pitrm1 (pitrm1,LOC107698483,LOC107679400,LOC107724807)


Basic Information

Item Value
gene id pitrm1
gene name pitrm1,LOC107698483,LOC107679400,LOC107724807
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 23703501 ~ 23715237 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043221844.1
GTGCGCATGCGCAGTTTACAGCATGGGACATGGAAGGGCAGAGCTTTAATCATAACGGAAACATGAATCTCGCAACACACATGTAacgtgttttcatttttaaattggtgCGGCAGTCACAGTAATTATTAGAGACAGTAGATTgaagcatctaaaatgtttcgCCATAGCAAGGTATTGATTACGAAACTCAAGAATCTGAGTTTCCAGGGCTCGTGGAGGTCGAGAGGCAGCTCTGCTGTAGAGAGAGCACTGCAGTACACAGCGGGACAGAAGATCCACGGGTTCACTGTAAAAGAGGTAACAGCAGTGCCAGATTTGTTCCTAACAGCCGTTAAACTCTCCCATGATGCCACAGGAGCTCAGTATCTACATGCAGCCCGAGACGATTCCAACAACCTCTTCAGTGTGCAGTTTCGTACCACGCCGATGGACAGCACCGGTGTTCCTCACATTTTGGAGCACACGGTTCTGTGCGGCTCTCAGCGCTTCCCCTGTAGAGACCCCTTCTTTAAGATGCTCAATCGCTCGCTCTCCACCTTCATGAATGCCTTCACAGCGAGCGATTACACGATGTACCCGTTCTCCACACAGAATGCCACAGACTTCCAGAACCTTCTGTCAGTTTATCTGGATGCTGTCTTCTTCCCATGTCTCAGAGAACTGGACTTCTGgCAGGAGGGCTGGAGGCTGGAGCACGAGACCCCCACAGACCCCTCGAGTCGTCTGGTGTTCAAGGGTGTGGTGTTTAATGAGATGAAGGGAGTATTtTCAGATAACGAGCGTCTGTACGCTCAGCACCTGCAGAATAAGCTCCTGCCCGATCACACATACTCTGTTGTGTCCGGAGGAGAGCCGCTAGCCATTCCTGACCTGACCTGGGAGCAGCTCAGACACTTCCACGCCACACACTACCACCCCAGCAATGCacgGTTCTTCACGTATGGGGACTTACCGCTGGAGCAGCACCTGAAACAGATAGAAGAAGAGGCTCTGTCTAAATTCGAGAGAACAGAACCAAACACTGCAGTTCCACCTCAGACACACTGGGACAAACCTagAGTGGATCATGTGACTTGCAGGCCTGACGCCCTCGCTCCTGATCCCATGAAACAAAACACGCTCTGCATGAGCTATCTGCTGGGAGACATCACAGACACGTTTGAGGCGTTCATTCTGAGCCTCCTCTCCTCTCTGATGATCTCTGGTCCGAACTCTCCCTTCTACAAAGCCCTGATCGAACCTGAAATCGGCTCTGACTTCTCCTCTTCAGTGGGGTTTGATGGCAGCACTAGACAAGCGTCTTTCACTATTGGTCTTCAGGGCATGGCCGAGGCCGACACGGAGACGGTCAAACGCATCATTGCTCAAACCATCGATGACATCATCGCAACCGGTTTTGAAGAGGAGCAGATTGAAGCTCTGCTGCATAAAATCGAGATTCAGATGAAACATCAGTCTACCAGCTTTGGTCTAGCTCTCGCTTCAtATGTTGCGACTTGCTGGAATCATGACGGTGATCCAGTGCAGCTGTTGAAGATCAGTGAGAACGTGTCCCGATTCCGGCAGTGTTTGAAGGAGAACCCTCGCTACCTCCAGGACAAAGTCCAGTACTACTTTAAGGATAACACGCATCGACTGACCCTCAGCATGAGCCCTGACGAGAGGTTCTTGGAGAAACAGGCTGAAGCTGAGGAACAGAAGCTCCAGCAGAAGATACAGAACCTCAGCGAAGCAGACCACAAAGACATCTACGAGAAAGGGTTGCAGCTGCTGGCCGCTCAAAGCACGACTCAAGACGCTTCCTGTCTACCCGCTTTAAAGGTGTCCGACATCGAGCCCGTCATTCCCTACACACCTGTACAGCTGGGAACTGCAGGCGGTGTACCTGTACAGTACTGTGAGCAGCCCACCAACGGCATGGTGTATTTCAGAGCCATGTGCAACCTCAACTCCCTCCCTGAAGACCTGAAGATCTACGTTCCTCTGTTCTGCAGCGTCATTACCAAGTTGGGCTGTGGAGAGCTGGATTATCGTCAGCAGGCTCAGCGTATTGAACTGAAGACTGGAGGCATGTCTGTATCTCCACAGATCATACCAGACACCGGTGACCTAGATCTGTATGAGCAGggtatAATCCTCTCATCTTCCTGTCTGGAGAGGAATCTACCCGACATGTTTCAATTGTGGAGTGACATTTTCAACAGCCCTCATTTTGATGACGAGCAGCGTCTGCGTGTGCTGGTCATGATGTCAGCGCAGGAGCTGTCCAATGGCATCTCTTATTCCGGTCACATGTACGCGATGACGCGTGCGGCCCGGACCCTCACGCCCACAGCAGACCTGCAGGAGACCTTCAGCGGGATGGACCAGGTGAAGTTTCTGAAACGAATAGCCGAGATGACTGATCTGACTTCAGTTTTGAGGAAGCTTCCCCGGTTAAAGAGACATCTGTTGAATCCTGAGAGCATGAGGTGTGCAGTAAATGCGACACCACAGAAAATGTCGGAAGTAGCTGGAGAGATGGAGAGGTTTGTAGGTAATATAGCAGCCAACAGGAAGGAGCGCAAACCTGTCAGACCACTCGTTGTGGAGAGAGCATTCGATTCTCAGTCTGGATCATCTGCGAGTCGTAAACTCATCTCAGAGCCTCATTTCAAACCCTGTCAGATGAAGACATATTTCCAGCTTCCATTTAATGTGAACTTTGTCAGCGAGTGTGTGCGAGCCGTCCCGTTCACACACACCGACTATGCCAGTTTGTGCATTTTAGCAAGGATGATGACCGCCAAGTTCCTGCATGGAGAGATCAGAGAAAAGGGTGGAGCTTATGGAGGCGGAGCTAGAATGGGAGGAGGCGGCCTGTTCTCATTTTATTCCTATAGAGATCCAAACTCCACCCAGACGTTGTCAGCTTTCCGCGGTGGAGTAGAGTGGGCACGAGCGGGAAAGTTTACCCAGCAGGACATCGATGAGGCCAAGCTCTCGGTTTTCTCAGCTGTTGATGCGCCTATCGCTCCTTCAGATAAAGGTTTGGGACGGTTTTTAAACGGCATTACAGATGAGATTAAACaaagatacagagagagactgTTCGCGGTGACCGATAAAAACATAATTGACGTCGCCGGCAGgTATCTCGGAGTCGGTCAGCAGACATGTGGGGTGGCTATTCTAGGCCCGGAAAATGAAAGCATCAGAAAAGACCCATCCTGGGTGGTCAAATAGActgttttctcttcttattGTTAGGACTGTGTAAGACACGCACATGCTTCTGGATCACGCAcagaagatttttttcttcatgtcatCTTCATGaggtgcttaaaaaaaaaaaaaaatttaaagtatCACTTATTAGTTCACTAAAACTATTTTGGTTATACGGCACATTGTTGATGGTGGACTTCCATCTTTTTATAACAACGTCAAAAATTATGCTGCAGTGTTGTAATTTGAGTGAGATTTATAAATTGGACATTATTTATGAGATGTAtagaattataataaacatgacCATGTTTAA

Function

symbol description
pitrm1 Predicted to enable metalloendopeptidase activity. Predicted to be involved in protein processing. Predicted to be located in mitochondrion. Predicted to be active in mitochondrial matrix. Orthologous to human PITRM1 (pitrilysin metallopeptidase 1).

NR:

description
PREDICTED: presequence protease, mitochondrial

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0005759 mitochondrial matrix cellular_component
GO:0046872 metal ion binding molecular_function
GO:0004222 metalloendopeptidase activity molecular_function

KEGG:

id description
K06972 PITRM1, PreP, CYM1; presequence protease

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043221844.1 True 3529 mRNA 0.49 27 23703501 23715237

Neighbor

gene id symbol gene type direction distance location
klf6b klf6,LOC107698482,LOC107679408,LOC107572997,LOC107724813,LOC107569266,LOC107728392 coding upstream 1237 23698257 ~ 23702264 (+)
LOC122354999 NA coding upstream 66071 23634222 ~ 23637430 (+)
LOC122354760 NA coding upstream 73128 23625007 ~ 23630373 (+)
mbnl1 mbnl1,LOC107724811,LOC107573627,LOC107745615,LOC107679403,LOC107567699 coding upstream 78635 23563764 ~ 23624866 (+)
scg2b LOC107552496,LOC107552495,LOC107660152,LOC107738796 coding upstream 170144 23530770 ~ 23533357 (+)
trnaw-cca_1 NA coding downstream 21814 23737051 ~ 23737122 (+)
LOC122356725 LOC107698487,LOC107737400,LOC107679394,LOC107572992,LOC107728385,LOC107569271,LOC793909 coding downstream 50721 23765958 ~ 23770492 (+)
lpar5a LOC107737401,LOC107698486,LOC107572991,LOC107679392,LOC107728381,LOC107569267 coding downstream 57643 23772880 ~ 23775183 (+)
hes6 hes6,LOC107737402,LOC107572989,LOC107728379,LOC107569265,LOC107679391 coding downstream 68487 23783724 ~ 23786255 (+)
LOC122323665 NA coding downstream 204994 23920231 ~ 23925631 (+)
G14841 NA non-coding upstream 11641 23690422 ~ 23691860 (+)
G14850 LOC107724821,LOC107698475,LOC107573003,LOC107709797,LOC107680183,LOC107577770 non-coding upstream 20103 23668563 ~ 23683398 (+)
LOC122355031 NA non-coding upstream 59951 23642463 ~ 23643550 (+)
G14837 cul3a,LOC107679386,LOC102194569,LOC105907048,LOC107567698,LOC107724810 non-coding upstream 141149 23558249 ~ 23562352 (+)
G14832 LOC101170875,LOC106580681,LOC106612448 non-coding upstream 150268 23550605 ~ 23553233 (+)
G14859 NA non-coding downstream 4405 23719642 ~ 23762825 (+)
G14860 NA non-coding downstream 7029 23722266 ~ 23722747 (+)
G14872 NA non-coding downstream 29634 23744871 ~ 23746553 (+)
G14889 NA non-coding downstream 61866 23777103 ~ 23780120 (+)
G14863 LOC107728390,LOC107572994,LOC107737392,LOC107569272 non-coding downstream 76025 23791262 ~ 23795903 (+)
G14831 LOC107679389,LOC107745621,LOC107567694,LOC108428304 other upstream 155527 23545106 ~ 23547974 (+)
LOC122324535 NA other upstream 698247 23003165 ~ 23005254 (+)
fcer1gl LOC107671799 other upstream 1008171 22691199 ~ 22695330 (+)
LOC122327931 NA other upstream 1029226 22633529 ~ 22674275 (+)
LOC122327302 LOC107705949,LOC107599389,LOC107675701,LOC107737183,LOC107661566,LOC107586444,LOC107679834,LOC107719545,LOC107717972 other upstream 1217846 22461916 ~ 22485655 (+)
LOC122323670 NA other downstream 220684 23935921 ~ 23939016 (+)
LOC122327416 LOC107728372,LOC107569261,LOC107681443 other downstream 330448 24045685 ~ 24048465 (+)
LOC122327425 LOC107728372,LOC107569261,LOC107681443 other downstream 344175 24059412 ~ 24062202 (+)
LOC122327442 LOC107549368,LOC107569260,LOC107737397,LOC107681447,LOC107681444 other downstream 368601 24083838 ~ 24096897 (+)
abhd17aa abhd17aa,LOC107599293,LOC107757810,LOC107698472,LOC107600230,LOC108433103,LOC105904035,LOC108280794 other downstream 526635 24241872 ~ 24249991 (+)

Expression


Co-expression Network