ttpa (ttpa,LOC107688513,LOC107729218,LOC107584770,LOC107674130,LOC107602535)


Basic Information

Item Value
gene id ttpa
gene name ttpa,LOC107688513,LOC107729218,LOC107584770,LOC107674130,LOC107602535
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 12355888 ~ 12359062 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043220880.1
CCCCCTTTTTACGTAACGCCTCGGCTCAGAGAGCACGATGACATTCGCTCGACTCGCGCAGATATGAAGTCTGAAGAAGTTGACGACGCGGAGGAATTAAACGATCTGCCTGTTGATTCCGTTCGGATCGCGCCGTATTTGCGTGAACTGAAACAAAGGGCAGCGGCAGAAGTAAGCATTCGACACTTGACTTTGACGGAGGCTTTTTTGATACGGTTTCTGCAGGCGAGAGACTTTGATGTGGCACTGGCTCTCAAGcTTTTGATTAACTATCATAAATGGAGACAAGAATGTCCAGAAATAACAACCGATCTGAGACCATCATCCGTCATAGGACTTCTGCAAAACAATTACCATGGAGTTTTGAGATCACGAGATGACGCTGGAAGTCGAGTTCTAGTCTATCGGATTGGTCAGTGGAACCCCAAAGAATTCACCGCTTATGAGGTTTTCCGTGTGAGCCTCATTACATCAGAGCTGATTGTTCGAGAATGGGAGACGCAAAGAAATGGACTCAAAGCAATTTTTGATCTCCAAGACTGGTGCTTTGCGCATGCCCTGCAGATAAATCCTTCCTTGGCAAAAAAGATATCTTCGGTGCTGACAGACTCCTTTCCTTTGAAAGTACGTGGCATCCATTTGATaaatgagcctatttttttCCGTCCCGTCTTTGCCATGATCCGTCCGTTTCTTCCAGACAAGATCAAACAGCGGattcATATGCATGGAAGTTCGTATGCCCGAAGTCTCAGCGATTTCTTCCCGAAGGCTATCCTCCCCCCTGAGTATGGAGGAACCGGTCCCAGCATAAACGATGCGTGCCACGATTGGACTGAGTACATCATGCAGTCTGAAGCCTATCTCTATAGTCTCTCTATAGATTTAGGTGGAGGAGATGCTTCTCAGTCATCTGCCTATGCGTGATTGTAATGAAGGTACTTCTTACCATGTGCTCTTTGTGCTGGATAATAACAGATTCTGCTGGGCAGGTTAAATGCTTTCCTTGAAAATCAAGATAATATTGCTgacttaaagtaatagttcgcccaaaaaatTTATGTATTCACCCACAGGCCGTTCAAGTTCTCCACTGGAAcagatttggacaaatttagcattacatcaccaGGTCAATAGGTGCCATTAGCATGAGAGAAAAACTTTACAGTAATCCACAAGAAATGaataacacacatatatatatatatatatatatatatatatatattttgttgcttTCAGCTAAAATAAGAGTCCTCTAtgcataatattgctttctccataGGACAAATCATCTGATTTgaataagaaaagaaatattCACAGATCAAGCTCTTTTTAGAAGTCCAAAGTGCTTCAAAAGAGATTCTCGGTTGATGGCTTGAGAGTGAGTACagttttttggtgaaatatacctttaaattgtaaagcattataatatgtatgctttacttttattctttactttttttttatcatattgcaCATGAACTAATGATGCAGCTGTTTAAATTGTCTGCCCAACTCTAATTTTCCagactggaaaaaaacaaacattaattcatatttttgaatgaTGTGATTTTATTGAATTCCATTCCTCGCAGAGATTGATTGCAAATACATGATATACCTCTGAGGATAAAATATAGCATCAGATATTCTGTTACCTTTATAAGGTTTCCACAGTCACTTGTATATAACACAAGTAATGTACAATGTTGTGCATGACCAAAATATCAAAGTGCCTTTCCTCTTTTCCTCGTGAGATGtcattgcttttattgttgTATCTTCATAACAGTGGACATAACTCAGGATGTTAAACAAGTCTCTGTGCTTCTCGACGTTTGATATCAATCAAACTGATGCATCATTATACTGATGCTTTTTAAGTGAAACAATCTTTAATATAACTGTAAACTACAGCATTTGCGATCCTTGGCTgtattccaaataaataaacggcTGAAGACATGTACTTGTTTAGTCTGCACCAAGTGGGAATATTAAATAGCACTTTGGTCTACTGCCTTTTGCTCCGACTCTTAAACAAATCTAAACAGAGACTAATGACCTAACTGGAACTCTTTGTGTTTACAGATTTCCTTAAATGTGAATTTCTGAAACCGTGTATATAATCTAGTTtagtttattgcattatttgtgTCAGACAGTGTCTGATGAAAGTAGAAAAAGAcagttttacattatttaattgtgCCGTCCTCACTTGTTATCAAACTATGAAtatatgactgttttttttaattgaatgtacattttttaaataaaaaagtatatacagACATATTAATACAACTCAAATAAACTTGGCAGCAAAACAA
>XM_043220887.1
CCCTGCCCCCTTTTTACGTAACGCCTCGGCTCAGAGAGCACGATGACATTCGCTCGACTCGCGCAGATATGAAGTCTGAAGAAGTTGACGACGCGGAGGAATTAAACGATCTGCCTGTTGATTCCGTTCGGATCGCGCCGTATTTGCGTGAACTGAAACAAAGGGCAGCGGCAGAAcTTTTGATTAACTATCATAAATGGAGACAAGAATGTCCAGAAATAACAACCGATCTGAGACCATCATCCGTCATAGGACTTCTGCAAAACAATTACCATGGAGTTTTGAGATCACGAGATGACGCTGGAAGTCGAGTTCTAGTCTATCGGATTGGTCAGTGGAACCCCAAAGAATTCACCGCTTATGAGGTTTTCCGTGTGAGCCTCATTACATCAGAGCTGATTGTTCGAGAATGGGAGACGCAAAGAAATGGACTCAAAGCAATTTTTGATCTCCAAGACTGGTGCTTTGCGCATGCCCTGCAGATAAATCCTTCCTTGGCAAAAAAGATATCTTCGGTGCTGACAGACTCCTTTCCTTTGAAAGTACGTGGCATCCATTTGATaaatgagcctatttttttCCGTCCCGTCTTTGCCATGATCCGTCCGTTTCTTCCAGACAAGATCAAACAGCGGattcATATGCATGGAAGTTCGTATGCCCGAAGTCTCAGCGATTTCTTCCCGAAGGCTATCCTCCCCCCTGAGTATGGAGGAACCGGTCCCAGCATAAACGATGCGTGCCACGATTGGACTGAGTACATCATGCAGTCTGAAGCCTATCTCTATAGTCTCTCTATAGATTTAGGTGGAGGAGATGCTTCTCAGTCATCTGCCTATGCGTGATTGTAATGAAGGTACTTCTTACCATGTGCTCTTTGTGCTGGATAATAACAGATTCTGCTGGGCAGGTTAAATGCTTTCCTTGAAAATCAAGATAATATTGCTgacttaaagtaatagttcgcccaaaaaatTTATGTATTCACCCACAGGCCGTTCAAGTTCTCCACTGGAAcagatttggacaaatttagcattacatcaccaGGTCAATAGGTGCCATTAGCATGAGAGAAAAACTTTACAGTAATCCACAAGAAATGaataacacacatatatatatatatatatatatatatatatatattttgttgcttTCAGCTAAAATAAGAGTCCTCTAtgcataatattgctttctccataGGACAAATCATCTGATTTgaataagaaaagaaatattCACAGATCAAGCTCTTTTTAGAAGTCCAAAGTGCTTCAAAAGAGATTCTCGGTTGATGGCTTGAGAGTGAGTACagttttttggtgaaatatacctttaaattgtaaagcattataatatgtatgctttacttttattctttactttttttttatcatattgcaCATGAACTAATGATGCAGCTGTTTAAATTGTCTGCCCAACTCTAATTTTCCagactggaaaaaaacaaacattaattcatatttttgaatgaTGTGATTTTATTGAATTCCATTCCTCGCAGAGATTGATTGCAAATACATGATATACCTCTGAGGATAAAATATAGCATCAGATATTCTGTTACCTTTATAAGGTTTCCACAGTCACTTGTATATAACACAAGTAATGTACAATGTTGTGCATGACCAAAATATCAAAGTGCCTTTCCTCTTTTCCTCGTGAGATGtcattgcttttattgttgTATCTTCATAACAGTGGACATAACTCAGGATGTTAAACAAGTCTCTGTGCTTCTCGACGTTTGATATCAATCAAACTGATGCATCATTATACTGATGCTTTTTAAGTGAAACAATCTTTAATATAACTGTAAACTACAGCATTTGCGATCCTTGGCTgtattccaaataaataaacggcTGAAGACATGTACTTGTTTAGTCTGCACCAAGTGGGAATATTAAATAGCACTTTGGTCTACTGCCTTTTGCTCCGACTCTTAAACAAATCTAAACAGAGACTAATGACCTAACTGGAACTCTTTGTGTTTACAGATTTCCTTAAATGTGAATTTCTGAAACCGTGTATATAATCTAGTTtagtttattgcattatttgtgTCAGACAGTGTCTGATGAAAGTAGAAAAAGAcagttttacattatttaattgtgCCGTCCTCACTTGTTATCAAACTATGAAtatatgactgttttttttaattgaatgtacattttttaaataaaaaagtatatacagACATATTAATACAACTCAAATAAACTTGGCAGCAAAACAA

Function

symbol description
ttpa Predicted to enable lipid transfer activity; phosphatidylinositol bisphosphate binding activity; and vitamin E binding activity. Acts upstream of or within central nervous system development and chordate embryonic development. Predicted to be active in late endosome. Is expressed in several structures, including eye; immature eye; liver; neural tube; and tail bud. Human ortholog(s) of this gene implicated in familial isolated deficiency of vitamin E. Orthologous to human TTPA (alpha tocopherol transfer protein).

NR:

description
PREDICTED: alpha-tocopherol transfer protein

GO: NA

KEGG:

id description
K24455 TTPA; alpha-tocopherol transfer protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043220880.1 True 2351 mRNA 0.38 5 12355893 12359062
XM_043220887.1 False 2269 mRNA 0.37 5 12355888 12359062

Neighbor

gene id symbol gene type direction distance location
lrrc42 LOC107729432,LOC107586495,LOC107602539,LOC107688527,LOC107682545 coding upstream 18962 12333787 ~ 12336926 (+)
LOC122328950 NA coding upstream 74384 12281372 ~ 12281504 (+)
rps8a rps8a,rps8,LOC107674081,LOC107688507,LOC107602544 coding upstream 74681 12278732 ~ 12281207 (+)
LOC122328989 NA coding upstream 75229 12280590 ~ 12280659 (+)
LOC122328992 NA coding upstream 75874 12279911 ~ 12280014 (+)
asph asph,LOC107729161,LOC107584723,LOC107688512,LOC107714857,LOC107602531 coding downstream 2658 12361720 ~ 12376736 (+)
LOC122360148 LOC108278063 coding downstream 10687 12369749 ~ 12371452 (+)
impa1 impa1,impa1.3,LOC107688552,LOC107586492,LOC107602533,LOC107729422,LOC107714831,LOC107674158 coding downstream 17895 12376957 ~ 12380610 (+)
cdh7a cdh7,LOC107584702,LOC107602530,LOC108432272 coding downstream 129151 12488213 ~ 12541573 (+)
tesk2 tesk2,LOC107728975,LOC107679327,LOC107602527,LOC107714850,LOC107674209,LOC107585988 coding downstream 270969 12630031 ~ 12650410 (+)
G11505 NA non-coding upstream 16839 12337667 ~ 12339049 (+)
G11419 NA non-coding upstream 254762 12100875 ~ 12101126 (+)
G11207 LOC107688485,LOC107585026,LOC107550612,LOC107709892,LOC107722651 non-coding upstream 737025 11614241 ~ 11618863 (+)
LOC122328936 NA non-coding upstream 742322 11609251 ~ 11613566 (+)
G11191 NA non-coding upstream 899024 11456326 ~ 11456864 (+)
G11590 NA non-coding downstream 186291 12545353 ~ 12545592 (+)
G11593 NA non-coding downstream 255313 12614375 ~ 12614596 (+)
G11595 dsela,LOC107679326,LOC107584692,LOC107728919,LOC107714854,LOC107674195 non-coding downstream 256933 12615995 ~ 12621414 (+)
G11618 NA non-coding downstream 338024 12697086 ~ 12697294 (+)
G11622 NA non-coding downstream 386750 12745812 ~ 12759891 (+)
pld1a pld1a,LOC107688495,LOC107550602,LOC107680234,LOC107722545,LOC108442335 other upstream 418298 11908073 ~ 11937590 (+)
mast3a LOC107722547,LOC107688474,LOC107680242,LOC107550619,LOC107709878,LOC107586070 other upstream 848184 11482104 ~ 11507704 (+)
rps28 NA other upstream 911317 11422090 ~ 11444571 (+)
mrpl34 LOC107688463,LOC107585198,LOC107722555,LOC107680228 other upstream 1014777 11339735 ~ 11341111 (+)
fitm1l LOC107589905,LOC107718171,LOC107585187,LOC107688462,LOC107722554 other upstream 1017419 11303678 ~ 11338469 (+)
LOC122358236 NA other downstream 264761 12623823 ~ 12626387 (+)
rnf152 rnf152,LOC107729101,LOC107679332,LOC107567413,LOC107674343,LOC107714840,LOC107584540 other downstream 508867 12867929 ~ 12874008 (+)
G11854 jph1b,jph1,LOC107584332,LOC107550709,LOC107746914,LOC107732545,LOC107664083,LOC107686034,LOC107740042 other downstream 1816302 14175364 ~ 14179615 (+)
plxdc2a LOC107686089,LOC107713976,LOC107751571 other downstream 2387045 14746107 ~ 14753161 (+)
ackr4a LOC107664061,LOC107751559,LOC107556724,LOC107751558,LOC107751560,LOC107713978,LOC107586293 other downstream 2417260 14776322 ~ 14782977 (+)

Expression


Co-expression Network