f3b (f3,LOC107730491,LOC107564531,LOC107680051)


Basic Information

Item Value
gene id f3b
gene name f3,LOC107730491,LOC107564531,LOC107680051
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 9248600 ~ 9250969 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043221234.1
AAATGCAGGCGGCTGTTGGGAGATCTGACTGATAAACGCTCCTCAGAGGAATCAGTTGGATTAAATATTTGCGCCTAATTTGGGCTGTTTGTTATCGCAAGCGATGGAAAGCAAGGCTGTAATGTTTTCTGCACTTTTTCTCGTCTGTATTACGCTAGTAAACGGATCCCCAGCATCTTTGAAAGTGAGCAAGCTTACCAAAGCAAGAAATGTCACATGGTCATCTTACAATTTCAAAACAATCCTAACGTGGGGACCTAAACCTGTCAACTACACGTATACGGTTGAATTTTCAAGAGTTGGGAAGGACAAACACAGAAACCCTCACTGCATTAGAAGCCCCGAGACCGAATGTGACCTGACTAATGAACTAGAACCGAAGGGGGTCTATTCTGCTGATGTCCTCTCTGAGTCTCTACAGGGGTCTGCCGACTACGTATCCCCATTCACCAGATCAAAGACGTTCTGTCCCTATAACGACACGATAATTGGAAGGCCCGATTTTAAGTTGAACGTGAACGAGAACAAGATCGTGCTGATCATACAAGACCCCATCACAGCTCTGCACAAAGATGGCAGATCTCTGAACATACGCGACGTCTTTAAGAAAAATCTCAAGTACACGATCACGTACAACAAAGCTGGAAGCACAGGAAAAaaaacgCTGACCGTGGATGAGAGCAAAGCAGAGTTTAATAGTCTGGAGGAGGATCAGAGTTACTGCTTCAGCGTGGCGGCGTACATCCCCTCTCGTAAAGGAGAAAAGAGGGTCGGAGAATGGAGCCTGCCCAAGTGTTCACCACAGAAGCACAAGAACCTGATCGAGGAGTATGGACTGGCTGTGATCGGAGGAGCGGCGCTCATTATACTTGCTTTTGTAATTGCTGTAACCGTACTGATCGTGGTTTGCTGTAAACGAGCACGAAGACAAACACCGACGGCCAAGGAAACAGTAGTATAGGCATGAAGGAATACAACATTTCTGCTGTTTCGGGCTCAGAACGGGATGTACAGCTGGACTGTAACCGTTTTTGCGCCGAGTGAAACCTGGTTTCTATGAAACGCAAACACTACATGATATGTTGTACATATCAgatctttttattttggttacGGATGAGTCAAACTGTATCTGTTTATTAAATggcattatttattgttttttccgaaatgtattattattattattattggtagtagaaaaaatatttttaagatttacaaaatc

Function

symbol description
f3 Enables phospholipid binding activity and protease binding activity. Contributes to serine-type endopeptidase activity. Involved in several processes, including activation of cysteine-type endopeptidase activity involved in apoptotic process; activation of plasma proteins involved in acute inflammatory response; and positive regulation of signal transduction. Acts upstream of or within positive regulation of interleukin-8 production. Located in cell surface; collagen-containing extracellular matrix; and extracellular space. Part of serine-type peptidase complex. Implicated in B-lymphoblastic leukemia/lymphoma; COVID-19; disseminated intravascular coagulation; and von Willebrand's disease. Biomarker of several diseases, including COVID-19; diabetes mellitus (multiple); hematologic cancer (multiple); lung disease (multiple); and thrombosis (multiple).

NR:

description
PREDICTED: tissue factor

GO:

id name namespace
GO:0007596 blood coagulation biological_process
GO:0001944 vasculature development biological_process
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043221234.1 True 1228 mRNA 0.43 7 9248600 9250969

Neighbor

gene id symbol gene type direction distance location
arhgap29b arhgap29,LOC107745695,LOC107564532,LOC107680050 coding downstream 9651 9212459 ~ 9238949 (-)
amy2a amy2a,LOC107700520,LOC103353956 coding downstream 189498 9055723 ~ 9059102 (-)
LOC122356610 LOC107553251,LOC107594670,LOC107710624,LOC107732954,LOC107700569,LOC559501,LOC108413460,LOC107677956 coding downstream 247339 8944408 ~ 9001261 (-)
selenoj selj,LOC107569742,LOC107700519,LOC103360296,LOC104956575 coding downstream 358660 8886668 ~ 8889940 (-)
sh3glb1b sh3glb1b,LOC107700566,LOC107710622,LOC107578300,LOC107677816,LOC107732941,LOC107553268 coding downstream 362323 8879439 ~ 8886277 (-)
cnn3b cnn3b,cnn3,LOC107680046,LOC107730489,LOC107570492 coding upstream 12225 9263194 ~ 9271097 (-)
dpydb dpyd,dpydb,LOC107677757,LOC107718148 coding upstream 95060 9346029 ~ 9446782 (-)
frrs1a LOC107693701,LOC107722512,LOC107594678 coding upstream 319622 9570591 ~ 9577749 (-)
dusp12 dusp12,LOC107722526,LOC107589915,LOC107677752,LOC107718184,LOC107693747 coding upstream 397839 9648808 ~ 9651247 (-)
tpra tpra,LOC107693743,LOC107722541,LOC107718142,LOC107589873,LOC107677758 coding upstream 431004 9681973 ~ 9702207 (-)
G10438 NA non-coding downstream 305007 8943099 ~ 8943593 (-)
G10432 NA non-coding downstream 318517 8929490 ~ 8930083 (-)
G10400 NA non-coding downstream 449614 8798582 ~ 8798986 (-)
G10389 NA non-coding downstream 493455 8754849 ~ 8755145 (-)
G10345 NA non-coding downstream 617994 8630406 ~ 8630606 (-)
G10518 ptbp2,ptbp2b,LOC107570490,LOC107594658 non-coding upstream 76833 9327802 ~ 9331243 (-)
G10569 NA non-coding upstream 199591 9450560 ~ 9450926 (-)
G10562 NA non-coding upstream 206194 9457163 ~ 9461084 (-)
G10621 NA non-coding upstream 354669 9605638 ~ 9606195 (-)
G10708 NA non-coding upstream 497418 9748387 ~ 9748740 (-)
abca4b abca4,abca4b,LOC107564534,LOC107680047,LOC107745690 other downstream 38559 9182056 ~ 9210041 (-)
zfyve9a LOC107700554,LOC107563295,LOC107677579,LOC107553256,LOC107732202 other downstream 820696 8403327 ~ 8427904 (-)
G10213 NA other downstream 1140812 8106856 ~ 8107788 (-)
G10196 NA other downstream 1176766 8070776 ~ 8071834 (-)
G10178 NA other downstream 1463446 7784468 ~ 7785154 (-)
plppr5a plppr5,plppr5a,LOC107722655,LOC107693754,LOC107677753,LOC107589876,LOC108441579,LOC107718169 other upstream 240594 9491563 ~ 9519781 (-)
si:ch211-267e7.3 si:ch211-267e7.3,LOC107722581,LOC107594654,LOC107718186,LOC107589917,LOC107677774,LOC107693699 other upstream 355354 9606323 ~ 9618473 (-)
hfm1 hfm1,LOC107722645,LOC107586144 other upstream 829213 10080182 ~ 10095857 (-)
pkn2a pkn2,LOC107693716,LOC107585639,LOC107722607,LOC107718113,LOC107691687 other upstream 869004 10119973 ~ 10139585 (-)
lmo4 LOC107722609,LOC107693715,LOC107691760,LOC107589910 other upstream 889966 10140935 ~ 10143709 (-)

Expression


Co-expression Network