ndc1 (ndc1,LOC107674092,LOC107602511,LOC107584806,LOC107688508)


Basic Information

Item Value
gene id ndc1
gene name ndc1,LOC107674092,LOC107602511,LOC107584806,LOC107688508
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 12319670 ~ 12327438 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043221509.1
AGTCAGACACACTTGCAGGGGTCCTTATGAGGTCCTTCGAATGTGAGGCGCGGGTAATATCCACACTTTTGCCATGTTGATATGGATTTTATTGATGCTGAATTGAAACAAGAATGATAAAATGTTTTCGCTGAAGCAGAATTCATGGTTTATAAGAAAGGTTGTGATATGGAGGGCTGTGGCGAGTATTGCTTGGTCGGTGCTTCTCTTGCCAATGACAACTGCAGTTTTTGTGCTCTTGAGTAGATTCAGCCTGTTGCACCCCATCCAATGGATTTCAGATTGCACAAGCCTTCTTACAGCCTCAAGCACCATCTTTTCTCTTGTGGTGCTGTGTGGGGTGGTTCTGATCACTGGCTTTTTTAACCTGGAGTTCTACACTTTGGTTCCCTCTATACCATGTTCACGCATGGCTCTCCTGGGGACGGTGCTCCACCCGCGACAGTGTGTTCATTCTTTGGTCTACTGCACCATGGGCATGCTGGTAATGTGGTGTGCTTCTGTTACCATCGGTGGACGTTACAGCACTCTAGGAAGTCCCTGCAGGCAAAGCGAGAGTGGTGAAGCAGTGACCTGTCTGAACGAGTATCATCTCTTTCTACTTCTGGCTGGGGCCTTCATGGGATACAGTCATAGTTTCTTGGGAGTGGTTCAGAATATGTACTATGTGTCCTTTCAACCCATACAACAATACAAATATCCGCGGTTCAAGGGCTGTCTGCCAATGGTGGTGAAGTGCAGTGTTATTCAGGCCTTATATTCAGCCAGGAATTTTGCtgctctttatttcttttttgGGTATGTTCCTAAGACCTGGATCTCCAGCACACTTAATCTACAGATAGACAGTTCTCTTCAACCACTGGATTCATTGACTGGACTACTAGACTTCTCCCTCCTTTACCACCTGTCGATCAGTGGCGCTTTCCTGTACCTAACCTGGTATCTCACCGTGCTTCTCTTCAGGATTTATGTCACAGAGGCCTACAGTTTTCCAGTGCAGTCCACGTTTACTGAGGATGCAGAGCAGTGTCTTCCCAAAGTTTTGGCTGAGAAAAACACTTTAGTCATGAAGtttttggcTCTGCAAGACCTGGCTCTGTTATCACAACATTCTCTCTCACGCAGACTAGAAGTCTTCAGTCTGAGTCAGCCAGGTGGTCACCCTCATAACTGGAATGCCATCAGTAGGGAATGTCTGTCTTTGCTGAGTGAACTGACACAGAGACTGGTGGCTCATCAGGATGCGGTTGCCTCTAACGGCCGAGTCAAGTCTCAGTCTGCCAGCAGTAACACCAGATCTGCCTCTTCAAGCAGCTCAGTGGGGTCTGGAACGGAGGAGATTGCTGAGACCCCTCGACTCAGTGTCCCACTAAGGACCCCTGGTTCAGTCTTTAAGTCTTCAGTGGGAGGTGTGAATAGCGCTTTGACGGCTCCTTTCACCCCAGATGTggacagccctttctcttcacCTGCTATTCGACGTCTGGTTGGCCAACAGGATCCTCAGTCTCCCTGGTTTGGTACAGTACAAAGCCCCCATATCATGAGGAGAGGGCCCAAACTGTGGAGTGCCTCCACAGagtCCCAGTCCAACGGCAGCCCCCCTGCCTCCCCTGCCACTGTTCCTAGTCCTCCTGCAGAGAGTCAGAAACCCAGCTTCCTGGCCCAGTGGCTACAGAACAGGAGAGAGCAGGTTAAAAGCTTTTTGGCAAAGCGGGTGCtgataatgtatttatttaacaagCTTCCAGAAGCCTCTAGCCAAGCCCTGTTTGCTGACAGCCAGTCTCATATCTGGGCTCTCCAAGgaCTATCTCATCTGGTGGCAGCCTCTTTCTCTGAGGATCAGTTTGGAGTCGTGCAGACCACATTACCCAGCATTCTTAGCTGCTTGGTAGTCTTGCTCGAGGCGGTTGACAGACACTTCAAGCTGCCCCATGCCTCCAGCAAACCTGTGAGGACTATCTGCAGCATGGGAGACTCCACACACAAAACTCTAAGGTTTGCACTCAGGGCTGCTCTGAAGACCGCCATCTACAAGATAACTACCACTTTTGGAGAGCACTTGAAtgCTGTGAATATTTCAACAGAACATAGAAAAAGACTTCAGCAGTTCTTGGAATTCAAGGAATAGACATCATCTTCTCAATACAGAGAGACAGTATGCTTCTTCGAAGGGGGATTAGTGCTGTATGTCACTCAAGGCCTTACTTTAAGGCCAAGTGCTGCACTTTAtttcccatttaaaaaaaaataaaaaaagtcacattctaggtaatatttacatattcctTAAACCTAACAATCATTCACATGATCTGGGAATTTTATGTGTATGTACCTGCGTACTAGAATGTGATAAGACTTCAAAATCATGGTGGGGTCTTGAATAAAAAGTATTGTTgctctttattttcagtatatttaaatttcattgttCCCTTTTAACAAAAATGGAGCCATGAACCTTTTGAATCTTGCATCATTGTTTGTtccacatttattattttgtgctcTGATTGGGTGGTAAATTTTTAGGACCCCCATACATTTAACATGGATCTTTACTTCCATGTTCATCCATTTACCATAAACACGTTTGGGGAATTTGTTTGCCAAAAGAGAATCGATTTTGTTAATgtcaaatgttatatttttgaaacgttacatttaaataaactcttttgtaaaatgtcatgtca
>XM_043221518.1
AGTCAGACACACTTGCAGGGGTCCTTATGAGGTCCTTCGAATGTGAGGCGCGGGTAATATCCACACTTTTGCCATGTTGATATGGATTTTATTGATGCTGAATTGAAACAAGAATGATAAAATGTTTTCGCTGAAGCAGAATTCATGGTTTATAAGAAAGGTTGTGATATGGAGGGCTGTGGCGAGTATTGCTTGGTCGGTGCTTCTCTTGCCAATGACAACTGCAGTTTTTGTGCTCTTGAGTAGATTCAGCCTGTTGCACCCCATCCAATGGATTTCAGATTGCACAAGCCTTCTTACAGCCTCAAGCACCATCTTTTCTCTTGTGGTGCTGTGTGGGGTGGTTCTGATCACTGGCTTTTTTAACCTGGAGTTCTACACTTTGGTTCCCTCTATACCATGTTCACGCATGGCTCTCCTGGGGACGGTGCTCCACCCGCGACAGTGTGTTCATTCTTTGGTCTACTGCACCATGGGCATGCTGGTAATGTGGTGTGCTTCTGTTACCATCGGTGGACGTTACAGCACTCTAGGAAGTCCCTGCAGGCAAAGCGAGAGTGGTGAAGCAGTGACCTGTCTGAACGAGTATCATCTCTTTCTACTTCTGGCTGGGGCCTTCATGGGATACAGTCATAGTTTCTTGGGAGTGGTTCAGAATATGTACTATGTGTCCTTTCAACCCATACAACAATACAAATATCCGCGGTTCAAGGGCTGTCTGCCAATGGTGGTGAAGTGCAGTGTTATTCAGGCCTTATATTCAGCCAGGAATTTTGCtgctctttatttcttttttgGGTATGTTCCTAAGACCTGGATCTCCAGCACACTTAATCTACAGATAGACAGTTCTCTTCAACCACTGGATTCATTGACTGGACTACTAGACTTCTCCCTCCTTTACCACCTGTCGATCAGTGGCGCTTTCCTGTACCTAACCTGGTATCTCACCGTGCTTCTCTTCAGGATTTATGTCACAGAGGCCTACAGTTTTCCAGTGCAGTCCACGTTTACTGAGGATGCAGAGCAGTGTCTTCCCAAAGTTTTGGCTGAGAAAAACACTTTAGTCATGAAGtttttggcTCTGCAAGACCTGGCTCTGTTATCACAACATTCTCTCTCACGCAGACTAGAAGTCTTCAGTCTGAGTCAGCCAGGTGGTCACCCTCATAACTGGAATGCCATCAGTAGGGAATGTCTGTCTTTGCTGAGTGAACTGACACAGAGACTGGTGGCTCATCAGGATGCGGTTGCCTCTAACGGCCGAGTCAAGTCTCAGTCTGCCAGCAGTAACACCAGATCTGCCTCTTCAAGCAGCTCAGTGGGGTCTGGAACGGAGGAGATTGCTGAGACCCCTCGACTCAGTGTCCCACTAAGGACCCCTGGTTCAGTCTTTAAGTCTTCAGTGGGAGGTGTGAATAGCGCTTTGACGGCTCCTTTCACCCCAGATGTggacagccctttctcttcacCTGCTATTCGACGTCTGGTTGGCCAACAGGATCCTCAGTCTCCCTGGTTTGGTACAGTACAAAGCCCCCATATCATGAGGAGAGGGCCCAAACTGTGGAGTGCCTCCACAGagtCCCAGTCCAACGGCAGCCCCCCTGCCTCCCCTGCCACTGTTCCTAGTCCTCCTGCAGAGAGTCAGAAACCCAGCTTCCTGGCCCAGTGGCTACAGAACAGGAGAGAGCAGCTTCCAGAAGCCTCTAGCCAAGCCCTGTTTGCTGACAGCCAGTCTCATATCTGGGCTCTCCAAGgaCTATCTCATCTGGTGGCAGCCTCTTTCTCTGAGGATCAGTTTGGAGTCGTGCAGACCACATTACCCAGCATTCTTAGCTGCTTGGTAGTCTTGCTCGAGGCGGTTGACAGACACTTCAAGCTGCCCCATGCCTCCAGCAAACCTGTGAGGACTATCTGCAGCATGGGAGACTCCACACACAAAACTCTAAGGTTTGCACTCAGGGCTGCTCTGAAGACCGCCATCTACAAGATAACTACCACTTTTGGAGAGCACTTGAAtgCTGTGAATATTTCAACAGAACATAGAAAAAGACTTCAGCAGTTCTTGGAATTCAAGGAATAGACATCATCTTCTCAATACAGAGAGACAGTATGCTTCTTCGAAGGGGGATTAGTGCTGTATGTCACTCAAGGCCTTACTTTAAGGCCAAGTGCTGCACTTTAtttcccatttaaaaaaaaataaaaaaagtcacattctaggtaatatttacatattcctTAAACCTAACAATCATTCACATGATCTGGGAATTTTATGTGTATGTACCTGCGTACTAGAATGTGATAAGACTTCAAAATCATGGTGGGGTCTTGAATAAAAAGTATTGTTgctctttattttcagtatatttaaatttcattgttCCCTTTTAACAAAAATGGAGCCATGAACCTTTTGAATCTTGCATCATTGTTTGTtccacatttattattttgtgctcTGATTGGGTGGTAAATTTTTAGGACCCCCATACATTTAACATGGATCTTTACTTCCATGTTCATCCATTTACCATAAACACGTTTGGGGAATTTGTTTGCCAAAAGAGAATCGATTTTGTTAATgtcaaatgttatatttttgaaacgttacatttaaataaactcttttgtaaaatgtcatgtca

Function

symbol description
ndc1 Predicted to enable protein-macromolecule adaptor activity. Predicted to be involved in nuclear pore organization. Predicted to act upstream of or within mRNA transport and protein transport. Predicted to be located in nuclear membrane. Predicted to be integral component of membrane. Predicted to be part of nuclear pore transmembrane ring. Orthologous to human NDC1 (NDC1 transmembrane nucleoporin).

NR:

description
nucleoporin NDC1

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0051028 mRNA transport biological_process
GO:0005643 nuclear pore cellular_component
GO:0031965 nuclear membrane cellular_component

KEGG:

id description
K14315 NDC1, TMEM48; nucleoporin NDC1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043221509.1 True 2705 mRNA 0.45 18 12319670 12327438
XM_043221518.1 False 2654 mRNA 0.46 17 12319670 12327438

Neighbor

gene id symbol gene type direction distance location
LOC122328397 LOC107688509,LOC107729466,LOC107714866,LOC107674362,LOC107602512 coding downstream 566 12293348 ~ 12319104 (-)
si:ch211-106k21.5 si:ch211-106k21.5,LOC107688547,LOC107729472,LOC107714834,LOC107674086,LOC107602518 coding downstream 26715 12287425 ~ 12292955 (-)
best4 best4,LOC107729385,LOC107674419,LOC107714835,LOC107602543 coding downstream 33659 12282082 ~ 12286011 (-)
acadm acadm,LOC107688505,LOC107584839,LOC107674066,LOC107602542 coding downstream 49198 12267085 ~ 12270472 (-)
rabggtb rabggtb,LOC107584851,LOC107732517,LOC107576861 coding downstream 53548 12261916 ~ 12266122 (-)
zgc:113691 zgc:113691,LOC107714832,LOC107729460,LOC107586526,LOC107674428,LOC107688550,LOC107688549 coding upstream 354 12327792 ~ 12329094 (-)
yipf1 yipf1,LOC107688551,LOC107586505,LOC107729441,LOC107602540,LOC107714864,LOC107674435 coding upstream 2313 12329751 ~ 12334468 (-)
tmem59 tmem59,LOC107688510,LOC107584797,LOC107729271,LOC107674113,LOC107714860,LOC107602538 coding upstream 10236 12337674 ~ 12340777 (-)
LOC122356975 LOC107688511,LOC107674121,LOC107584783,LOC107602536,LOC107729248,LOC107714859 coding upstream 13757 12341195 ~ 12351311 (-)
si:dkey-181m9.8 LOC107584711,LOC107714829,LOC107729152,LOC107674166,LOC107602534 coding upstream 53703 12381141 ~ 12389981 (-)
G11551 LOC107657932,LOC107700454,LOC107585903,LOC105895027,LOC107549844,LOC107743876,LOC107710907,LOC107579213 non-coding downstream 38460 12279758 ~ 12281210 (-)
G11549 NA non-coding downstream 47280 12271743 ~ 12272390 (-)
G11429 NA non-coding downstream 283241 12035009 ~ 12036429 (-)
G11425 slc2a2,LOC107586013,LOC107722632,LOC107680265,LOC107550598 non-coding downstream 286590 11943133 ~ 12033080 (-)
G11565 NA non-coding upstream 11838 12339276 ~ 12359064 (-)
G11572 NA non-coding upstream 25041 12352479 ~ 12353826 (-)
G11561 NA non-coding upstream 34213 12361651 ~ 12366865 (-)
G11559 NA non-coding upstream 45134 12372572 ~ 12374335 (-)
G11568 NA non-coding upstream 47213 12374651 ~ 12439008 (-)
hltf hltf,LOC107688483,LOC107722619 other downstream 704732 11592441 ~ 11614938 (-)
G11317 pde4ca,pde4c,LOC107722623,LOC107680260 other downstream 742154 11576391 ~ 11577516 (-)
crsp7 crsp7,LOC107722610,LOC107688472,LOC107550620,LOC107709903,LOC107585090,LOC107680253 other downstream 866467 11447089 ~ 11453203 (-)
cnn2 cnn2,LOC107585101,LOC107688471,LOC107709904,LOC107550622,LOC107680261 other downstream 874557 11440990 ~ 11445113 (-)
kcnn1a LOC107722564,LOC107585128,LOC107718068,LOC107680246,LOC107589798 other downstream 913970 11379243 ~ 11405700 (-)
xkr4 xkr4,zgc:123035,LOC107728991,LOC107679338,LOC107714844,LOC107674319,LOC106569249 other upstream 462086 12789524 ~ 12838093 (-)
LOC122323969 cahz,LOC107550722,LOC107755757,LOC107664098,LOC107686019,LOC107585971,LOC107751363,LOC108432254 other upstream 987791 13315229 ~ 13470263 (-)
LOC122328470 ptbp1a,ptbp3,LOC107602545,LOC107674042,LOC107732511,LOC107584874,LOC107558691,LOC107658670,LOC107744247,LOC107729315,LOC107688524 other upstream 1226335 13553773 ~ 13564365 (-)
adcyap1b adcyap1b,adcyap1,LOC107713980,LOC107686049,LOC107751550,LOC107664073 other upstream 2251557 14578995 ~ 14610266 (-)
faim2a faim2a,LOC107718029,LOC107701017,LOC107556958,LOC107657438,LOC107709826 other upstream 2793149 15120587 ~ 15127491 (-)

Expression


Co-expression Network