atp6v1h (atp6v1h,LOC107664082,LOC107686042)


Basic Information

Item Value
gene id atp6v1h
gene name atp6v1h,LOC107664082,LOC107686042
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 14380071 ~ 14410644 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043221246.1
CAAAATCCTCGCCACTGAAAAGACTGTGTGctctttaaagggttaaaggACTGGCCCTCTCACATGACAGCATCACGTGACATTGATCCCGTGACGTCTTGTAGCAATTTGACAGCAGAGGCAGCAGGTCCTAAAATACGAGAGTTTAAGATGGATATCCGAGGGGCAGTGGACGCTGCCGTCCCTACCAACATCATCGCAGCCAAGGCTGCAGAGGTCCGAGCAAACAAGGTCAACTGGCAGTCCTACCTCCAGGGCCAGATGATCTCAGCCGAGGACTGCGagttcattaaaaagtttgagaTTGCCGGGTCTGAGGACAAACAAGCAATTCTGACAAAAGAAGGACATCAGTGTGCAAAAACCTTTCTCAACCTTATGGCTCATATATCTAAAGAGCAAACAGTTCAGTACATCCTGACCCTGATTGATGACACACTGCAGGAAAATCACCAGAGAGTGAATATCTTCTTTGATTATGCCAAGAAGACTAAGAATACAGCCTGGTCGTATTTTCTCCCAATGCTGAACCGTCAAGACCTCTTTACTGTTCACATGGCTGCACGGATCATAGCCAAGCTGGCTGCCTGGGGACGTGACCTGATGGAGGGCAGTGACCTGAACTACTACTTCAACTGGATTAAGACCCAGCTCAGCTCTCAGaaacTACACGGTACAGGTGCTGAACCTGGAACAGGGACCATCTCCCCCAGTGAAAGCTCCCAGTATGTTCAGTGCGTCGCTGGATGTCTGCAGCTCATGCTGAGAGTGAATGAATACAGATTCGCCTGGGTGGAGGCCGACGGAGTGAACTGCATCACGGCGGTGTTGAGCAATAAGTGTGGCTTCCAGCTGCAGTATCAGATGATCTTCTGCGTGTGGCTCCTGGCATTCAGCCCACAACTCTGCGAGCAGTTGAGGCGCTATAACGTGGTACCGGCGCTCTCCGACATCCTCCAAGAGTCTGTCAAAGAGAAGGTCACTCGCATAATCCTGGCTGCTTTCAGGAACCTGCTGGAGAagtctgcagagagagagacccgTCAGGAGTACGCCCTTGCCATGATCCAGTGCAAAGTGCTCAAACAGCTGGAGAACCTGGACCAGCAGAAATACGATGATGAGGACATCACTGATGACATCAAGTTCCTCCTGGAAAGACTGGGAGAGAGCGTTCAGGATCTCAGTTCTTTTGATGAGTATAGCTCTGAGCTGAAGTCTGGCCGTCTGGAGTGGAGTCCGGTGCATAAATCTGAGAAGTTCTGGAGGGAAAATGCAGTTCGCCTGAACGAGAAGAACTACGAGCTGCTGAAGATACTGACCAGGTTGTTGGAAGTGTCTGATGACCCTCAGGTTATTGCCGTTGCAGCTCACGACGTGGGGGAATACGTAAGACATTACCCTCGCGGCAAGAGGGTGATCGAACAGCTGGGTGGTAAACAACTAGTGATGAACCACATGCATCATGAAGACCAGCTTGTCCGCTATAATGCCCTTCTGGCTGTTCAGAAGCTCATGGTGCATAACTGggaGTACCTGGGGAAGCAGTTGCAGTCCACCGAGCAGTCGACTCCAGCGGTGGCTGCCCGAAGCTGAACTGCTCTTGTGTTTGTGCGTGAGCCTGTGTGTCTGATCCCGTGATCTTGGTGTGAATGTAAATCTGTGCTATATAGAGAAcgaacatgataaaaaaaaaaagccgagTTGATGTATTGAACCCTAAGTTTATGATTTACTTCCATGTTGTGCTGTTTGTCGTTGTGTAAAGTTGCGCGTCCTGataataaaatcactttaaGTGGTCAGAACAGTTCACGgagtaatattaaatgttatttatgtctTCAATGTAAAACAATGAGTATGCATTCCAATAAACAGTCTACCACAGTAAA
>XM_043221250.1
AAAATCCTCGCCACTGAAAAGACTGTGTGctctttaaagggttaaaggACTGGCCCTCTCACATGACAGCATCACGTGACATTGATCCCGTGACGTCTTGTAGCAATTTGACAGCAGAGGCAGCAGGTCCTAAAATACGAGAGTTTAAGATGGATATCCGAGGGGCAGTGGACGCTGCCGTCCCTACCAACATCATCGCAGCCAAGGCTGCAGAGGTCCGAGCAAACAAGGTCAACTGGCAGTCCTACCTCCAGGGCCAGATGATCTCAGCCGAGGACTGCGagttcattaaaaagtttgagaTTGCCGGGTCTGAGGACAAACAAGCAATTCTGACAAAAGAAGGACATCAGTGTGCAAAAACCTTTCTCAACCTTATGGCTCATATATCTAAAGAGCAAACAGTTCAGTACATCCTGACCCTGATTGATGACACACTGCAGGAAAATCACCAGAGAGTGAATATCTTCTTTGATTATGCCAAGAAGACTAAGAATACAGCCTGGTCGTATTTTCTCCCAATGCTGAACCGTCAAGACCTCTTTACTGTTCACATGGCTGCACGGATCATAGCCAAGCTGGCTGCCTGGGGACGTGACCTGATGGAGGGCAGTGACCTGAACTACTACTTCAACTGGATTAAGACCCAGCTCAGCTCTCAGAGCTCCCAGTATGTTCAGTGCGTCGCTGGATGTCTGCAGCTCATGCTGAGAGTGAATGAATACAGATTCGCCTGGGTGGAGGCCGACGGAGTGAACTGCATCACGGCGGTGTTGAGCAATAAGTGTGGCTTCCAGCTGCAGTATCAGATGATCTTCTGCGTGTGGCTCCTGGCATTCAGCCCACAACTCTGCGAGCAGTTGAGGCGCTATAACGTGGTACCGGCGCTCTCCGACATCCTCCAAGAGTCTGTCAAAGAGAAGGTCACTCGCATAATCCTGGCTGCTTTCAGGAACCTGCTGGAGAagtctgcagagagagagacccgTCAGGAGTACGCCCTTGCCATGATCCAGTGCAAAGTGCTCAAACAGCTGGAGAACCTGGACCAGCAGAAATACGATGATGAGGACATCACTGATGACATCAAGTTCCTCCTGGAAAGACTGGGAGAGAGCGTTCAGGATCTCAGTTCTTTTGATGAGTATAGCTCTGAGCTGAAGTCTGGCCGTCTGGAGTGGAGTCCGGTGCATAAATCTGAGAAGTTCTGGAGGGAAAATGCAGTTCGCCTGAACGAGAAGAACTACGAGCTGCTGAAGATACTGACCAGGTTGTTGGAAGTGTCTGATGACCCTCAGGTTATTGCCGTTGCAGCTCACGACGTGGGGGAATACGTAAGACATTACCCTCGCGGCAAGAGGGTGATCGAACAGCTGGGTGGTAAACAACTAGTGATGAACCACATGCATCATGAAGACCAGCTTGTCCGCTATAATGCCCTTCTGGCTGTTCAGAAGCTCATGGTGCATAACTGggaGTACCTGGGGAAGCAGTTGCAGTCCACCGAGCAGTCGACTCCAGCGGTGGCTGCCCGAAGCTGAACTGCTCTTGTGTTTGTGCGTGAGCCTGTGTGTCTGATCCCGTGATCTTGGTGTGAATGTAAATCTGTGCTATATAGAGAAcgaacatgataaaaaaaaaaagccgagTTGATGTATTGAACCCTAAGTTTATGATTTACTTCCATGTTGTGCTGTTTGTCGTTGTGTAAAGTTGCGCGTCCTGataataaaatcactttaaGTGGTCAGAACAGTTCACGgagtaatattaaatgttatttatgtctTCAATGTAAAACAATGAGTATGCATTCCAATAAACAGTCTACCACAGTAAA
>XM_043221254.1
TGATTCAAGTCACTGAACCGAAACAAAATCCTCGCCACTGAAAAGACTGTGTGctctttaaagggttaaaggACTGGCCCTCTCACATGACAGCATCACGTGACATTGATCCCGTGACGTCTTGTAGCAATTTGACAGCAGAGGCAGCAGTTCTTAGGTCCTAAAATACGAGAGTTTAAGATGGATATCCGAGGGGCAGTGGACGCTGCCGTCCCTACCAACATCATCGCAGCCAAGGCTGCAGAGGTCCGAGCAAACAAGGTCAACTGGCAGTCCTACCTCCAGGGCCAGATGATCTCAGCCGAGGACTGCGagttcattaaaaagtttgagaTTGCCGGGTCTGAGGACAAACAAGCAATTCTGACAAAAGAAGGACATCAGTGTGCAAAAACCTTTCTCAACCTTATGGCTCATATATCTAAAGAGCAAACAGTTCAGTACATCCTGACCCTGATTGATGACACACTGCAGGAAAATCACCAGAGAGTGAATATCTTCTTTGATTATGCCAAGAAGACTAAGAATACAGCCTGGTCGTATTTTCTCCCAATGCTGAACCGTCAAGACCTCTTTACTGTTCACATGGCTGCACGGATCATAGCCAAGCTGGCTGCCTGGGGACGTGACCTGATGGAGGGCAGTGACCTGAACTACTACTTCAACTGGATTAAGACCCAGCTCAGCTCTCAGaaacTACACGGTACAGGTGCTGAACCTGGAACAGGGACCATCTCCCCCAGTGAAAGCTCCCAGTATGTTCAGTGCGTCGCTGGATGTCTGCAGCTCATGCTGAGAGTGAATGAATACAGATTCGCCTGGGTGGAGGCCGACGGAGTGAACTGCATCACGGCGGTGTTGAGCAATAAGTGTGGCTTCCAGCTGCAGTATCAGATGATCTTCTGCGTGTGGCTCCTGGCATTCAGCCCACAACTCTGCGAGCAGTTGAGGCGCTATAACGTGGTACCGGCGCTCTCCGACATCCTCCAAGAGTCTGTCAAAGAGAAGGTCACTCGCATAATCCTGGCTGCTTTCAGGAACCTGCTGGAGAagtctgcagagagagagacccgTCAGGAGTACGCCCTTGCCATGATCCAGTGCAAAGTGCTCAAACAGCTGGAGAACCTGGACCAGCAGAAATACGATGATGAGGACATCACTGATGACATCAAGTTCCTCCTGGAAAGACTGGGAGAGAGCGTTCAGGATCTCAGTTCTTTTGATGAGTATAGCTCTGAGCTGAAGTCTGGCCGTCTGGAGTGGAGTCCGGTGCATAAATCTGAGAAGTTCTGGAGGGAAAATGCAGTTCGCCTGAACGAGAAGAACTACGAGCTGCTGAAGATACTGACCAGGTTGTTGGAAGTGTCTGATGACCCTCAGGTTATTGCCGTTGCAGCTCACGACGTGGGGGAATACGTAAGACATTACCCTCGCGGCAAGAGGGTGATCGAACAGCTGGGTGGTAAACAACTAGTGATGAACCACATGCATCATGAAGACCAGCTTGTCCGCTATAATGCCCTTCTGGCTGTTCAGAAGCTCATGGTGCATAACTGggaGTACCTGGGGAAGCAGTTGCAGTCCACCGAGCAGTCGACTCCAGCGGTGGCTGCCCGAAGCTGAACTGCTCTTGTGTTTGTGCGTGAGCCTGTGTGTCTGATCCCGTGATCTTGGTGTGAATGTAAATCTGTGCTATATAGAGAAcgaacatgataaaaaaaaaaagccgagTTGATGTATTGAACCCTAAGTTTATGATTTACTTCCATGTTGTGCTGTTTGTCGTTGTGTAAAGTTGCGCGTCCTGataataaaatcactttaaGTGGTCAGAACAGTTCACGgagtaatattaaatgttatttatgtctTCAATGTAAAACAATGAGTATGCATTCCAATAAACAGTCTACCACAGTAAA

Function

symbol description
atp6v1h Predicted to enable proton-transporting ATPase activity, rotational mechanism. Involved in eye pigmentation and positive regulation of neural retina development. Acts upstream of or within animal organ development and pigmentation. Predicted to be part of vacuolar proton-transporting V-type ATPase, V1 domain. Is expressed in several structures, including digestive system; gonad; integument; nervous system; and trigeminal placode. Used to study osteoporosis. Orthologous to human ATP6V1H (ATPase H+ transporting V1 subunit H).

NR:

description
V-type proton ATPase subunit H-like

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0060041 retina development in camera-type eye biological_process
GO:0000221 vacuolar proton-transporting V-type ATPase, V1 domain cellular_component
GO:0046961 proton-transporting ATPase activity, rotational mechanism molecular_function

KEGG:

id description
K02144 ATPeV1H; V-type H+-transporting ATPase subunit H

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043221246.1 False 1895 mRNA 0.49 14 14380094 14410644
XM_043221250.1 False 1840 mRNA 0.48 13 14380095 14410644
XM_043221254.1 True 1925 mRNA 0.48 14 14380071 14410644

Neighbor

gene id symbol gene type direction distance location
tcea1 tcea1,LOC107746907,LOC107664035,LOC107558928,LOC107732572,LOC107686041,LOC107584254 coding upstream 11981 14363921 ~ 14368090 (+)
si:dkey-94e7.2 si:dkey-94e7.2,LOC107686084,LOC107586344,LOC107732574,LOC107746919,LOC108440665,LOC108268141 coding upstream 28499 14348581 ~ 14351572 (+)
ankrd33bb ankrd33bb,LOC107550706,LOC107732577,LOC107686083,LOC107664029 coding upstream 106451 14262564 ~ 14273620 (+)
march6 march6,LOC107746911,LOC107686038,LOC107732575,LOC107664076 coding upstream 117657 14245255 ~ 14262414 (+)
atpsckmt fam173b,LOC107664046,LOC107746922,LOC107550697,LOC107686036,LOC107732578 coding upstream 135127 14242673 ~ 14244944 (+)
oprk1 oprk1,LOC107586336,LOC107746918,LOC107664042,LOC107732559,LOC107558938 coding downstream 11592 14422236 ~ 14426212 (+)
chmp5a chmp5,LOC107732555,LOC107664100,LOC107558945,LOC107586329,LOC107686086,LOC107746917,LOC108440659 coding downstream 18287 14428931 ~ 14432593 (+)
bag1 bag1,LOC107746903,LOC107556611,LOC107732557,LOC107664079 coding downstream 22484 14433128 ~ 14436377 (+)
myom1a myom1a,LOC107686045,LOC107732591,LOC107664077,LOC107746915 coding downstream 29108 14439752 ~ 14461713 (+)
lpin2 lpin2,lipin2,LOC107686047,LOC107584234,LOC107664080 coding downstream 51269 14461913 ~ 14480848 (+)
G11895 rgs20,LOC107584260,LOC107746905 non-coding upstream 4321 14371918 ~ 14375750 (+)
G11894 NA non-coding upstream 8237 14369688 ~ 14371834 (+)
G11832 rpl7,LOC107664057,LOC107584398,LOC107686030,LOC107550715 non-coding upstream 194285 14136114 ~ 14185786 (+)
G11856 jph1b,LOC107686034,LOC107746914,LOC107550709,LOC107584332,LOC107732545,LOC107664083 non-coding upstream 213116 14108155 ~ 14166955 (+)
G11855 NA non-coding upstream 215694 14131759 ~ 14164377 (+)
LOC122355240 NA non-coding downstream 84806 14495450 ~ 14497873 (+)
G11914 NA non-coding downstream 149216 14559860 ~ 14603545 (+)
G11917 NA non-coding downstream 225800 14636444 ~ 14636769 (+)
G11918 LOC107664027,LOC107713977,LOC107584165,LOC107556660 non-coding downstream 226945 14637589 ~ 14637805 (+)
G12135 fam134b,LOC107686060,LOC107664066,LOC107584095,LOC107751562,LOC107558208,LOC107713983 non-coding downstream 412517 14823161 ~ 14826945 (+)
G11854 jph1b,jph1,LOC107584332,LOC107550709,LOC107746914,LOC107732545,LOC107664083,LOC107686034,LOC107740042 other upstream 200456 14175364 ~ 14179615 (+)
rnf152 rnf152,LOC107729101,LOC107679332,LOC107567413,LOC107674343,LOC107714840,LOC107584540 other upstream 1506063 12867929 ~ 12874008 (+)
LOC122358236 NA other upstream 1753684 12623823 ~ 12626387 (+)
pld1a pld1a,LOC107688495,LOC107550602,LOC107680234,LOC107722545,LOC108442335 other upstream 2442481 11908073 ~ 11937590 (+)
mast3a LOC107722547,LOC107688474,LOC107680242,LOC107550619,LOC107709878,LOC107586070 other upstream 2872367 11482104 ~ 11507704 (+)
plxdc2a LOC107686089,LOC107713976,LOC107751571 other downstream 335463 14746107 ~ 14753161 (+)
ackr4a LOC107664061,LOC107751559,LOC107556724,LOC107751558,LOC107751560,LOC107713978,LOC107586293 other downstream 365678 14776322 ~ 14782977 (+)
LOC122357435 LOC107733881,LOC107599885,LOC107657419 other downstream 831153 15241797 ~ 15249249 (+)
dars2 dars2,LOC107720851,LOC107700987,LOC107558296,LOC107599907 other downstream 1449535 15860179 ~ 15875764 (+)
G12531 LOC107722077,LOC107568983 other downstream 1856399 16267043 ~ 16268797 (+)

Expression


Co-expression Network