tcea1 (tcea1,LOC107746907,LOC107664035,LOC107558928,LOC107732572,LOC107686041,LOC107584254)


Basic Information

Item Value
gene id tcea1
gene name tcea1,LOC107746907,LOC107664035,LOC107558928,LOC107732572,LOC107686041,LOC107584254
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 14363921 ~ 14368090 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043221266.1
ACGCCTTCCTGCCAGAGCTGTTGCGTTCGCCGCCGGTTGATTGGTGTGTTCTCGTGTGCTTGTacgttttttaacatttaaagtccGCTTGAATTTAACATTTGCCGCCAAACACCAATAATGGgtaagaaagaagaagaagagatcATTCGGATCGCAAAAAAGATGGATAAAATGGCACAGAAGAAGAACGGGgCTGGTGCACTGGACTTACTAAAGGAACTCAAGAATATACCTATGACCCTGGAGCTGCTGCAGTCTACGAGGATCGGGATGTCAGTCAATGCCATCCGCAAGCAGAGCACAGACGATGAAGTAACCTCACTGGCCAAGTCCTTGATCAAGTCCTGGAAGAAATTGCTGGATGAACCTGCTGCAGAAAAGAACtctgaagagaaaaagaaggaaCGCACGACACCAGTGGTTTCACCATCTCAAGCCAGCCCAGAGCCCAGAGAGGAGAGCTCAAGCAGTAATTCTAGCAGTAAGAGCGAGTCTGTCGATGTTACACCCAACGCATTGATAGCCACTTTTCCACGAGCACCAGGCACATCTGACTCAGTCCGTATCAAGTGCAGGGAGATGCTGTCAAGTGCTTTGCAAACAGGAGATGATTACATTGCAATTGGTGCTGACTGCGATGAACTTGGAGCGCAGATTGAAGAATGTATCTTTTTGGAGTTCAAAAATACtgatatgaaatacaaaaatcgTGTACGGAGCCGAATCTCCAATCTTAAGGATGCAAAGAACCCCAACCTGAGAAGGAATGTGCTGTGTGGGAATGTGAGTCCAGACCGCATAGCAAAAATGACAGCAGAGGAAATGGCAAGCGACGAGCTGAAAGAGATGCGAAAGAATCTGACCAAAGAAGCCATCAGGGACCACCAGGTGGCCACTTCTGGGGGCACCCAGACTGACCTGTTCACTTGTGGGAAGTGCAAAAAGAAGAAGTGTACCTACACTCAGGTTCAAACTCGAAGTGCTGATGAACCGATGACAACATTCGTCTTCTGCAATGAATGTGGAAATAGGTGGAAGTtctgctgaagttgggggtcgTTCTCTGTGTTTGGAGATGTAGCTAAATTCCAGGACCACGTTTCTGTATCATGGACAACAATTTAATGGCGCACCTGATGTACAAAGCCCACAATAGATCCCATCAACCGTTTGTTTTCTTATAATGGTCCACAAACTCATGTCCTGTGTTTTAACTTGACGTTTAGCTAGGCCATAGGCCTTTGGACTATGATCAATGTtgttgaatttcttttttcttttaccatCACTTTTTATACGTAGTTAAAAATTTTGACAACATTCATATTTAGATAGTTTTGCTTTGCTCTAAAGAAAGCTAgtcaaaactatttaattttccTAGACAAACTTgcccattttaaaataaaaaaaaccaaaaacaactgCTTTTAGCGTATGTTTGCTTTTGGTAACGgctcaagatttttttttttttttttttaaactttgttcATTTGAAAGCTACTTTGAGTATCTTTGTCACTCtgaattatacatatttatatgcatgatCTACAAATTTTTACTGTGTACATGGCTTTTACTTTCAggagtaaaatgttttaaagattgA

Function

symbol description
tcea1 Predicted to enable translation elongation factor activity and zinc ion binding activity. Predicted to be involved in positive regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated; transcription, DNA-templated; and translational elongation. Predicted to be located in nucleus. Orthologous to human TCEA1 (transcription elongation factor A1).

NR:

description
transcription elongation factor A protein 1-like isoform X2

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0006414 translational elongation biological_process
GO:0032784 regulation of DNA-templated transcription, elongation biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0003746 translation elongation factor activity molecular_function

KEGG:

id description
K03145 TFIIS; transcription elongation factor S-II

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043221266.1 True 1618 mRNA 0.42 10 14363921 14368090

Neighbor

gene id symbol gene type direction distance location
si:dkey-94e7.2 si:dkey-94e7.2,LOC107686084,LOC107586344,LOC107732574,LOC107746919,LOC108440665,LOC108268141 coding upstream 12349 14348581 ~ 14351572 (+)
ankrd33bb ankrd33bb,LOC107550706,LOC107732577,LOC107686083,LOC107664029 coding upstream 90301 14262564 ~ 14273620 (+)
march6 march6,LOC107746911,LOC107686038,LOC107732575,LOC107664076 coding upstream 101507 14245255 ~ 14262414 (+)
atpsckmt fam173b,LOC107664046,LOC107746922,LOC107550697,LOC107686036,LOC107732578 coding upstream 118977 14242673 ~ 14244944 (+)
LOC122355826 LOC107746923,LOC107732576,LOC107550699,LOC107686037,LOC107664020 coding upstream 122049 14233819 ~ 14241872 (+)
atp6v1h atp6v1h,LOC107664082,LOC107686042 coding downstream 11981 14380071 ~ 14410644 (+)
oprk1 oprk1,LOC107586336,LOC107746918,LOC107664042,LOC107732559,LOC107558938 coding downstream 54146 14422236 ~ 14426212 (+)
chmp5a chmp5,LOC107732555,LOC107664100,LOC107558945,LOC107586329,LOC107686086,LOC107746917,LOC108440659 coding downstream 60841 14428931 ~ 14432593 (+)
bag1 bag1,LOC107746903,LOC107556611,LOC107732557,LOC107664079 coding downstream 65038 14433128 ~ 14436377 (+)
myom1a myom1a,LOC107686045,LOC107732591,LOC107664077,LOC107746915 coding downstream 71662 14439752 ~ 14461713 (+)
G11832 rpl7,LOC107664057,LOC107584398,LOC107686030,LOC107550715 non-coding upstream 178135 14136114 ~ 14185786 (+)
G11856 jph1b,LOC107686034,LOC107746914,LOC107550709,LOC107584332,LOC107732545,LOC107664083 non-coding upstream 196966 14108155 ~ 14166955 (+)
G11855 NA non-coding upstream 199544 14131759 ~ 14164377 (+)
LOC122357607 NA non-coding upstream 265074 14091564 ~ 14098847 (+)
G11836 NA non-coding upstream 312301 14048717 ~ 14051620 (+)
G11894 NA non-coding downstream 1598 14369688 ~ 14371834 (+)
G11895 rgs20,LOC107584260,LOC107746905 non-coding downstream 3828 14371918 ~ 14375750 (+)
G11898 LOC106524523,LOC107383785 non-coding downstream 20895 14388985 ~ 14437409 (+)
LOC122355240 NA non-coding downstream 127360 14495450 ~ 14497873 (+)
G11914 NA non-coding downstream 191770 14559860 ~ 14603545 (+)
G11854 jph1b,jph1,LOC107584332,LOC107550709,LOC107746914,LOC107732545,LOC107664083,LOC107686034,LOC107740042 other upstream 184306 14175364 ~ 14179615 (+)
rnf152 rnf152,LOC107729101,LOC107679332,LOC107567413,LOC107674343,LOC107714840,LOC107584540 other upstream 1489913 12867929 ~ 12874008 (+)
LOC122358236 NA other upstream 1737534 12623823 ~ 12626387 (+)
pld1a pld1a,LOC107688495,LOC107550602,LOC107680234,LOC107722545,LOC108442335 other upstream 2426331 11908073 ~ 11937590 (+)
mast3a LOC107722547,LOC107688474,LOC107680242,LOC107550619,LOC107709878,LOC107586070 other upstream 2856217 11482104 ~ 11507704 (+)
plxdc2a LOC107686089,LOC107713976,LOC107751571 other downstream 378017 14746107 ~ 14753161 (+)
ackr4a LOC107664061,LOC107751559,LOC107556724,LOC107751558,LOC107751560,LOC107713978,LOC107586293 other downstream 408232 14776322 ~ 14782977 (+)
LOC122357435 LOC107733881,LOC107599885,LOC107657419 other downstream 873707 15241797 ~ 15249249 (+)
dars2 dars2,LOC107720851,LOC107700987,LOC107558296,LOC107599907 other downstream 1492089 15860179 ~ 15875764 (+)
G12531 LOC107722077,LOC107568983 other downstream 1898953 16267043 ~ 16268797 (+)

Expression


Co-expression Network