rab6bb (rab6bb,rab6b,LOC107589854,LOC107693724,LOC107718122,LOC108432504)


Basic Information

Item Value
gene id rab6bb
gene name rab6bb,rab6b,LOC107589854,LOC107693724,LOC107718122,LOC108432504
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 9989129 ~ 9995620 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043220897.1
GCGCACGGGGCTGGAGAATTGACATCGCGGAGCAGCACTGCAATATCCATCGATTCGGGACCGAAGATTATACATCTGCATTCTCGCAAGACTGGTGCCACCTGTACATATTTATCCATACCAACTGTGTCATTAAAGCAATCATGTCCATGGGAAGTGACTTTGGGAACCCTTTACGGAAATTCAAACTTGTTTTTTTAGGAGAGCAAAGCGTTGGGAAAACATCGCTGATAACAAGGTTCATGTATGACAGTTTTGACAATACTTATCAGGCAACCATTGGAATTGACTTTTTATCAAAAACCATGTATCTGGAGGACCGAACTGTGAGGTTACAGCTCTGGGACACCGCGGGGCAGGAGCGTTTTAGGAGTCTTATCCCGAGCTACATTAGAGACTCCACAGTGGCCGTGGTGGTGTATGATATCACAAATGTCAATTCATTCCAGCTAACCTCCAAATGGATTGATGATGTCAGAACAGAGAGGGGAAGTGATGTCATCATCATGCTGGTGGGCAATAAAACAGACCTAGAAGAAAAGAGGCAAATCACTATAGAGGAGGGCGAACAGCGGGCCAAAGAACTGAATGTGATGTTCATCGAGACTAGTGCAAAGACTGGCAGCAACGTTAAACAGTTGTTTCGGCGAGTGGCTGCCGCTTTGCCCGGAATGGAGAGCCTGGATGATAACAACAAAGAAGGAATGATTGACATTAAGCTGGACAAACAGCCAGATCCTCCGGCCACTGAAAGCGGGTGCTCCTGTTAGTAGAAAGCGGTTCGGTCCTTCATTAACACCACATGCTTGTTCTGTTGCTTCCTATGGGTCCACGTCCAGTTGAACTTTATGATCGGATATAGGCTTTTTACATCTGAATGGGTCTAAAATTATATTCCTCAGTtgcaagaacaaaacaaaacaaaaaaaaaaaacactgtctgTTTAAATTGCCAAAATAATATCATAGGTAATTCAAAGTGACTAGCTAACAGATTCATAAAAGACAGGAAGTGGCATGTGTACCATCTTCGGACAAACAACATTCAGAGTGGATTATTGGttgttatgttttgtatttttgtacattacAAAAAGCACTAAACGAtgccttcacaaaaaaacaaacaaaaaaaaaacgagtttAAGATTCGAGAAGGGCGACAGAGTAGTCTTTCGTCCATAGCATGCATGTAAGACAACTTTTAGAATCTGTCATGTCCTTTGGTCCATACACATCGATAGCAACGAAACGAAGAACTcagaattaatgaaaaaaagaaaaaagagagaggtcCTGTTCAAAGTCTTAGTGTGGGTCTGTGTATACAGTACATCCTACATGCTAATCCAGTACCAGCCTCCTTGAGAGGTGCGTGTACTAACCCGGTTAACCTTTAAAGTGCCGTGGCACTGTCGCAAAGAACCAATGGATTTTTCTGCTAGCTTCATGTATACACTTTAGATCCGCCAGGCGGTACTGTATtgtatatagtatttatattattgtgaaCATCCATCATTTAGACGTGGTTTATGTTCACTTGTACAAatgtttccttctttttttcttcttttttttatatgacaaGGGCTTCACTTTAATTTTCTCAGTCTCACCTGTAGCCATACACTGGTAGTAAAGTATTACTTATGGTTTGGGCATTTTGCTGTTGCCTTATACCGTTTTACTCAtccaccgtttttttttttccctgaaagaATACGTTATTACTGTTAAACCCCTTTTAATGGATGTTTTACAGGAATATATggttttcactttttaattataattttgtatttgcagCCGACTAGAACTAAAACGAATGAGATAAGCGTCATTCGTCCGGTTGGGGTGAGGAAGGCGATTTTGAGGTGAGCCTTAGGAAACAacagattttcatttcaaatacgCGCACTTTCTTCTGGGTTCTGACAAGGAAATGTATGGTTCACCACATCCTAAAGTGATGAAACAGGCAAATGATTGTCGTATCCTTTGTAGTAAAGCTCTCGTAGTCTCCCGCACATGCTGAATGGATGTGTagattaaaattcaaaatgctAGTCGTAGGCGAACACTTTCATCCTAAAACAcgaaaacctttttaaaacagCGCTGAGCTGAGAGAGAATGTACCCCGCCTGTCGTCCACTCACAATATTCTGGTTATCGCAACAGTACGTTCAAGAAATGTGAGTTGTTTACGAATCTCTGGAAACGTAGtatctttaatgtatttgtttttgttttctattttgaattgTTTACATAAATGCACTGATTAACACCACTGATTGTATAGAGATTAATTTAGGATATATTaggtatttataatatatttaatgttagtGCGAGTTTCTTTCTGGTGCCAATAATTCTaattaattgaaacaaaaaatggACATGAGGAATAACTGTGACTGAATTGTTGGTACTAGGCTTGACTTCAGCTTCTGGGATAATTTAAGGGGCCGCTGATATTAACTGTGGGGAGGGACTGAGGTTAATGAGTTTTGCATTGACAGGGCACAGAATACATCATGTATCACGTTCACATTTCTCGAGCCTCCGTTTCCTCTTGTTAGCTTTGTCATCTTTCACTTTTGTACACTAGTTGTGCCTTCTGTTATTGTGGCATCACAATGCAAAGCTTTCATTGTATGGCTACCTGAGAACACATACGTTGCGGAACGGTGGTCACTGACTGGTCGGCCAGACAACCGACGGATTTATGATCAAATTGTTGTATTCACACCATCTAGCCAATTCACAGCGGTCGAGAACAATTGCAGAACAGTCCCGTGCAAGCGGAAGGTTGTATGTAAAACAGGAAGTTGCTGCTGATAGTGTGATGAGATCGAATCTGTCAGAGTTGTTGCCATAGGGTTGTGTAGAGCAGTGTAGTTGGCTCTTTATTCACTCTGTAAGGACATTTATGAGCATGACatctgtctgaaaaaaaaaaaatcaataaaatccatgtctTAATACCAAA

Function

symbol description
rab6bb Predicted to enable GTPase activity. Predicted to be involved in Golgi vesicle transport; intracellular protein transport; and retrograde transport, endosome to Golgi. Predicted to be active in Golgi apparatus. Is expressed in basal plate midbrain region; nervous system; and trigeminal placode. Orthologous to human RAB6B (RAB6B, member RAS oncogene family).
rab6b Enables myosin V binding activity. Predicted to be involved in Golgi vesicle transport; intracellular protein transport; and retrograde transport, endosome to Golgi. Located in Golgi apparatus.

NR:

description
PREDICTED: ras-related protein Rab-6B

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K07894 RAB6B; Ras-related protein Rab-6B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043220897.1 True 3001 mRNA 0.40 8 9989129 9995620

Neighbor

gene id symbol gene type direction distance location
aire LOC107589913,LOC107691773,LOC107718121,LOC107579220 coding downstream 1674 9981985 ~ 9987455 (-)
amotl2b LOC107693726,LOC107722615,LOC107691578,LOC107718124,LOC107589855,LOC107564722 coding downstream 15312 9966436 ~ 9973817 (-)
mknk2a mknk2a,LOC107693729,LOC107722535,LOC107564711,LOC107718128,LOC107589858,LOC107691640,LOC108432510 coding downstream 78256 9899917 ~ 9910873 (-)
csnk1g2a csnk1g2,csnk1g2a,LOC107722536,LOC107718129,LOC107589861,LOC107691647,LOC107693732,LOC106925954 coding downstream 92630 9880441 ~ 9896499 (-)
mfsd12a mfsd12a,LOC107693733,LOC107722641,LOC107564710,LOC107691677,LOC107718130,LOC107589862 coding downstream 110041 9872213 ~ 9879088 (-)
espnlb espnlb,LOC107691737,LOC107722507,LOC107718163,LOC107580328,LOC107589891 coding upstream 2024 9997644 ~ 10007589 (-)
kif1ab kif1ab,LOC107722550,LOC107691514,LOC107693723,LOC108432503,LOC107589853 coding upstream 12726 10008346 ~ 10033298 (-)
zgc:161973 LOC107722582,LOC107693721,LOC107718160,LOC107585707 coding upstream 45041 10040661 ~ 10045880 (-)
bokb bokb,LOC107693720,LOC107722584 coding upstream 53781 10049401 ~ 10053443 (-)
sept2 sept2,LOC107722571,LOC107693718 coding upstream 67143 10062763 ~ 10071463 (-)
G10773 NA non-coding downstream 61292 9926105 ~ 9927837 (-)
G10708 NA non-coding downstream 240389 9748387 ~ 9748740 (-)
G10621 NA non-coding downstream 382934 9605638 ~ 9606195 (-)
G10562 NA non-coding downstream 528045 9457163 ~ 9461084 (-)
G10569 NA non-coding downstream 538203 9450560 ~ 9450926 (-)
G10812 NA non-coding upstream 51198 10046818 ~ 10047373 (-)
G10869 selenof,sep15,LOC107693704,LOC107586130 non-coding upstream 162958 10158578 ~ 10160064 (-)
G10987 NA non-coding upstream 230598 10226218 ~ 10226856 (-)
G11057 NA non-coding upstream 670857 10666477 ~ 10666712 (-)
G11064 rpp40,LOC107722637,LOC107688445,LOC107689405 non-coding upstream 672022 10667642 ~ 10668967 (-)
si:ch211-267e7.3 si:ch211-267e7.3,LOC107722581,LOC107594654,LOC107718186,LOC107589917,LOC107677774,LOC107693699 other downstream 370656 9606323 ~ 9618473 (-)
plppr5a plppr5,plppr5a,LOC107722655,LOC107693754,LOC107677753,LOC107589876,LOC108441579,LOC107718169 other downstream 469348 9491563 ~ 9519781 (-)
abca4b abca4,abca4b,LOC107564534,LOC107680047,LOC107745690 other downstream 779088 9182056 ~ 9210041 (-)
zfyve9a LOC107700554,LOC107563295,LOC107677579,LOC107553256,LOC107732202 other downstream 1561225 8403327 ~ 8427904 (-)
G10213 NA other downstream 1881341 8106856 ~ 8107788 (-)
hfm1 hfm1,LOC107722645,LOC107586144 other upstream 84562 10080182 ~ 10095857 (-)
pkn2a pkn2,LOC107693716,LOC107585639,LOC107722607,LOC107718113,LOC107691687 other upstream 124353 10119973 ~ 10139585 (-)
lmo4 LOC107722609,LOC107693715,LOC107691760,LOC107589910 other upstream 145315 10140935 ~ 10143709 (-)
ca8 ca8,LOC107693711,LOC107585586,LOC107691405,LOC107589840,LOC107722503,LOC102778484 other upstream 318413 10314033 ~ 10320403 (-)
G11011 chd7,LOC107585562,LOC107722533,LOC107688517,LOC107718105,LOC107589837,LOC107689390 other upstream 380443 10376063 ~ 10378211 (-)

Expression


Co-expression Network