagtatatttattttgtcataattgAGCGTTCGAGCACAGATGGATTCAAGTCTGAGAATTCAGACGAAAAGGCATCAGAGGTTCGCGTTCCTCCAGCAAAAGATGGCCCGGAAACATCTGCGACGACAAAGACGAAGATAAGCTGAGAAGTAATCGCTCTTCACTCATCGCCTTCGAATAAGAAACCGTTCGACTTCGCAAACACGCTTCCAGAAAATAGAAACGTTATTTCTGTTCATTCGCTGCACAGATATGCCGACATGTTGTACCACTGCGAAGTTTGTGCACGTCAGATCAAGCAAAGACAACTTCGAAAGGTCACTTTCGCCATTACGAAGATCGCATCGTCTTTACGTTTACACTCGTAGTGCGTGACGACTATTGTACTATAGTgtataaaatgtacagtgttgatttaaaaaaaagaagacaaaaacgAAAAACACGGAAAACTAGAATGTTTGTAATgatgtacttttatttagtaTGAAGAGGAGGAAGCGCCCGTTATCACCGTCGTTTGCCGATGTGCGATAATAACTCATCTCTGGAATGTAGCATGGATCCTAAGCTTCAtctttgattgacaggtgacaGTGACTGCAGTTTTTTCACTCAAGTGGTGCCCTTAGCTGCTTGACTTTAGATGCCTTATTAACTGTGcagttctctctctttttctcgtCCTCCCCTTAGAAACGATATCATGAAGTTTAATGTATATAGTATTTATCATCGCGTCACTGAGAAGCTGGAGCTCGATGTTAAAGCCAGGCTCACGTGTTGTTTTTAGTCTGCTGTTTGTGGAAACGCGTTCGATCCGTGCGGATCAGGGACGGAGACGCTATTGGGCCGAACTAAATTCCTCATTCTAACTTTACCGAGACTGATTTGCTgcactgtatatttttgtactAGTGAGGTTGTTCTGTAAAGTAGAAGTCTacctgttttatttaaatatatatgagaCATAAATACAGGAACTGAGAGATAATCATACTTCAAATCGTGATTCCCTGACACacattttggctttattttatgTTTCGATGCTTCAGCACAACACTGTAACTAACTGCATAAATTTGCTTGGAATCTGTAGGGGGTTTTCTTCCACGTTCTGCAGAATTTTGCTGGAAGGATTCGAATATGCTAAAATATCTTTACTcgaaactcatttaaaatggaattataacgagtgaaaataaaattctgcaGCTGCAGATTCTGTGTGGGTTTAACTaagcacacataaacacactttcTTCTGTCAATTTTTAAGGGAAATCCATCATCATCTGTTAATAAAGTATGTATAACTGGATACTTTTGGTATCCAGTTGCTACGtgaaaatcctgaaaaaaatggtCACATATTTAGTTCCCCTAATTAAAATGGCATAAAcaacagaacataaaaaaatatacataaatcaTATTGATAAATGCAAGGAACACTACTAactattgcacttttttttttttttttttttttaccatgcatattttacagagagagagagagagaaaacactttCTTAAACAAGTGATTATGCATTTAGATGAAGTCATTTGTTCTATCCTGCGATTGTTAATGAACCTTATATACTAAATCTGAGATTTCAATATGTAAAGTAATCGCAGAAGGCCAGAACCTCATCCATTTTTATGCTCATTTttcaatgcaaaattaaatCCGTTCAACTCCAGGGAGGCAATATGCTGATGTGGCAAAATTGGCTGCAGGACATtgcattgaaataataaaaacatgatgatgacgatgatgatggcAATATTAATGACCATTAATGAATCATAAGCTCCAGTTTTACTACTGCAACGTTAAACTTCCAGTTTTGCAAATACAGCCAAGTAAATaattctatctatatatctgctCACCAAATGAATCAAAGCAGGTGGTTGTGTGACTAAACAGTGTTAGTGGCAGGATGTGGAATGTTGTTAATATGATAGAAGATGATAGATGAATCTTGCTTATAAATTGTCTATCGAGTTGTTGTCTTTTGTTCTGCCCTGGCTCTGTACATGTGTTTGGGCTCATCCTTTGTGAATGAACTCTGTTCTTTTGTAAGCTATGTGCCCATCTCTCCACACACTGCAGGTCTCTATGAGCTCGCAAAAAAAGGGTGTACGCATTGAGATTCTTCATGTCGCTgtaataaatgctaatatttttaatttctca

Function

symbol description
epha4b Predicted to enable transmembrane-ephrin receptor activity. Acts upstream of or within negative regulation of axon extension; negative regulation of collateral sprouting of intact axon in response to injury; and regulation of myelination. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be part of receptor complex. Predicted to be active in neuron projection. Predicted to be integral component of plasma membrane. Is expressed in several structures, including axis; immature eye; intestinal bulb primordium; nervous system; and pharyngeal arch.

NR:

description
PREDICTED: ephrin type-A receptor 3-like isoform X2

GO:

id name namespace
GO:0030517 negative regulation of axon extension biological_process
GO:0006468 protein phosphorylation biological_process
GO:0048013 ephrin receptor signaling pathway biological_process
GO:0048685 negative regulation of collateral sprouting of intact axon in response to injury biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0005003 ephrin receptor activity molecular_function

KEGG:

id description
K05110 EPHB1, ELK, NET; Eph receptor B1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043220669.1 True 5640 mRNA 0.46 18 19644610 19745895

Neighbor

gene id symbol gene type direction distance location
LOC122324221 NA coding upstream 13480 19629741 ~ 19631130 (+)
LOC122357116 NA coding upstream 19272 19622041 ~ 19625338 (+)
LOC122326186 NA coding upstream 24718 19618385 ~ 19619892 (+)
ccl20l LOC107708274,LOC107668934,LOC107583148,LOC107706309 coding upstream 42666 19600097 ~ 19601944 (+)
zgc:136870 LOC107668990,LOC107580513,LOC107738198 coding upstream 294592 19348346 ~ 19350018 (+)
acvr1l acvr1l,LOC107678695,LOC107749086,LOC107602619,LOC107721710,LOC107690001 coding downstream 548690 20294585 ~ 20303774 (+)
odf3l2a zgc:110183,LOC107749223,LOC107602632,LOC107721708,LOC107588920,LOC107690329,LOC107678684 coding downstream 687574 20433469 ~ 20435422 (+)
vcpip1 vcpip1,LOC107567007,LOC107721719,LOC107659314,LOC107690121,LOC107749097,LOC107602633 coding downstream 774014 20519909 ~ 20529006 (+)
LOC122358486 LOC107602635,LOC107566996,LOC107721759 coding downstream 791642 20537537 ~ 20539554 (+)
LOC122355453 NA coding downstream 797931 20543826 ~ 20547503 (+)
G13768 NA non-coding upstream 28555 19613459 ~ 19616055 (+)
G13769 NA non-coding upstream 31705 19612269 ~ 19612905 (+)
G13748 NA non-coding upstream 103632 19538570 ~ 19540978 (+)
G13690 NA non-coding upstream 481268 19163105 ~ 19163342 (+)
G13682 NA non-coding upstream 511474 19132729 ~ 19133136 (+)
G13829 znf622,LOC107678698,LOC107602620,LOC107588872 non-coding downstream 566151 20312046 ~ 20314981 (+)
G13821 NA non-coding downstream 571286 20317181 ~ 20321388 (+)
G13857 NA non-coding downstream 717843 20463738 ~ 20463959 (+)
G13874 NA non-coding downstream 719632 20465527 ~ 20465846 (+)
G13851 LOC107721736 non-coding downstream 732068 20477963 ~ 20499950 (+)
rem2 LOC107583115,LOC107567555,LOC107668956,LOC107738122,LOC107706340 other upstream 1482468 18138644 ~ 18162142 (+)
nedd8l nedd8l,LOC107591390,LOC104949953,LOC104931181,LOC107559219 other upstream 1773194 17870258 ~ 17871416 (+)
G13137 NA other upstream 1827846 17784179 ~ 17816764 (+)
LOC122325453 LOC107668965 other upstream 1862246 17779339 ~ 17782364 (+)
G13111 LOC107738210,LOC107591364 other upstream 2036518 17607252 ~ 17608092 (+)
crlf1a crlf1a,LOC107602622,LOC107678692,LOC107588877,LOC107690059 other downstream 670308 20416203 ~ 20429348 (+)
gbp2 LOC107678697,LOC107602627,LOC107690079,LOC107721763 other downstream 721373 20467268 ~ 20473524 (+)
G13882 LOC107749119,LOC107602627,LOC107721764,LOC107659530,LOC107721763 other downstream 735769 20481664 ~ 20485218 (+)
LOC122326305 LOC107749119,LOC107602627,LOC107566983,LOC107690079,LOC107721763,LOC107721764,LOC107678697 other downstream 747279 20493174 ~ 20508391 (+)
G13998 LOC107659744,LOC107749160,LOC107563810,LOC107563823 other downstream 1418047 21163942 ~ 21164822 (+)

Expression


Co-expression Network