gbp2 (LOC107678697,LOC107602627,LOC107690079,LOC107721763)


Basic Information

Item Value
gene id gbp2
gene name LOC107678697,LOC107602627,LOC107690079,LOC107721763
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 20467268 ~ 20473524 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043221036.1
ATTAGTTTACTGTCATATAGCGGCGCGCGACCAATAGCTCGCAGCGCACTCGTGTGGTTAAACGGAGACGCCTTGTCACCCCAACCCTATGTTTAGCTGTTGGTTTTAAACGGGTGATTTCTGGGAAACCGCTGGCTGCAGCCGTTATCTCGGAGAATTAAATCATCGTACTTTCACTTTCACACATGACAACATCCGTGAGAGAGCGTGTCTTGCAAACGACTTctaaacacagacacacgcgAAGAACTGAAGGAGTCTCGGAAGAACGCTGTATGCTTTCTGCTGTTGAAACAAACCACTTTGCTAACGAGTCATGGCCTGCAGCAGGATCATGTCAGCTCCAGTGTGTCTCATTGGAGACGATGAAAATGGACATCTGCGTGTGAGAAAAGAGGCCAAAGACATTCTGGATGGGATCAGTGAGCCGGTGGTGGTGGTGTCTGTGGTTGGACTCTATCGTACGGGGAAGTCTTACCTTATGAACCGCCTGGCAGGACAACAGTCCGGCTTTGCTCTCGGCAGCACTATTGAATCAAAGACCAAAGGCATCTGGATGTGGTGTGTCTCTCACCCTAGTAAAAAAGGACACACTCTTGTGCTGCTGGACACAGAGGGACTTGGGGACGTGGCAAAGgGGGATGAGAAACATGACACATGGATCTTCTGTCTGGCTGTTCTTCTCAGCAGTACTCTAGTGTACAACAGCTTAGGAGTCATTGACAACACGGCACTGGAAAAGCTGCACTATATTACTGAGCTGACGGAGAACATTCGTGTGAAGGCAGAAGTAGATCAACATGAGGATGAGTCAGAAGATTTCATGCAAGTTTTTCCATCATTTGTCTGGGCTGTTCGGGACTTTACTTTGGAACTGAAAAGGGGAGATCAAGTAATAACATCAGACGAGTATCTGGAGGGTGCATTAAAACTCAAACCAGGTAGCTCACCTCAGACTGTGCAGTATAACCTTCCCCGTAGTTGTTTGCGGAAATTCTTTGCGGTGAGGAAGTGCTTTGTCTTCCCCCGGCCTGCTAGTACGCAAAACATGAGAAGAATGGAGGAGCTGACCGAGAAAGAACTTGAGTCAGAGTTTCTTGAGCAGGCAAACACCTTCTGCTGCTACATCTATGAGAACACAGAGCCAAAAACAGTCACTGGAGGTCGTACAATTACTGGAACAGCTTTGGGTAATCTCGCCGAGGTTTACATTGAGGCGATCCGCAGCGGGAAGATTCCTTGTTTGGAGAACGCAGTGGTGTCTCTGGCTAAGATCCAGAACGTACGTGCGGTGGACGAGGCCCTGCAGTTTTACATGACTGAGATGTTCAGCATGGCTCAGCTTCCTACGCGCCCAGAAGAGCTGTCCGACATCCACACAGATGCAGAGAAGAAGGCCATTGAAGTATTCATCACCATGTCCTTCAATGACAATGACCAGATCTACCAACAAGAGCTCATGGGAAAGATTTATAGTGAATATCAAGAGATGTGCCAGCAGAATCATGAAGCGTCTCGCATACAGTGTGAGGAGGTTCTGCGTGAGGTGTTTGATGAGCTGGAGAAAAGCGTTTCTAACGGATCATATTTGAAACCTGGAGGATACCAACAATACAGAGACTCGCTCAGACATCTGACCAGTGACTACAGAGAAAGAACACACTCACAAATAATGAGTGAAGAAGTGTTGAGTACATATTTGAGAGCTAAAGAAGCAGCTGGAAATATGATTCTACAAGCTGACCAGTCTCTGAACGCAATGGAACAGCAGAAAGAGGTGCAAAGACTAAAGAATGAAATTCTGGAGCAGCGCCAGAGAGGTCTAGAGGAACAGAACCGGTTACAGGAGCGGGTGTTTGAAGACATGCAGAGATCCCACGATGAGCATGTGAAACAGATCTTTAGTCAGAtggagagagagcaggagagaaTCAGGAGAGACAATGAACGCGTCCTGGAAGCAAAACTCAAGGAAAGTGAAGCTCTTCTGCAGCAGGGCTTCCAGCAGGAGGCAGCCCAGATGAAGAGTGAAATCGACAGGCTAAAATCAGACATGAATAAACAGGAGACGTCCCAACCCTCCACCATTAGCAAGGTTTTGGATGGTATCGGCACTGCAGCAACTTTGTTTTTGCCAGGTTTTGTTCCTAAATTAGCTGGTTTTGGTCTGTCCTTGGtttcaaaactgttttgaaaatggACATACATTTTTGACATACTTATAATATGCCATATTAACCAACAATCAACTGTCAAGCGAGCACTGTTTGCTAGGAACTATGAACAACACTGTTGTTATGATGAGGTGCCGCCTTCCCtttagtattaaaatgattcacaaaatCAGTGAATCCTGTTAAAAACCTTCCTGGGAACCTTCGATATCGGATACCAATATCTATGTCCGGTAACAGCTTTGACATTAATTAATAGTGTGGTACTTTCTTTGTGTTAAAAGTTTTAGATAATAGATCAGTTGTTCTTAAACTGAGGTAGTGtgtgtttacttttttgtttgcttgtaattagaaaaaaaagtcatttattttgacatcaTTTTAGGCTAAATGTGGTGACTGtacttttttgtgaaatattaaaaacatttcttttgacTGAA
>XR_006247459.1
ACTCTGACGAACGAGTTCACCTCACTGCCGATAAGgctatatttaaaacagcattgtGGTGAATTAGTTTACTGTCATATAGCGGCGCGCGACCAATAGCTCGCAGCGCACTCGTGTGGTTAAACGGAGACGCCTTGTCACCCCAACCCTATGTTTAGCTGTTGGTTTTAAACGGGTGATTTCTGGGAAACCGCTGGCTGCAGCCGTTATCTCGGAGAATTAAATCATCGTACTTTCACTTTCACACATGACAACATCCGTGAGAGAGCGTGTCTTGCAAACGACTTctaaacacagacacacgcgAAGAACTGAAGGAGTCTCGGAAGAACGCTGTATGCTTTCTGCTGTTGAAACAAACCACTTTGCTAACGAGTCATGGCCTGCAGCAGGATCATGTCAGCTCCAGTGTGTCTCATTGGAGACGATGAAAATGGACATCTGCGTGTGAGAAAAGAGGCCAAAGACATTCTGGATGGGATCAGTGAGCCGGTGGTGGTGGTGTCTGTGGTTGGACTCTATCGTACGGGGAAGTCTTACCTTATGAACCGCCTGGCAGGACAACAGTCCGGCTTTGCTCTCGGCAGCACTATTGAATCAAAGACCAAAGGCATCTGGATGTGGTGTGTCTCTCACCCTAGTAAAAAAGGACACACTCTTGTGCTGCTGGACACAGAGGGACTTGGGGACGTGGCAAAGgGGGATGAGAAACATGACACATGGATCTTCTGTCTGGCTGTTCTTCTCAGCAGTACTCTAGTGTACAACAGCTTAGGAGTCATTGACAACACGGCACTGGAAAAGCTGCACTATATTACTGAGCTGACGGAGAACATTCGTGTGAAGGCAGAAGTAGATCAACATGAGGATGAGTCAGAAGATTTCATGCAAGTTTTTCCATCATTTGTCTGGGCTGTTCGGGACTTTACTTTGGAACTGAAAAGGGGAGATCAAGTAATAACATCAGACGAGTATCTGGAGGGTGCATTAAAACTCAAACCAGGTAGCTCACCTCAGACTGTGCAGTATAACCTTCCCCGTAGTTGTTTGCGGAAATTCTTTGCGGTGAGGAAGTGCTTTGTCTTCCCCCGGCCTGCTAGTACGCAAAACATGAGAAGAATGGAGGAGCTGACCGAGAAAGAACTTGAGTCAGAGTTTCTTGAGCAGGCAAACACCTTCTGCTGCTACATCTATGAGAACACAGAGCCAAAAACAGTCACTGGAGGTCGTACAATTACTGGAACAGCTTTGGGTAATCTCGCCGAGGTTTACATTGAGGCGATCCGCAGCGGGAAGATTCCTTGTTTGGAGAACGCAGTGGTGTCTCTGGCTAAGATCCAGAACGTACGTGCGGTGGACGAGGCCCTGCAGTTTTACATGACTGAGATGTTCAGCATGGCTCAGCTTCCTACGCGCCCAGAAGAGCTGTCCGACATCCACACAGATGCAGAGAAGAAGGCCATTGAAGTATTCATCACCATGTCCTTCAATGACAATGACCAGATCTACCAACAAGAGCTCATGGGAAAGATTTATAGTGAATATCAAGAGATGTGCCAGCAGAATCATGAAGCGTCTCGCATACAGTGTGAGGAGGTTCTGCGTGAGGTGTTTGATGAGCTGGAGAAAAGCGTTTCTAACGGATCATATTTGAAACCTGGAGGATACCAACAATACAGAGACTCGCTCAGACATCTGACCAGTGACTACAGAGAAAGAACACACTCACAAATAATGAGTGAAGAAGTGTTGAGTACATATTTGAGAGCTAAAGAAGCAGCTGGAAATATGATTCTACAAGCTGACCAGTCTCTGAACGCAATGGAACAGCAGAAAGAGGGTACCATTTAAAACAGCTGCACACTTATCCATCAATCAAGGCTACACAAGACAGATTTTATTAAAGCACAAAAGAGTAACAGTGCAAAGACTAAAGAATGAAATTCTGGAGCAGCGCCAGAGAGGTCTAGAGGAACAGAACCGGTTACAGGAGCGGGTGTTTGAAGACATGCAGAGATCCCACGATGAGCATGTGAAACAGATCTTTAGTCAGAtggag

Function

NR:

description
PREDICTED: guanylate-binding protein 1-like

GO: NA

KEGG:

id description
K20899 GBP1_3_4_7; guanylate-binding protein 1/3/4/7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043221036.1 True 2620 mRNA 0.45 11 20467330 20473524
XR_006247459.1 False 2059 transcript 0.47 10 20467268 20472616

Neighbor

gene id symbol gene type direction distance location
odf3l2a zgc:110183,LOC107749223,LOC107602632,LOC107721708,LOC107588920,LOC107690329,LOC107678684 coding upstream 31846 20433469 ~ 20435422 (+)
acvr1l acvr1l,LOC107678695,LOC107749086,LOC107602619,LOC107721710,LOC107690001 coding upstream 163494 20294585 ~ 20303774 (+)
epha4b epha4b,LOC107694655,LOC107668971,LOC108428906,LOC108268054,LOC103372263 coding upstream 721373 19644610 ~ 19745895 (+)
LOC122324221 NA coding upstream 836138 19629741 ~ 19631130 (+)
LOC122357116 NA coding upstream 841930 19622041 ~ 19625338 (+)
vcpip1 vcpip1,LOC107567007,LOC107721719,LOC107659314,LOC107690121,LOC107749097,LOC107602633 coding downstream 46385 20519909 ~ 20529006 (+)
LOC122358486 LOC107602635,LOC107566996,LOC107721759 coding downstream 64013 20537537 ~ 20539554 (+)
LOC122355453 NA coding downstream 70302 20543826 ~ 20547503 (+)
LOC122355454 cyp7b1,LOC107749124,LOC107659553,LOC107602637,LOC107566988,LOC107690180,LOC107721742 coding downstream 76419 20549943 ~ 20555995 (+)
tmeff1a LOC107749138,LOC107602613,LOC107659611 coding downstream 89390 20562914 ~ 20567961 (+)
G13874 NA non-coding upstream 1422 20465527 ~ 20465846 (+)
G13857 NA non-coding upstream 3309 20463738 ~ 20463959 (+)
G13821 NA non-coding upstream 145880 20317181 ~ 20321388 (+)
G13829 znf622,LOC107678698,LOC107602620,LOC107588872 non-coding upstream 152287 20312046 ~ 20314981 (+)
G13768 NA non-coding upstream 851213 19613459 ~ 19616055 (+)
G13851 LOC107721736 non-coding downstream 4439 20477963 ~ 20499950 (+)
G13880 NA non-coding downstream 7493 20481017 ~ 20503339 (+)
G13883 NA non-coding downstream 12965 20486489 ~ 20486870 (+)
G13884 NA non-coding downstream 16587 20490111 ~ 20490913 (+)
G13896 NA non-coding downstream 58688 20532212 ~ 20532738 (+)
crlf1a crlf1a,LOC107602622,LOC107678692,LOC107588877,LOC107690059 other upstream 37920 20416203 ~ 20429348 (+)
rem2 LOC107583115,LOC107567555,LOC107668956,LOC107738122,LOC107706340 other upstream 2305126 18138644 ~ 18162142 (+)
nedd8l nedd8l,LOC107591390,LOC104949953,LOC104931181,LOC107559219 other upstream 2595852 17870258 ~ 17871416 (+)
G13137 NA other upstream 2650504 17784179 ~ 17816764 (+)
LOC122325453 LOC107668965 other upstream 2684904 17779339 ~ 17782364 (+)
G13882 LOC107749119,LOC107602627,LOC107721764,LOC107659530,LOC107721763 other downstream 8140 20481664 ~ 20485218 (+)
LOC122326305 LOC107749119,LOC107602627,LOC107566983,LOC107690079,LOC107721763,LOC107721764,LOC107678697 other downstream 19650 20493174 ~ 20508391 (+)
G13998 LOC107659744,LOC107749160,LOC107563810,LOC107563823 other downstream 690418 21163942 ~ 21164822 (+)
G14211 NA other downstream 833883 21307407 ~ 21361708 (+)
LOC122354659 LOC107749134,LOC107659944,LOC107600069,LOC107692888,LOC107557869,LOC107721709,LOC101885494 other downstream 1007610 21481134 ~ 21482642 (+)

Expression


Co-expression Network