brinp2 (brinp2,LOC107658350,LOC107562711,LOC107722070,LOC107720848,LOC107700985)


Basic Information

Item Value
gene id brinp2
gene name brinp2,LOC107658350,LOC107562711,LOC107722070,LOC107720848,LOC107700985
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 15948412 ~ 16024650 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043220780.1
TGCTTTCCTGAAAGACTTGGAGTAGCTCTCCTCTGCGCGAGGCTCACCGTTTTGGGGCTTGGCAGTGAGTGATGACCACAGCACGGGCAGCTCAAGTCTAGCTCTAGCAatctggcacacacacacactaaaaaaaacacaaagagaaagagagagagacagtggaTGTCACAAATGAACCGTGGCAGGTGCAGTTTTTTCTACTTGGAAGAAGCTGGATAATGCAAATGAGTTGAAAGGAGAGAACAGCTTCGTATGGATTTATCTGCCTGATTGTAATCTGATGTGATCCTACTTGTTTTGGAAGATCACACATCGCTCACGAGGACCCAAACTGCTTTTTTCCTGCTTggacaaaaaaatttatttctggGACTTTGCGTTCTAAAAAGAACTGGTCTTAAAGTTTCTGCATTCAATTTCTCCAAatcataaattgaaaaaaagaaactaatgGCTATCAAACATTTTAAGCGCACTCATAAGGGGTGCACTTAGCTCACTTTCTTCAGAGCGCTAATACAATGCCTGGATTACCCTTTTGACTGCCTTGTGAACCCGTGTGAAAGCACCGCGGAGGAGGTACGGCGGGGGGCTGAGCGGGTGGGAGCTGCATTCCTCCACTTGAGAGCGAACCGAGAATCCAGCATCCTGACTGCCGCTACAAGCCGATCGGATACAAACGCTGTAGGGACAGGAGTGGAACCACCCTTCACGGTCTGGGTCAAAGGGATTGGCAGAAGAATGCTGGCGCCAGGTGCCCAGGGGCAGGATGGCGTTGTGTTGGCAGAGAAGTACAGTTGTTAGATGGTTCCTCTTGATGCTCCTGTGGCACTGGGCACCTCTGGGCCCACTGAGCTGGTTTCTGGCTCTGGCTGAGCGTCTGGACCAGAAGACCTCACCGTTCTCTTCTATCTCCGGCCGGAGCAGCGGCCAGCTGGACTGGCTCTTGTCTGATAAAGGGCCCTTCCATCGCTGTCCAGAATACACAGAGTTCAAAGAACGCTTCCAACAAGGCTTCTCCACACGCTACAAAATCTACAGGGAGTTTAGTCACTGGAAAGTGAACAGCTTGGTGACAGAGAAGAGAGACTTCTTCAAAGCCCCACTGCCTTTGGCGCCCGAGTTTTTACGCAACCTCAGGCTTCTGGGGAGAAGGCCGAGCCTTCAGCAGATCCATGAAAATCTGATCAAGAAATATGGCACTCATTTCTTGGTATCAGCCACATTGGGAGGAGAGGAGTCACTCACGATCTTCTTGGACAAACAGAAGCTGAGCAAAAAGTCAGAGGGCAACGGAAACAGCTCTGTGGTCTCCTTAGAAATCTTGCACCAACTGGCGGCGTCGTACttcacagacagagagagcacCCTGCGAAGACTCCACCACCTGCAGATCGCTACATCTGCCATCAAGGTAACAGAGACCAGAACGGGGCCTCTTGGATGCAGTAACTACGACAGCCTGGATTCCGTCAGCTCCGTCTTAGTGCACAGCCCAGAAAATAAAATCCACCTGAAAGgtctacAGGATGTGCTTCCTGAGTTTCTGCGGAATCGTTTTGTGGAGGCGGCCCTCAGTTATGTGGCGTGTAATTCAGAGGGCGAGCTACTGTGCCGCAACAATGACTGCTGGTGCCGCTGCTCCGCAAAGTTCCCTGATTGTAACTGCCCCTTCACAGACATCAAAGCCATGGAAGAGAGTCTGCGAAAGAGCAAAGAGTCCTGGATCAACCTCAACAATGACTTCATGGACTCAGATGATTTCAAGGCCTTTCTCAAGAAATTGCCAACAGatcattttttaaacacttcTGCTGTCTTAAAGTTTTGGACGTCAGACCTGGTCCTGCAGAGACGTTACGGTCTGCTGGAGGCGAGCACTAAAGTGGTGCTGGGAAAAGCCATCAAGATTGTGCGCAAACTCTTCACTCTCAGCAAGCGCTGTCCTACACAGCCAAAGATCAGCCTGCCTAGAGAAAGGACTCTGGGTTTTTGGCTCAACAAAGCCCAGTCTCTGTTGTACTGCAGTGAACATGGTGTGTACGGCACCTTCTCGGAGGAAATGCAGGGCTGCATCTGTGCCACTGAGCAACGCACTGTCTGCCAGGGCAACGTGCCATGTAACGTGGGTGAAGGGACCCTGTGCTCGTCCTGCGCCCCAGACAACATCACCCGCTGTGGCACATGCCTCCCAGGCAGCATCCTCCACATGGGATTCTGTCGCCCCAACATTGCCAACTCTCTGGACCACTACGTCAACTTTGACTTTGACATGCCAGACGCAGAAATGCGTTACCTCCTCCAAAGGCTCGACAGCCGCATGGAGGTCCACGCCATCTACATCAGCAACGATGTGCGTCTGGGAAGCTGGTTCAACCCCGCGTGGAGAAAGCGCATGCTGCTCACCCTCAAGAGCAACAAGAACAAGTCCAACCTCATCCACATGCTGATGGGGATCTCTTTCCAGATCTGTTCCACCAAGAACAGCACACTGGAACCCGTGCCTGCTATCTATGTCAACCCCTTCGGGGGCAGCCACTCCGAGAGCTGGTTTATGCCCGTCAACCAGCAGGACTTCCCAGACTGGGAAAGAACTAAATTGGACGCCTCGCTCCAGTGCTATAACTGGACCCTCGCTCTTGGCAGCAAGTGGAAGTCCTTCTTCGAAACGGTGCACATTTACCTACGCAGTCGCATAATCACAGATGATCCCACCGCCAATGAGACCCTTTTTTACGAGCCGCTAGACCTGGACGACCACTCGGCCAACCTGGGCTACATGAAAATCAATAGCTTGAAGGTCTTTGGCTACAGCATGCACTTTGATCCAGAGGGTATCAAGGACCTGATCCTGCAGTTGGACTACCCGTATACACAGGGTTCGCAGGATGCGGCCTTCCTGATGCTTCTGGAGATGAGGGACCGTATTAACCGGCTCTCTCCGCCGGGAGCCCAGCCGCTGGATCTCTTCTCCTGCCTGCTGAGGCACAGGCTCAAGCTTTCGTCCAGCGAAGTGGTGCGCATTCGGGAGGCGCTCCAGAGTTTCAACTCCAAGCTCCCCAACTCCACGGAGCCAGAACTCAGCCAGCTGTGCAGCTAGCTCAAATGAGCCTCTGTCGCTCATTTTTGCCTGCCTGTGagaatgtatttgtaaatgtgatgagagagaaagggaaaagaAATATATTGTCAGTGTGCGTGTAAATGTTTGTGGATGAGATTGTCTTTGAATCCTCTTCCTTTGGGCAGCAATTCTAAGAAGCAGAATTTCTGATTGTGACTGATACAGGAGAACCTTAGAAGCCGTATGTTCCCAGAATATTCCCTTGCTGGGAAAACCTTGTTGGATCTAGCCTACAGTCAAACTGCTTAGTGTCTTTGAGTAAGAGTTCCTTTTGAGACGATGGGGATTTTAACTAAGTGGACTGCCTCTACATGATTcatgaaaaagaacattttaagtgAGATTATATAGCTACGATTTCTTAGCACGTATGTGCTGAAGTTGTAGTTATTCTTGGTGATGTCATTGTTCAAGACGAATCCAGAGAATTGATCTATTCCAATGTAAAGTGTCAGAGAACAGTGGTCCAAGGGTTATAACAATCAGCAAAGAGTCAAATCCgtacttttctattttatctgGAGTCACAAATCCTGTATTGTGAGATCTGTATATCTGTATTTAATGTCGGACTAAATTGCCAGAATGTTGAATAGAAAATCCTTTGTATTCAGAGATATGGCTAAACCAAAAGGTAAACACGAAAGCAAATTGAATGGCAAAATttctttatgttatttttttattatttattttttttattttttttatgttcactgAAATCTCTTTTAAGAAGGCAGCCGTAAGGTTGCAGTACATTCTTACAATATTGTTTTGAACAGGTTTGTGGGCCGCTTTGTAAATAGCCTACTGCTCATTTCATTCAAGACGTGAAAAGCTTCACATTGCTTCTTGGATATATACAGATAAACACccatatttgtacttttttaaaagtacaaagaccaaaaaaaaacacacacacacacacttcaacatAAAACAATTGCCTTACGAAGTGAAATCTCTGTTCTGATATCAAAGCACACCTGGCTGTATGTCCctttttaagacaaaaaaagaagatattttttctCGTTCTTTTTTCCTCTACTAAATTCTGATTTCAATTATAGTGACCTCTGATCTGTAAATGTCAGTTTTTAATTGAAGTATTATATGAGGAGTTCATTAAATGTTATCTATGTGCAAATACAGAGCAACACTTACATCACCTGGATCAATAGCTTATGTTTTCCACAACTGCTTTTCTATTAGACATGAAGAGGCACAGCTGTAATACATGAATTCATTTAGTATCTCTACATCTAGAGGCAATTATTTCCACTCAACATTTAATAACCATACATGTACTGCTTAAGTGTTCTTGATTAAGTTACTTTGGTTGTAGCATTTGTCAGCACAAACAACCACAGAATTACAGCCTTTGACAACACAGAGCATTTATTacagctttttatataaaactggAATGTGTGGAAATGTCTGAAAATTGTGTATATgcatcaacataaaaaaacgaTCAGTTTTCTGTCAAGATAAGATGGATCGCTCAATATATGGGGAGCAACTTTTACAGCactacataaaaaacaaaaaaaaagaataaaaaagtgcaatttATGCGGTTGTCATGGAGAGCTGTAGGACCTTCACATTGTCTGTCACGATATATCTGTGACTCAACTGTGAAGGGGGAAAAACATTCTCACTAAATTCAGAAGATGGAAATCACAGGGAGTCTGTAAATATGAGTTGTTTATCTTAATGTCTAAGACAGGAATCAGTTTTTCGCCCTTCAACAAATTGTCAAGACAGTGAAGGGCATCTAATCAATCACAACAGCCCTATGTAAACTGGCATAGGCTTGCTCTTGAGAAACGGAGtctgaatatttctttattttttgatttatgaCTAAACTGCCttacagtgtattttttggtaacactttataataactttcataaattatacttataatatatatactgcatactACTGTGCAAAGGTTTGGGattagtaaaactttttttcaaataagtcttttagtgttttatgctttatatactttaaaaatgtaatttattcctgcaatggcaaagctgaattttgttattataaatgttgaaatcagttgtgtgtgt

Function

symbol description
brinp2 Predicted to be involved in cellular response to retinoic acid; negative regulation of mitotic cell cycle; and positive regulation of neuron differentiation. Predicted to act upstream of or within regulation of cell cycle. Predicted to be active in dendrite; endoplasmic reticulum; and neuronal cell body. Is expressed in several structures, including fin bud; gill; head; heart; and muscle. Human ortholog(s) of this gene implicated in oral squamous cell carcinoma. Orthologous to human BRINP2 (BMP/retinoic acid inducible neural specific 2).

NR:

description
PREDICTED: BMP/retinoic acid-inducible neural-specific protein 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043220780.1 True 5235 mRNA 0.45 8 15948412 16024650

Neighbor

gene id symbol gene type direction distance location
cenpl cenpl,LOC107720853,LOC107599910,LOC107657424,LOC107722063,LOC107700989,LOC107557192 coding downstream 88321 15856239 ~ 15860091 (-)
eif2b3 eif2b3,LOC107722074,LOC107599900,LOC107700990,LOC107720854,LOC107558289 coding downstream 115239 15803479 ~ 15833173 (-)
ptch2 ptch2,LOC107557169,LOC107700991,LOC107720855,LOC107599897,LOC107722076,LOC107657459 coding downstream 152115 15769765 ~ 15796297 (-)
atp6v0b atp6v0b,LOC102788333 coding downstream 266386 15676203 ~ 15682026 (-)
b4galt2 b4galt2,LOC107657457,LOC107599894,LOC107700994,LOC107557142 coding downstream 273538 15585517 ~ 15674874 (-)
tnn tnn,tnw,LOC107722078,LOC107658358,LOC107678933,LOC107726927 coding upstream 433107 16457757 ~ 16485204 (-)
nmnat2 nmnat2,LOC107658365,LOC107563562,LOC107678925,LOC107557267 coding upstream 663975 16688625 ~ 16698623 (-)
LOC122356645 LOC107709317 coding upstream 823041 16847691 ~ 16849363 (-)
LOC122324462 LOC107709317 coding upstream 827287 16851937 ~ 16852961 (-)
LOC122327065 NA coding upstream 831465 16856115 ~ 16856779 (-)
LOC122356097 NA non-coding downstream 193990 15718628 ~ 15754422 (-)
LOC122359617 NA non-coding downstream 394808 15547035 ~ 15553604 (-)
G12313 ccr9a,LOC107579348,LOC107733890,LOC107657446,LOC107730785,LOC107557055,LOC107700981 non-coding downstream 707586 15237959 ~ 15240826 (-)
G12308 NA non-coding downstream 724957 15223211 ~ 15223455 (-)
G12199 NA non-coding downstream 1013387 14934769 ~ 14935025 (-)
G12567 NA non-coding upstream 274522 16299172 ~ 16299744 (-)
G12585 NA non-coding upstream 420313 16444963 ~ 16445224 (-)
G12619 LOC107722060,LOC107563589,LOC107658360,LOC107559063,LOC107678928,LOC107726916 non-coding upstream 473053 16497703 ~ 16498417 (-)
G12614 plk3,LOC107563563,LOC107722069,LOC107658359,LOC107557223 non-coding upstream 478392 16503042 ~ 16504056 (-)
G12620 NA non-coding upstream 517833 16542483 ~ 16542771 (-)
ccdc24 ccdc24,LOC107657456,LOC107599905 other downstream 368706 15559663 ~ 15579706 (-)
smarcd3a smarcd3a,smarcd3,LOC107657439,LOC107599876,LOC107709803,LOC107556978,LOC107718026,LOC103039772 other downstream 794423 15133971 ~ 15153989 (-)
faim2a faim2a,LOC107718029,LOC107701017,LOC107556958,LOC107657438,LOC107709826 other downstream 820921 15120587 ~ 15127491 (-)
adcyap1b adcyap1b,adcyap1,LOC107713980,LOC107686049,LOC107751550,LOC107664073 other downstream 1338146 14578995 ~ 14610266 (-)
LOC122328470 ptbp1a,ptbp3,LOC107602545,LOC107674042,LOC107732511,LOC107584874,LOC107558691,LOC107658670,LOC107744247,LOC107729315,LOC107688524 other downstream 2384047 13553773 ~ 13564365 (-)
pappa2 pappa2,LOC107722077,LOC107568983,LOC107678935,LOC107726923,LOC107658303,LOC107558342 other upstream 200073 16224723 ~ 16268835 (-)
LOC122362257 LOC107658348,LOC107563587,LOC107678922,LOC107726920,LOC107722065,LOC107559085 other upstream 458510 16483160 ~ 16512019 (-)
G12658 lamc1,LOC107678923,LOC107726890,LOC107557259,LOC107722047 other upstream 646926 16671576 ~ 16673710 (-)
G12839 NA other upstream 781611 16806261 ~ 16806738 (-)
G12841 NA other upstream 797975 16822625 ~ 16823073 (-)

Expression


Co-expression Network