LOC122326319 (ctdsplb,LOC107722544,LOC107688434,LOC107589830,LOC107585460,LOC107689397,LOC108435491,LOC108280637)


Basic Information

Item Value
gene id LOC122326319
gene name ctdsplb,LOC107722544,LOC107688434,LOC107589830,LOC107585460,LOC107689397,LOC108435491,LOC108280637
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 8795293 ~ 8807466 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043221119.1
tttcattttgacttATGATTAAACACCACGGCTCCGCAGTCCAAGTTCTTAAGGCGTTGATGAAGAAATCCGTCAACTTTGTACGGACCGCTGTCATTGGGTGACTGCGTGCTCCCCGGccgtgcttttatttttaatatgaggGAGGGGGTTCCCAGAAAATACCTCCTCCTGCTGTTCCTCGGCTCTATCTCGTGAATATCAAACACTCGCCGTCTCCATATTGGAAGCAGAGATCAGAAAACACAGGAAAACATGAAGAGGCAGTTTTTGACGATCGCTTAAGCGCGCGGACGTCGGCGTTCTCCGCTATAGCTCCGGGAGTTTAAACGCAAGCGTTCAGACGTCGCGCGGGTCATTTATTCAGCCCGCGTTTGGAGGTTTCATGGTCAGCGCGCTAACGCTATCTTACATTAGCAACCCAGCCTCCAACTACTTGTTAGCCGTTCGGCGCTGGCGCGACTGGTTTTTGTTATGCGCGTCCACACGGGCTGATTGATCAAATGTGTGTCCGCGACGCGTATTTTAATGCAACAAAACGCAAAGATTAGTGGTCGGGTGCAGTCCGTTCGCCCACGCTAGCCTGAGCGACAGCAGTCTGCTGCTGGCTGGAGGTCTGCCATTAACTCGACTAGCTGTTAGCACAAGCTGAGACACGGACGCGGCCAGAACTCGCTGGAAAAAAAAGGAGCTAACATCTCGTTTCCATGGACAACACGTCCATAATAACGCAGGTTACGAACCCCAAGGAGGAGGAGATACTCTCGTCAAATGCTGAGAAAGTGTCGCTGTCTAACAGCAGCCTGAAGAAGAAGAGGACTCGCAGCATCTTCAGCTCATTGTTCTGCTGTCTGAGAAGTTACGATGCCGAGCCCCCCGCCGCCcccaacaacaacagcagcccTCTGCCTCCACCTGTGGAGGAGAACGGAGCTCCACCAAAGTGTGACCAGGTTGAGGTCATCCCTATCCCCAGTCCTCCAGAGAAGTACCTCCTCCCTGAGGTTAACATAAATGACTATGGGAAGAAGTGTGTGGTGATAGACTTGGATGAGACTCTGGTGCACAGCTCGTTTAAGCCCATTAGCAACGCTGATTTCATCGTCCCAGTGGAGATTGACGGCACAGTGCATCAGGTGTATGTGTTGAAGAGACCTCATGTCGACGAGTTCCTCAAACGAATGGGGGAACTGTTCGAGTGCGTGTTATTCACTGCAAGCTTAGCCAAGtatgcTGATCCCGTCTCGGATCTGCTGGACAAATGGGGAGCTTTCCGAAGCCGTCTTTTCCGGGAATCTTGTGTGTTCCACCGTGGAAATTATGTCAAGGACCTAAGCCGTTTAGGCAGGGATCTCAACAAAGTCATCATTGTGGACAACTCGCCAGCCTCCTACATCTTCCACCCAGACAATGCTGTACCTGTAGCCTCCTGGTTTGATGACATGTCCGACACAGAGCTGCTGGATCTTATCCCTTTCTTCGAGAGACTGAGTAAAGTGGATAATGTCTACACTGTGCTGAAGCAGCAGAGGACTACTAGCTAGCACGACACTAGGCTAGCCACTGTCACTATGGGGCCAGGGAGGCTGCTGGGCTCGGAGCACCACAGTGCTTCCCCTTAACAGGACCAGCCACTAGCTCAGTCCTCATCACCTACCCAGAATTCCATTCACATGATGTTTAATAGAGAAAAAGAAGTTGAAAGACAGAACTGTGAAGGACTGCTTTAGCTATTACGTGCATAAAACAAGAAGCTGATTGTTTTAACACTCAATTGCGTAAATCTCAGGAAAGCGAGCAAGAGCCTATTTCACCCTGAAGTCAAATAATAGAATTAGATTTTgcttaaagaaaatgaaagacatGCCTTTGTGGCAATTTTTTGACCACTAAGCACATTCCCTCAAAATTTTGCCATAATGCTTACATTTCttgtaatgtgtaaaaaaataaataaaaataaaat
>XM_043221128.1
tttgacttATGATTAAACACCACGGCTCCGCAGTCCAAGTTCTTAAGGCGTTGATGAAGAAATCCGTCAACTTTGTACGGACCGCTGTCATTGGGTGACTGCGTGCTCCCCGGccgtgcttttatttttaatatgaggGAGGGGGTTCCCAGAAAATACCTCCTCCTGCTGTTCCTCGGCTCTATCTCGTGAATATCAAACACTCGCCGTCTCCATATTGGAAGCAGAGATCAGAAAACACAGGAAAACATGAAGAGGCAGTTTTTGACGATCGCTTAAGCGCGCGGACGTCGGCGTTCTCCGCTATAGCTCCGGGAGTTTAAACGCAAGCGTTCAGACGTCGCGCGGGTCATTTATTCAGCCCGCGTTTGGAGGTTTCATGGTCAGCGCGCTAACGCTATCTTACATTAGCAACCCAGCCTCCAACTACTTGTTAGCCGTTCGGCGCTGGCGCGACTGGTTTTTGTTATGCGCGTCCACACGGGCTGATTGATCAAATGTGTGTCCGCGACGCGTATTTTAATGCAACAAAACGCAAAGATTAGTGGTCGGGTGCAGTCCGTTCGCCCACGCTAGCCTGAGCGACAGCAGTCTGCTGCTGGCTGGAGGTCTGCCATTAACTCGACTAGCTGTTAGCACAAGCTGAGACACGGACGCGGCCAGAACTCGCTGGAAAAAAAAGGAGCTAACATCTCGTTTCCATGGACAACACGTCCATAATAACGCAGGTTACGAACCCCAAGGAGGAGGAGATACTCTCGTCAAATGCTGAGAAAGTGTCGCTGTCTAACAGCAGCCTGAAGAAGAAGAGGACTCGCAGCATCTTCAGCTCATTGTTCTGCTGTCTGAGAAGTTACGATGCCGAGCCCCCCGCCGCCcccaacaacaacagcagcccTCTGCCTCCACCTGTGGAGGAGAACGGAGCTCCACCAAAGCCTCCAGAGAAGTACCTCCTCCCTGAGGTTAACATAAATGACTATGGGAAGAAGTGTGTGGTGATAGACTTGGATGAGACTCTGGTGCACAGCTCGTTTAAGCCCATTAGCAACGCTGATTTCATCGTCCCAGTGGAGATTGACGGCACAGTGCATCAGGTGTATGTGTTGAAGAGACCTCATGTCGACGAGTTCCTCAAACGAATGGGGGAACTGTTCGAGTGCGTGTTATTCACTGCAAGCTTAGCCAAGtatgcTGATCCCGTCTCGGATCTGCTGGACAAATGGGGAGCTTTCCGAAGCCGTCTTTTCCGGGAATCTTGTGTGTTCCACCGTGGAAATTATGTCAAGGACCTAAGCCGTTTAGGCAGGGATCTCAACAAAGTCATCATTGTGGACAACTCGCCAGCCTCCTACATCTTCCACCCAGACAATGCTGTACCTGTAGCCTCCTGGTTTGATGACATGTCCGACACAGAGCTGCTGGATCTTATCCCTTTCTTCGAGAGACTGAGTAAAGTGGATAATGTCTACACTGTGCTGAAGCAGCAGAGGACTACTAGCTAGCACGACACTAGGCTAGCCACTGTCACTATGGGGCCAGGGAGGCTGCTGGGCTCGGAGCACCACAGTGCTTCCCCTTAACAGGACCAGCCACTAGCTCAGTCCTCATCACCTACCCAGAATTCCATTCACATGATGTTTAATAGAGAAAAAGAAGTTGAAAGACAGAACTGTGAAGGACTGCTTTAGCTATTACGTGCATAAAACAAGAAGCTGATTGTTTTAACACTCAATTGCGTAAATCTCAGGAAAGCGAGCAAGAGCCTATTTCACCCTGAAGTCAAATAATAGAATTAGATTTTgcttaaagaaaatgaaagacatGCCTTTGTGGCAATTTTTTGACCACTAAGCACATTCCCTCAAAATTTTGCCATAATGCTTACATTTCttgtaatgtgtaaaaaaataaataaaaataaaat

Function

symbol description
ctdsplb Predicted to enable RNA polymerase II CTD heptapeptide repeat phosphatase activity. Orthologous to human CTDSPL (CTD small phosphatase like).

NR:

description
PREDICTED: CTD small phosphatase-like protein isoform X1

GO:

id name namespace
GO:0016791 phosphatase activity molecular_function

KEGG:

id description
K15731 CTDSP; carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043221119.1 True 1966 mRNA 0.49 8 8795293 8807466
XM_043221128.1 False 1927 mRNA 0.49 7 8795293 8807460

Neighbor

gene id symbol gene type direction distance location
zgc:110269 zgc:110269,LOC107710602,LOC107732936,LOC107553249,LOC107569743,LOC107677938 coding downstream 164994 8626930 ~ 8630299 (-)
agfg1b agfg1b,LOC107710618,LOC107700562,LOC107732949,LOC107553264,LOC107569746 coding downstream 169021 8618514 ~ 8626272 (-)
fbxo36b fbxo36b,LOC107732939,LOC107677930,LOC107756629,LOC107710601,LOC107700517,LOC107553248 coding downstream 178304 8615122 ~ 8616989 (-)
LOC122355259 LOC107710588,LOC107700494,LOC107677894,LOC107553242,LOC107569741,LOC107569740,LOC107756607,LOC107563288 coding downstream 180466 8613547 ~ 8614827 (-)
grk7a grk7a,LOC107553262,LOC107677726,LOC107732950,LOC107710616,LOC107563306 coding downstream 187798 8602542 ~ 8607495 (-)
sh3glb1b sh3glb1b,LOC107700566,LOC107710622,LOC107578300,LOC107677816,LOC107732941,LOC107553268 coding upstream 71973 8879439 ~ 8886277 (-)
selenoj selj,LOC107569742,LOC107700519,LOC103360296,LOC104956575 coding upstream 79202 8886668 ~ 8889940 (-)
LOC122356610 LOC107553251,LOC107594670,LOC107710624,LOC107732954,LOC107700569,LOC559501,LOC108413460,LOC107677956 coding upstream 136942 8944408 ~ 9001261 (-)
amy2a amy2a,LOC107700520,LOC103353956 coding upstream 248257 9055723 ~ 9059102 (-)
arhgap29b arhgap29,LOC107745695,LOC107564532,LOC107680050 coding upstream 404993 9212459 ~ 9238949 (-)
G10389 NA non-coding downstream 40148 8754849 ~ 8755145 (-)
G10345 NA non-coding downstream 164687 8630406 ~ 8630606 (-)
G10194 NA non-coding downstream 724940 8070154 ~ 8070353 (-)
G10185 NA non-coding downstream 860668 7934401 ~ 7934625 (-)
LOC122328801 NA non-coding downstream 1003683 7788737 ~ 7791610 (-)
G10432 NA non-coding upstream 122024 8929490 ~ 8930083 (-)
G10438 NA non-coding upstream 135633 8943099 ~ 8943593 (-)
G10518 ptbp2,ptbp2b,LOC107570490,LOC107594658 non-coding upstream 520336 9327802 ~ 9331243 (-)
G10569 NA non-coding upstream 643094 9450560 ~ 9450926 (-)
G10562 NA non-coding upstream 649697 9457163 ~ 9461084 (-)
zfyve9a LOC107700554,LOC107563295,LOC107677579,LOC107553256,LOC107732202 other downstream 367389 8403327 ~ 8427904 (-)
G10213 NA other downstream 687505 8106856 ~ 8107788 (-)
G10196 NA other downstream 723459 8070776 ~ 8071834 (-)
G10178 NA other downstream 1010139 7784468 ~ 7785154 (-)
G10170 kdm4ab,LOC107564389,LOC107700543,LOC107551714,LOC107684932,LOC107743373 other downstream 1301449 7492206 ~ 7493844 (-)
abca4b abca4,abca4b,LOC107564534,LOC107680047,LOC107745690 other upstream 374590 9182056 ~ 9210041 (-)
plppr5a plppr5,plppr5a,LOC107722655,LOC107693754,LOC107677753,LOC107589876,LOC108441579,LOC107718169 other upstream 684097 9491563 ~ 9519781 (-)
si:ch211-267e7.3 si:ch211-267e7.3,LOC107722581,LOC107594654,LOC107718186,LOC107589917,LOC107677774,LOC107693699 other upstream 798857 9606323 ~ 9618473 (-)
hfm1 hfm1,LOC107722645,LOC107586144 other upstream 1272716 10080182 ~ 10095857 (-)
pkn2a pkn2,LOC107693716,LOC107585639,LOC107722607,LOC107718113,LOC107691687 other upstream 1312507 10119973 ~ 10139585 (-)

Expression


Co-expression Network